Strain Fitness in Sphingobium sp. HT1-2 around GFF4968

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,965,793	-		GFF4967	0.60	+1.0
4,965,793	-		GFF4967	0.60	-1.6
4,965,793	-		GFF4967	0.60	-0.3
4,965,816	-		GFF4967	0.61	-2.4
4,965,833	+		GFF4967	0.62	-1.6
4,965,838	+		GFF4967	0.62	-0.8
4,965,838	+		GFF4967	0.62	+0.1
4,965,838	+		GFF4967	0.62	-2.8
4,965,838	+		GFF4967	0.62	-1.4
4,965,838	+		GFF4967	0.62	+1.6
4,965,838	+		GFF4967	0.62	-0.7
4,965,838	+		GFF4967	0.62	-1.8
4,965,838	+		GFF4967	0.62	-2.7
4,965,838	+		GFF4967	0.62	-2.4
4,965,838	+		GFF4967	0.62	-0.3
4,965,838	+		GFF4967	0.62	+0.6
4,965,838	+		GFF4967	0.62	-1.6
4,965,841	-		GFF4967	0.63	+1.4
4,965,846	-		GFF4967	0.63	-1.2
4,965,846	-		GFF4967	0.63	-0.6
4,965,846	-		GFF4967	0.63	+0.1
4,965,846	-		GFF4967	0.63	+0.3
4,965,846	-		GFF4967	0.63	+0.0
4,965,846	-		GFF4967	0.63	-0.3
4,965,846	-		GFF4967	0.63	-0.2
4,965,848	+		GFF4967	0.63	-1.3
4,965,848	+		GFF4967	0.63	-0.8
4,965,848	+		GFF4967	0.63	+0.9
4,965,848	+		GFF4967	0.63	-1.6
4,965,856	-		GFF4967	0.63	-0.7
4,965,856	-		GFF4967	0.63	-0.3
4,965,856	-		GFF4967	0.63	-1.5
4,965,856	-		GFF4967	0.63	-1.8
4,965,856	-		GFF4967	0.63	-2.0
4,965,856	-		GFF4967	0.63	+1.2
4,965,856	-		GFF4967	0.63	-0.1
4,965,889	+		GFF4967	0.65	-1.2
4,965,897	-		GFF4967	0.65	-1.2
4,965,910	+		GFF4967	0.66	-0.2
4,965,918	-		GFF4967	0.66	-0.8
4,965,918	-		GFF4967	0.66	+0.2
4,965,918	-		GFF4967	0.66	+0.1
4,965,918	-		GFF4967	0.66	-0.9
4,965,918	-		GFF4967	0.66	-1.5
4,965,928	+		GFF4967	0.67	-1.2
4,965,937	-		GFF4967	0.67	-1.3
4,965,937	-		GFF4967	0.67	-0.3
4,965,961	-		GFF4967	0.68	-2.8
4,966,007	+		GFF4967	0.70	-0.7
4,966,007	+		GFF4967	0.70	-0.6
4,966,007	+		GFF4967	0.70	-1.8
4,966,026	+		GFF4967	0.71	+1.2
4,966,026	+		GFF4967	0.71	-0.4
4,966,033	+		GFF4967	0.71	-0.4
4,966,034	-		GFF4967	0.71	+0.5
4,966,048	+		GFF4967	0.72	-1.0
4,966,052	-		GFF4967	0.72	+0.0
4,966,056	-		GFF4967	0.72	-0.3
4,966,056	-		GFF4967	0.72	-1.8
4,966,076	+		GFF4967	0.73	-0.7
4,966,084	-		GFF4967	0.74	+1.1
4,966,086	-		GFF4967	0.74	+0.4
4,966,090	-		GFF4967	0.74	-3.1
4,966,102	-		GFF4967	0.74	-0.4
4,966,177	-		GFF4967	0.78	-2.2
4,966,186	+		GFF4967	0.78	-2.4
4,966,191	+		GFF4967	0.78	-1.0
4,966,229	-		GFF4967	0.80	+0.4
4,966,246	-		GFF4967	0.81	+0.6
4,966,276	+		GFF4967	0.82	-2.0
4,966,283	-		GFF4967	0.83	-1.3
4,966,291	-		GFF4967	0.83	-0.8
4,966,293	-		GFF4967	0.83	-1.8
4,966,293	-		GFF4967	0.83	+1.5
4,966,294	-		GFF4967	0.83	-1.3
4,966,333	-		GFF4967	0.85	+0.7
4,966,343	-		GFF4967	0.85	-1.5
4,966,354	+		GFF4967	0.86	-1.7
4,966,380	+		GFF4967	0.87	-1.6
4,966,380	+		GFF4967	0.87	-1.3
4,966,388	-		GFF4967	0.87	+0.5
4,966,388	-		GFF4967	0.87	-0.6
4,966,388	-		GFF4967	0.87	+0.3
4,966,393	-		GFF4967	0.87	-1.5
4,966,393	-		GFF4967	0.87	+0.2
4,966,396	+		GFF4967	0.88	-0.8
4,966,410	-		GFF4967	0.88	-1.7
4,966,419	-		GFF4967	0.89	-0.1
4,966,428	-		GFF4967	0.89	-0.5
4,966,444	-		GFF4967	0.90	+0.4
4,966,460	+				-1.0
4,966,460	+				-2.0
4,966,462	-				-0.0
4,966,468	-				+0.7
4,966,502	-				-1.0
4,966,508	-				+0.2
4,966,509	-				-0.6
4,966,509	-				-1.6
4,966,509	-				-0.0
4,966,541	+				-0.0
4,966,541	+				-1.1
4,966,549	-				-0.2
4,966,556	+				-0.0
4,966,556	+				-1.6
4,966,556	+				-0.5
4,966,556	+				-1.5
4,966,563	-				+0.4
4,966,604	+				-1.3
4,966,611	+				+0.1
4,966,643	-				+0.5
4,966,643	-				-0.2
4,966,643	-				+0.6
4,966,643	-				-1.7
4,966,645	+				+0.7
4,966,658	+				-0.1
4,966,658	+				-0.1
4,966,668	-				-0.2
4,966,669	+				-0.4
4,966,670	+				+0.7
4,966,670	+				+0.4
4,966,670	+				+0.1
4,966,678	-				-1.6
4,966,678	-				+0.3
4,966,679	+				-2.1
4,966,704	+				+0.4
4,966,707	+				+0.2
4,966,727	-				-0.4
4,966,727	-				+0.4
4,966,774	+				-1.5
4,966,784	+				-0.2
4,966,784	+				+0.1
4,966,784	+				+0.5
4,966,784	+				-1.3
4,966,784	+				+0.6
4,966,784	+				+0.2
4,966,784	+				-0.6
4,966,786	+				-1.5
4,966,791	+				-1.1
4,966,791	+				-0.5
4,966,791	+				-0.4
4,966,791	+				-1.8
4,966,791	+				-0.7
4,966,791	+				-1.0
4,966,791	+				-0.0
4,966,791	+				-0.6
4,966,791	+				+0.2
4,966,792	-				-1.7
4,966,792	-				+0.3
4,966,792	-				-0.5
4,966,792	-				+0.8
4,966,794	-				-0.0
4,966,796	+				+0.7
4,966,796	+				-1.5
4,966,796	+				-1.8
4,966,798	-				-0.1
4,966,799	-				+0.2
4,966,799	-				-0.8
4,966,799	-				+1.8
4,966,799	-				-1.6
4,966,799	-				+0.3
4,966,799	-				-0.7
4,966,799	-				+0.3
4,966,804	-				+0.4
4,966,804	-				+0.7
4,966,804	-				-0.3
4,966,804	-				-1.5
4,966,809	-				+0.4
4,966,810	+				-2.6
4,966,813	-				+0.1
4,966,845	+				+0.1
4,966,845	+				-1.8
4,966,845	+				-2.0
4,966,850	+				-1.6
4,966,850	+				-1.8
4,966,850	+				-1.9
4,966,850	+				-1.3
4,966,850	+				+0.6
4,966,850	+				-0.7
4,966,850	+				+0.8
4,966,850	+				-0.9
4,966,850	+				+0.8
4,966,850	+				-0.3
4,966,850	+				-1.5
4,966,850	+				-1.7
4,966,850	+				+0.3
4,966,850	+				-0.9
4,966,850	+				-1.1
4,966,850	+				-1.2
4,966,858	-				-1.7
4,966,858	-				-0.9
4,966,858	-				+0.5
4,966,858	-				-0.5
4,966,858	-				-0.2
4,966,858	-				-0.7
4,966,858	-				-0.6
4,966,858	-				-0.7
4,966,863	-				-0.6
4,966,873	+				+0.1
4,966,873	+				+0.5
4,966,879	+				+0.4
4,966,881	-				-0.3
4,966,915	-		GFF4968	0.13	+0.2
4,966,938	+		GFF4968	0.15	-0.9
4,966,948	-		GFF4968	0.16	+0.3
4,966,958	-		GFF4968	0.17	-0.9
4,966,969	+		GFF4968	0.18	-0.9
4,966,979	+		GFF4968	0.19	-1.7
4,966,979	+		GFF4968	0.19	+0.9
4,966,979	+		GFF4968	0.19	-0.5
4,966,979	+		GFF4968	0.19	-1.9
4,966,979	+		GFF4968	0.19	-0.9
4,966,987	-		GFF4968	0.20	-1.0
4,966,987	-		GFF4968	0.20	-0.3
4,966,987	-		GFF4968	0.20	-0.3
4,966,987	-		GFF4968	0.20	+0.8
4,966,987	-		GFF4968	0.20	-0.0
4,967,001	+		GFF4968	0.22	-2.8
4,967,036	-		GFF4968	0.25	-0.2
4,967,036	-		GFF4968	0.25	+1.3
4,967,094	-		GFF4968	0.31	-0.4
4,967,094	-		GFF4968	0.31	-0.5
4,967,094	-		GFF4968	0.31	+0.3
4,967,100	+		GFF4968	0.32	+0.1
4,967,125	+		GFF4968	0.35	+0.9
4,967,125	+		GFF4968	0.35	-2.2
4,967,128	-		GFF4968	0.35	-0.9
4,967,130	+		GFF4968	0.35	-0.2
4,967,133	-		GFF4968	0.36	-0.7
4,967,133	-		GFF4968	0.36	-0.3
4,967,135	+		GFF4968	0.36	-1.3
4,967,135	+		GFF4968	0.36	-1.3
4,967,135	+		GFF4968	0.36	-0.5
4,967,135	+		GFF4968	0.36	-1.7
4,967,135	+		GFF4968	0.36	-1.5
4,967,135	+		GFF4968	0.36	-2.1
4,967,135	+		GFF4968	0.36	-0.7
4,967,135	+		GFF4968	0.36	-2.2
4,967,135	+		GFF4968	0.36	+1.4
4,967,135	+		GFF4968	0.36	-0.1
4,967,135	+		GFF4968	0.36	-0.6
4,967,135	+		GFF4968	0.36	-0.2
4,967,135	+		GFF4968	0.36	+0.1
4,967,135	+		GFF4968	0.36	+0.1
4,967,135	+		GFF4968	0.36	+0.1
4,967,138	-		GFF4968	0.36	-0.2
4,967,138	-		GFF4968	0.36	-2.9
4,967,138	-		GFF4968	0.36	-0.0
4,967,140	+		GFF4968	0.36	-0.4
4,967,140	+		GFF4968	0.36	-0.5
4,967,143	-		GFF4968	0.37	+0.1
4,967,143	-		GFF4968	0.37	+0.9
4,967,143	-		GFF4968	0.37	+0.4
4,967,143	-		GFF4968	0.37	-0.3
4,967,143	-		GFF4968	0.37	-0.0
4,967,143	-		GFF4968	0.37	+0.7
4,967,143	-		GFF4968	0.37	+0.0
4,967,143	-		GFF4968	0.37	-0.7
4,967,143	-		GFF4968	0.37	-1.7
4,967,143	-		GFF4968	0.37	-0.7
4,967,143	-		GFF4968	0.37	+0.5
4,967,143	-		GFF4968	0.37	-0.1
4,967,143	-		GFF4968	0.37	-2.5
4,967,143	-		GFF4968	0.37	-0.8
4,967,143	-		GFF4968	0.37	-2.1
4,967,148	-		GFF4968	0.37	+0.1
4,967,149	+		GFF4968	0.37	+0.3
4,967,156	-		GFF4968	0.38	-0.6
4,967,158	-		GFF4968	0.38	-1.9
4,967,170	+		GFF4968	0.39	-0.1
4,967,198	-		GFF4968	0.42	-0.2
4,967,203	+		GFF4968	0.43	-0.8
4,967,203	-		GFF4968	0.43	-1.2
4,967,268	-		GFF4968	0.50	-0.3
4,967,268	-		GFF4968	0.50	-0.2
4,967,268	-		GFF4968	0.50	+0.6
4,967,270	+		GFF4968	0.50	-2.2
4,967,275	-		GFF4968	0.50	-0.8
4,967,275	-		GFF4968	0.50	-0.6
4,967,297	+		GFF4968	0.53	-0.4
4,967,317	+		GFF4968	0.55	+0.0
4,967,355	-		GFF4968	0.59	-0.7
4,967,392	+		GFF4968	0.63	-2.7
4,967,395	-		GFF4968	0.63	-1.7
4,967,400	-		GFF4968	0.63	-1.3
4,967,435	+		GFF4968	0.67	-0.0
4,967,435	+		GFF4968	0.67	-0.5
4,967,435	+		GFF4968	0.67	-2.4
4,967,435	+		GFF4968	0.67	-0.4
4,967,435	+		GFF4968	0.67	-2.2
4,967,435	+		GFF4968	0.67	-0.4
4,967,441	-		GFF4968	0.68	-1.4
4,967,443	-		GFF4968	0.68	-2.1
4,967,443	-		GFF4968	0.68	-2.4
4,967,443	-		GFF4968	0.68	-1.7
4,967,443	-		GFF4968	0.68	-0.8
4,967,443	-		GFF4968	0.68	+0.1
4,967,443	-		GFF4968	0.68	+0.9
4,967,454	+		GFF4968	0.69	-0.4
4,967,462	-		GFF4968	0.70	-2.1
4,967,479	-		GFF4968	0.72	-0.0
4,967,486	+		GFF4968	0.72	-0.2
4,967,486	+		GFF4968	0.72	+1.0
4,967,486	+		GFF4968	0.72	+0.7
4,967,486	+		GFF4968	0.72	-1.9
4,967,486	+		GFF4968	0.72	-1.1
4,967,491	+		GFF4968	0.73	+0.6
4,967,491	+		GFF4968	0.73	-2.1
4,967,494	-		GFF4968	0.73	-0.3
4,967,497	-		GFF4968	0.74	+0.9
4,967,502	+		GFF4968	0.74	+1.1
4,967,508	+		GFF4968	0.75	-2.3
4,967,516	-		GFF4968	0.76	+0.0
4,967,516	-		GFF4968	0.76	+0.1
4,967,523	+		GFF4968	0.76	-0.7
4,967,523	+		GFF4968	0.76	+0.1
4,967,523	+		GFF4968	0.76	-1.0
4,967,528	+		GFF4968	0.77	+0.6
4,967,528	+		GFF4968	0.77	+0.8
4,967,528	+		GFF4968	0.77	-0.3
4,967,528	+		GFF4968	0.77	-0.3
4,967,528	+		GFF4968	0.77	+0.2
4,967,528	+		GFF4968	0.77	+1.5
4,967,528	+		GFF4968	0.77	-0.9
4,967,528	+		GFF4968	0.77	-0.0
4,967,528	+		GFF4968	0.77	-2.5
4,967,531	-		GFF4968	0.77	-0.2
4,967,531	-		GFF4968	0.77	-1.1
4,967,531	-		GFF4968	0.77	+0.2
4,967,531	-		GFF4968	0.77	-1.1
4,967,531	-		GFF4968	0.77	-0.9
4,967,531	-		GFF4968	0.77	+0.1
4,967,531	-		GFF4968	0.77	-0.6
4,967,531	-		GFF4968	0.77	-0.2
4,967,533	+		GFF4968	0.77	-0.5
4,967,536	-		GFF4968	0.78	+0.1
4,967,536	-		GFF4968	0.78	+1.5
4,967,536	-		GFF4968	0.78	-0.2
4,967,541	-		GFF4968	0.78	-0.3
4,967,541	-		GFF4968	0.78	-0.9
4,967,568	+		GFF4968	0.81	-0.6
4,967,568	+		GFF4968	0.81	+0.0
4,967,568	+		GFF4968	0.81	+0.4
4,967,568	+		GFF4968	0.81	-0.1
4,967,568	+		GFF4968	0.81	+0.9
4,967,572	+		GFF4968	0.81	-2.5
4,967,576	-		GFF4968	0.82	-0.5
4,967,586	+		GFF4968	0.83	+0.2
4,967,588	-		GFF4968	0.83	-0.3
4,967,588	-		GFF4968	0.83	-2.0
4,967,588	-		GFF4968	0.83	-1.5
4,967,597	+		GFF4968	0.84	-0.2
4,967,599	+		GFF4968	0.84	+0.7
4,967,599	-		GFF4968	0.84	-1.5
4,967,620	-		GFF4968	0.86	+0.8
4,967,627	-		GFF4968	0.87	+0.8
4,967,643	+		GFF4968	0.89	-0.8
4,967,648	+		GFF4968	0.89	+0.5
4,967,648	+		GFF4968	0.89	-0.7
4,967,657	+				-2.6
4,967,662	+				-0.2
4,967,665	-				+1.1
4,967,672	+				+1.2
4,967,676	-				-0.1
4,967,701	+				-1.1
4,967,701	+				-0.5
4,967,701	+				-0.5
4,967,708	+				-1.9
4,967,750	+				-0.9
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