Strain Fitness in Sphingobium sp. HT1-2 around GFF4963

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,958,938	-		GFF4962	0.16	-1.1
4,958,964	+		GFF4962	0.18	-0.2
4,958,964	+		GFF4962	0.18	+0.3
4,958,964	+		GFF4962	0.18	-1.6
4,958,964	+		GFF4962	0.18	+0.3
4,958,971	+		GFF4962	0.19	+0.1
4,958,971	+		GFF4962	0.19	-1.0
4,958,972	-		GFF4962	0.19	+1.0
4,958,972	-		GFF4962	0.19	-0.6
4,958,974	+		GFF4962	0.19	-2.6
4,958,979	-		GFF4962	0.19	-2.7
4,958,984	-		GFF4962	0.20	-0.3
4,958,993	-		GFF4962	0.21	-0.5
4,959,026	+		GFF4962	0.23	+0.4
4,959,028	+		GFF4962	0.24	-0.9
4,959,038	+		GFF4962	0.25	-1.1
4,959,039	-		GFF4962	0.25	-1.5
4,959,046	-		GFF4962	0.25	-0.6
4,959,048	+		GFF4962	0.25	+0.0
4,959,048	+		GFF4962	0.25	-0.0
4,959,094	+		GFF4962	0.29	-0.5
4,959,122	+		GFF4962	0.32	-0.6
4,959,129	-		GFF4962	0.32	+0.1
4,959,136	+		GFF4962	0.33	+1.2
4,959,136	+		GFF4962	0.33	-1.9
4,959,136	+		GFF4962	0.33	-1.5
4,959,144	-		GFF4962	0.34	+0.1
4,959,154	-		GFF4962	0.35	+0.8
4,959,154	-		GFF4962	0.35	-1.0
4,959,177	+		GFF4962	0.37	-1.2
4,959,205	+		GFF4962	0.39	-0.8
4,959,205	+		GFF4962	0.39	-1.8
4,959,211	-		GFF4962	0.40	-2.6
4,959,213	-		GFF4962	0.40	-0.0
4,959,226	+		GFF4962	0.41	-0.5
4,959,259	+		GFF4962	0.44	-0.0
4,959,266	-		GFF4962	0.44	+0.2
4,959,282	+		GFF4962	0.46	-1.2
4,959,300	+		GFF4962	0.47	+0.6
4,959,341	+		GFF4962	0.51	-3.7
4,959,348	-		GFF4962	0.52	-0.3
4,959,363	+		GFF4962	0.53	-2.0
4,959,363	+		GFF4962	0.53	-2.1
4,959,371	-		GFF4962	0.54	+1.3
4,959,371	-		GFF4962	0.54	-0.7
4,959,373	+		GFF4962	0.54	-0.9
4,959,373	+		GFF4962	0.54	+0.2
4,959,373	+		GFF4962	0.54	-0.4
4,959,381	-		GFF4962	0.54	-0.0
4,959,381	-		GFF4962	0.54	-1.8
4,959,381	-		GFF4962	0.54	+0.7
4,959,381	-		GFF4962	0.54	-2.3
4,959,386	+		GFF4962	0.55	-0.2
4,959,386	+		GFF4962	0.55	+1.1
4,959,386	+		GFF4962	0.55	-1.5
4,959,386	+		GFF4962	0.55	-1.0
4,959,394	-		GFF4962	0.56	+0.5
4,959,394	-		GFF4962	0.56	+0.1
4,959,394	-		GFF4962	0.56	-1.2
4,959,394	-		GFF4962	0.56	+0.3
4,959,394	-		GFF4962	0.56	+0.0
4,959,399	+		GFF4962	0.56	-0.8
4,959,402	-		GFF4962	0.56	-3.3
4,959,407	-		GFF4962	0.57	-1.0
4,959,407	-		GFF4962	0.57	+0.1
4,959,407	-		GFF4962	0.57	-2.0
4,959,409	+		GFF4962	0.57	+0.2
4,959,424	+		GFF4962	0.58	+1.3
4,959,424	+		GFF4962	0.58	-0.4
4,959,424	+		GFF4962	0.58	-2.2
4,959,424	+		GFF4962	0.58	-0.1
4,959,424	+		GFF4962	0.58	-0.4
4,959,424	+		GFF4962	0.58	-0.8
4,959,424	+		GFF4962	0.58	-1.5
4,959,424	+		GFF4962	0.58	+1.3
4,959,431	+		GFF4962	0.59	-0.7
4,959,432	-		GFF4962	0.59	-0.8
4,959,432	-		GFF4962	0.59	-1.4
4,959,432	-		GFF4962	0.59	-0.0
4,959,432	-		GFF4962	0.59	-0.5
4,959,437	-		GFF4962	0.59	+0.3
4,959,439	-		GFF4962	0.59	+0.1
4,959,442	+		GFF4962	0.60	-1.5
4,959,460	-		GFF4962	0.61	-0.2
4,959,474	-		GFF4962	0.62	+1.2
4,959,478	-		GFF4962	0.63	-0.9
4,959,487	+		GFF4962	0.64	+1.1
4,959,501	+		GFF4962	0.65	-1.6
4,959,510	+		GFF4962	0.66	-0.9
4,959,510	+		GFF4962	0.66	+1.1
4,959,510	+		GFF4962	0.66	-0.5
4,959,510	+		GFF4962	0.66	-1.4
4,959,510	+		GFF4962	0.66	+0.1
4,959,518	-		GFF4962	0.66	-1.1
4,959,518	-		GFF4962	0.66	+0.1
4,959,520	+		GFF4962	0.66	+0.0
4,959,528	-		GFF4962	0.67	+0.6
4,959,538	+		GFF4962	0.68	-2.0
4,959,539	+		GFF4962	0.68	-2.2
4,959,573	-		GFF4962	0.71	-2.9
4,959,595	+		GFF4962	0.73	-1.4
4,959,599	+		GFF4962	0.73	+0.4
4,959,607	-		GFF4962	0.74	-1.0
4,959,607	-		GFF4962	0.74	+0.1
4,959,607	-		GFF4962	0.74	-2.4
4,959,607	-		GFF4962	0.74	-2.9
4,959,607	-		GFF4962	0.74	-0.0
4,959,609	+		GFF4962	0.74	-3.7
4,959,647	-		GFF4962	0.78	-2.0
4,959,658	-		GFF4962	0.79	+0.5
4,959,669	-		GFF4962	0.79	-0.0
4,959,676	-		GFF4962	0.80	-1.2
4,959,688	+		GFF4962	0.81	-1.6
4,959,688	+		GFF4962	0.81	-0.0
4,959,718	+		GFF4962	0.84	-0.4
4,959,718	+		GFF4962	0.84	-2.0
4,959,718	-		GFF4962	0.84	-2.0
4,959,718	-		GFF4962	0.84	-1.9
4,959,759	+		GFF4962	0.87	-0.4
4,959,784	+		GFF4962	0.89	-0.4
4,959,786	-		GFF4962	0.90	+0.0
4,959,789	+		GFF4962	0.90	+0.0
4,959,789	+		GFF4962	0.90	+0.3
4,959,794	+				-1.6
4,959,794	+				-1.4
4,959,794	+				-0.6
4,959,797	-				-0.5
4,959,797	-				-1.0
4,959,797	-				-0.3
4,959,797	-				+0.9
4,959,799	+				+0.1
4,959,799	+				-2.1
4,959,802	-				-1.9
4,959,802	-				-0.2
4,959,802	-				-0.5
4,959,802	-				-1.3
4,959,807	-				-1.2
4,959,807	-				+0.3
4,959,807	-				+1.7
4,959,807	-				-2.4
4,959,849	+				-0.2
4,959,849	+				+1.2
4,959,854	+				-0.2
4,959,854	+				-0.4
4,959,857	-				+0.7
4,959,857	-				+0.0
4,959,862	-				-1.0
4,959,867	-				-0.5
4,959,867	-				+0.4
4,959,867	-				-0.2
4,959,908	-				+0.2
4,959,943	+				-0.7
4,959,955	+				+1.0
4,959,955	+				-1.4
4,959,963	-				+0.0
4,959,963	-				-0.2
4,959,963	-				+0.3
4,959,963	-				-0.2
4,959,963	-				-0.5
4,959,963	-				+0.5
4,959,975	-				-1.9
4,959,979	+				-0.9
4,959,979	+				-0.3
4,959,987	-				-0.6
4,959,987	-				+0.1
4,959,987	-				-0.9
4,959,987	-				-0.0
4,959,987	-				+0.2
4,959,987	-				-1.8
4,959,997	+				-2.4
4,960,014	+				+0.8
4,960,041	+				-0.1
4,960,044	-				-2.0
4,960,049	-				-0.5
4,960,057	+				+0.1
4,960,063	+				-0.2
4,960,063	+				-1.1
4,960,065	-				+0.1
4,960,080	+				+0.4
4,960,086	-				-1.4
4,960,111	+				-1.9
4,960,148	-		GFF4963	0.12	-0.3
4,960,168	-		GFF4963	0.13	+0.7
4,960,266	-		GFF4963	0.18	-0.5
4,960,274	+		GFF4963	0.19	-0.5
4,960,282	-		GFF4963	0.19	-0.4
4,960,300	+		GFF4963	0.20	+1.0
4,960,300	+		GFF4963	0.20	-0.4
4,960,300	+		GFF4963	0.20	+0.2
4,960,308	-		GFF4963	0.20	-0.1
4,960,319	+		GFF4963	0.21	+0.3
4,960,324	+		GFF4963	0.21	-1.4
4,960,327	-		GFF4963	0.21	-0.7
4,960,332	-		GFF4963	0.22	-0.4
4,960,332	-		GFF4963	0.22	-1.8
4,960,347	+		GFF4963	0.23	-1.3
4,960,368	-		GFF4963	0.24	+1.1
4,960,370	-		GFF4963	0.24	-2.8
4,960,378	-		GFF4963	0.24	-1.1
4,960,406	+		GFF4963	0.26	-1.0
4,960,417	+		GFF4963	0.26	-0.3
4,960,425	-		GFF4963	0.27	-0.7
4,960,446	+		GFF4963	0.28	-0.4
4,960,454	-		GFF4963	0.28	+0.1
4,960,455	-		GFF4963	0.28	-0.2
4,960,472	-		GFF4963	0.29	-0.6
4,960,472	-		GFF4963	0.29	-2.4
4,960,490	+		GFF4963	0.30	-1.3
4,960,498	-		GFF4963	0.31	-0.3
4,960,516	-		GFF4963	0.32	-1.9
4,960,518	+		GFF4963	0.32	-0.2
4,960,519	+		GFF4963	0.32	-0.4
4,960,524	-		GFF4963	0.32	-0.7
4,960,571	+		GFF4963	0.35	-0.9
4,960,597	+		GFF4963	0.36	+0.1
4,960,628	+		GFF4963	0.38	-1.0
4,960,628	+		GFF4963	0.38	-0.5
4,960,636	-		GFF4963	0.38	-1.0
4,960,636	-		GFF4963	0.38	+0.9
4,960,664	+		GFF4963	0.40	-2.8
4,960,665	-		GFF4963	0.40	+0.8
4,960,672	-		GFF4963	0.40	+0.9
4,960,694	-		GFF4963	0.42	-1.9
4,960,694	-		GFF4963	0.42	+1.2
4,960,733	+		GFF4963	0.44	-1.3
4,960,748	+		GFF4963	0.45	-0.7
4,960,756	-		GFF4963	0.45	-0.0
4,960,756	-		GFF4963	0.45	+0.1
4,960,757	+		GFF4963	0.45	-0.1
4,960,765	-		GFF4963	0.45	-2.0
4,960,769	+		GFF4963	0.46	-0.7
4,960,769	+		GFF4963	0.46	+0.1
4,960,769	+		GFF4963	0.46	-1.6
4,960,775	-		GFF4963	0.46	-0.3
4,960,777	+		GFF4963	0.46	-1.5
4,960,777	-		GFF4963	0.46	-2.3
4,960,777	-		GFF4963	0.46	+0.4
4,960,777	-		GFF4963	0.46	+0.7
4,960,785	-		GFF4963	0.47	-1.6
4,960,785	-		GFF4963	0.47	-2.0
4,960,785	-		GFF4963	0.47	+0.1
4,960,790	+		GFF4963	0.47	-0.1
4,960,798	-		GFF4963	0.47	-0.1
4,960,798	-		GFF4963	0.47	-0.4
4,960,798	-		GFF4963	0.47	-1.8
4,960,798	-		GFF4963	0.47	-2.2
4,960,798	-		GFF4963	0.47	-0.4
4,960,809	+		GFF4963	0.48	-0.2
4,960,809	+		GFF4963	0.48	-1.6
4,960,809	+		GFF4963	0.48	-0.0
4,960,813	-		GFF4963	0.48	-0.9
4,960,817	-		GFF4963	0.48	-1.2
4,960,817	-		GFF4963	0.48	-1.6
4,960,817	-		GFF4963	0.48	-0.5
4,960,817	-		GFF4963	0.48	-0.9
4,960,823	-		GFF4963	0.49	-0.4
4,960,824	+		GFF4963	0.49	-2.5
4,960,825	+		GFF4963	0.49	-0.8
4,960,833	-		GFF4963	0.49	-0.6
4,960,844	-		GFF4963	0.50	-1.4
4,960,844	-		GFF4963	0.50	+1.3
4,960,853	+		GFF4963	0.50	-0.5
4,960,866	-		GFF4963	0.51	+0.6
4,960,878	+		GFF4963	0.52	-0.5
4,960,884	+		GFF4963	0.52	+1.3
4,960,884	+		GFF4963	0.52	-2.7
4,960,886	-		GFF4963	0.52	-0.4
4,960,887	-		GFF4963	0.52	-0.0
4,960,889	+		GFF4963	0.52	+0.1
4,960,892	-		GFF4963	0.52	-0.6
4,960,914	-		GFF4963	0.54	-0.6
4,960,915	+		GFF4963	0.54	+0.7
4,960,917	+		GFF4963	0.54	+0.1
4,960,917	+		GFF4963	0.54	-0.3
4,960,923	+		GFF4963	0.54	+0.5
4,960,932	-		GFF4963	0.55	+0.2
4,960,942	+		GFF4963	0.55	+0.9
4,960,942	+		GFF4963	0.55	-0.7
4,960,950	-		GFF4963	0.56	+0.2
4,960,950	-		GFF4963	0.56	-0.4
4,960,950	-		GFF4963	0.56	-0.2
4,960,964	-		GFF4963	0.56	-0.1
4,960,964	-		GFF4963	0.56	-0.5
4,960,974	-		GFF4963	0.57	-0.6
4,960,981	+		GFF4963	0.57	-0.0
4,960,981	+		GFF4963	0.57	-1.5
4,960,981	+		GFF4963	0.57	-2.2
4,960,981	+		GFF4963	0.57	-2.2
4,960,981	+		GFF4963	0.57	+0.2
4,960,981	+		GFF4963	0.57	-0.1
4,960,981	+		GFF4963	0.57	+0.6
4,960,981	+		GFF4963	0.57	-2.7
4,960,981	+		GFF4963	0.57	-0.5
4,960,981	+		GFF4963	0.57	-0.8
4,960,981	+		GFF4963	0.57	+0.7
4,960,981	+		GFF4963	0.57	-0.0
4,960,981	+		GFF4963	0.57	-3.0
4,960,981	+		GFF4963	0.57	-2.5
4,960,989	-		GFF4963	0.58	-0.6
4,960,989	-		GFF4963	0.58	+0.1
4,960,989	-		GFF4963	0.58	-0.1
4,960,989	-		GFF4963	0.58	+0.2
4,960,989	-		GFF4963	0.58	-0.4
4,960,989	-		GFF4963	0.58	-1.7
4,960,989	-		GFF4963	0.58	+0.3
4,960,989	-		GFF4963	0.58	-1.6
4,960,989	-		GFF4963	0.58	-0.5
4,960,989	-		GFF4963	0.58	-0.1
4,960,989	-		GFF4963	0.58	-0.4
4,960,989	-		GFF4963	0.58	-1.9
4,960,989	-		GFF4963	0.58	-0.6
4,960,989	-		GFF4963	0.58	-0.7
4,960,994	-		GFF4963	0.58	+1.1
4,961,027	+		GFF4963	0.60	+2.0
4,961,027	+		GFF4963	0.60	+0.4
4,961,027	+		GFF4963	0.60	-2.0
4,961,027	+		GFF4963	0.60	-1.2
4,961,027	+		GFF4963	0.60	-1.4
4,961,027	+		GFF4963	0.60	+0.4
4,961,027	+		GFF4963	0.60	-1.5
4,961,027	+		GFF4963	0.60	-1.2
4,961,027	+		GFF4963	0.60	-1.1
4,961,027	+		GFF4963	0.60	-0.2
4,961,027	+		GFF4963	0.60	-0.6
4,961,027	+		GFF4963	0.60	-0.8
4,961,027	+		GFF4963	0.60	-1.0
4,961,027	+		GFF4963	0.60	+0.4
4,961,027	+		GFF4963	0.60	-0.8
4,961,027	+		GFF4963	0.60	-2.1
4,961,027	+		GFF4963	0.60	-1.7
4,961,027	+		GFF4963	0.60	-0.2
4,961,028	+		GFF4963	0.60	+0.0
4,961,030	-		GFF4963	0.60	-1.4
4,961,030	-		GFF4963	0.60	-2.3
4,961,035	-		GFF4963	0.60	-0.4
4,961,035	-		GFF4963	0.60	+0.7
4,961,035	-		GFF4963	0.60	-1.3
4,961,035	-		GFF4963	0.60	-1.9
4,961,035	-		GFF4963	0.60	-0.1
4,961,035	-		GFF4963	0.60	-0.7
4,961,035	-		GFF4963	0.60	+0.4
4,961,035	-		GFF4963	0.60	+0.2
4,961,035	-		GFF4963	0.60	-0.4
4,961,035	-		GFF4963	0.60	+1.1
4,961,035	-		GFF4963	0.60	-1.3
4,961,035	-		GFF4963	0.60	-0.6
4,961,035	-		GFF4963	0.60	-1.0
4,961,035	-		GFF4963	0.60	+0.1
4,961,035	-		GFF4963	0.60	-0.7
4,961,037	+		GFF4963	0.60	-0.3
4,961,037	+		GFF4963	0.60	-1.4
4,961,037	+		GFF4963	0.60	-1.4
4,961,037	+		GFF4963	0.60	+0.9
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4,961,037	+		GFF4963	0.60	-2.1
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4,961,045	-		GFF4963	0.61	-0.1
4,961,045	-		GFF4963	0.61	-1.9
4,961,045	-		GFF4963	0.61	-0.7
4,961,045	-		GFF4963	0.61	-1.0
4,961,045	-		GFF4963	0.61	+0.8
4,961,045	-		GFF4963	0.61	+0.4
4,961,050	-		GFF4963	0.61	-0.6
4,961,055	-		GFF4963	0.61	-0.4
4,961,057	+		GFF4963	0.61	-1.9
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4,961,076	-		GFF4963	0.62	-2.0
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4,961,091	+		GFF4963	0.63	+1.0
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4,961,159	-		GFF4963	0.67	-1.0
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4,961,197	-		GFF4963	0.69	+0.1
4,961,197	-		GFF4963	0.69	-0.9
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4,961,329	+		GFF4963	0.76	-0.7
4,961,329	+		GFF4963	0.76	-2.3
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4,961,337	-		GFF4963	0.77	+1.1
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4,961,350	+		GFF4963	0.78	-0.9
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4,961,358	-		GFF4963	0.78	-1.2
4,961,386	-		GFF4963	0.79	-0.9
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4,961,410	+		GFF4963	0.81	-0.5
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4,961,418	-		GFF4963	0.81	-0.3
4,961,423	-		GFF4963	0.82	+1.4
4,961,423	-		GFF4963	0.82	+0.4
4,961,433	-		GFF4963	0.82	-0.4
4,961,433	-		GFF4963	0.82	-0.7
4,961,433	-		GFF4963	0.82	-0.6
4,961,435	+		GFF4963	0.82	-1.6
4,961,437	+		GFF4963	0.82	-0.7
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4,961,443	-		GFF4963	0.83	-0.4
4,961,443	-		GFF4963	0.83	-0.7
4,961,454	+		GFF4963	0.83	-0.2
4,961,465	+		GFF4963	0.84	+1.3
4,961,476	+		GFF4963	0.84	-2.6
4,961,476	+		GFF4963	0.84	+0.3
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4,961,493	+		GFF4963	0.85	+0.3
4,961,493	+		GFF4963	0.85	+1.0
4,961,513	+		GFF4963	0.86	-2.1
4,961,518	+		GFF4963	0.87	-0.6
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4,961,574	-		GFF4963	0.90	-1.5
4,961,583	+				+0.4
4,961,593	+				+1.0
4,961,643	-				-0.4
4,961,689	-				+0.0
4,961,691	-				-0.2
4,961,691	-				-0.1
4,961,715	+				+0.3
4,961,723	-				-0.4
4,961,769	-				-1.1
4,961,779	-				-1.9
4,961,779	-				-1.6
4,961,825	-				+0.5
4,961,848	+				-1.4
4,961,848	+				-2.0
4,961,848	+				-1.1
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4,961,856	-				+0.7
4,961,856	-				+0.6
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