Strain Fitness in Sphingobium sp. HT1-2 around GFF4931

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,921,755	-		GFF4930	0.39	-0.3
4,921,763	-		GFF4930	0.40	-0.1
4,921,781	+		GFF4930	0.41	-1.1
4,921,789	-		GFF4930	0.42	-0.3
4,921,797	-		GFF4930	0.43	-1.1
4,921,823	+		GFF4930	0.45	-2.1
4,921,823	+		GFF4930	0.45	-0.6
4,921,838	-		GFF4930	0.46	-0.4
4,921,847	+		GFF4930	0.47	-1.8
4,921,860	+		GFF4930	0.48	-1.9
4,921,870	+		GFF4930	0.48	-1.0
4,921,870	+		GFF4930	0.48	+0.1
4,921,878	-		GFF4930	0.49	-2.9
4,921,908	+		GFF4930	0.51	-0.4
4,921,927	+		GFF4930	0.53	-1.6
4,921,940	+		GFF4930	0.54	-1.0
4,921,941	+		GFF4930	0.54	+1.3
4,921,949	-		GFF4930	0.55	-0.1
4,921,949	-		GFF4930	0.55	-0.4
4,921,957	-		GFF4930	0.55	-0.6
4,921,957	-		GFF4930	0.55	+0.9
4,921,991	+		GFF4930	0.58	+0.4
4,922,000	+		GFF4930	0.59	-0.9
4,922,000	-		GFF4930	0.59	+0.1
4,922,010	+		GFF4930	0.60	-0.2
4,922,043	+		GFF4930	0.62	-0.5
4,922,043	+		GFF4930	0.62	-0.5
4,922,046	-		GFF4930	0.62	+0.3
4,922,046	-		GFF4930	0.62	-0.9
4,922,059	+		GFF4930	0.63	-2.3
4,922,061	-		GFF4930	0.64	-0.6
4,922,064	+		GFF4930	0.64	-0.5
4,922,064	+		GFF4930	0.64	-2.1
4,922,065	+		GFF4930	0.64	-1.1
4,922,065	-		GFF4930	0.64	+0.2
4,922,067	-		GFF4930	0.64	+0.2
4,922,074	+		GFF4930	0.65	+0.3
4,922,112	+		GFF4930	0.68	+0.5
4,922,120	-		GFF4930	0.68	-1.5
4,922,137	-		GFF4930	0.70	-2.7
4,922,143	+		GFF4930	0.70	+0.2
4,922,183	+		GFF4930	0.73	-0.5
4,922,183	+		GFF4930	0.73	-0.4
4,922,183	+		GFF4930	0.73	-0.8
4,922,183	+		GFF4930	0.73	-0.0
4,922,191	-		GFF4930	0.74	-1.8
4,922,191	-		GFF4930	0.74	-1.3
4,922,193	+		GFF4930	0.74	+0.2
4,922,238	+		GFF4930	0.78	+0.2
4,922,248	+		GFF4930	0.79	-1.1
4,922,250	-		GFF4930	0.79	-0.2
4,922,284	-		GFF4930	0.81	-0.3
4,922,286	+		GFF4930	0.82	-0.2
4,922,286	+		GFF4930	0.82	-0.3
4,922,286	+		GFF4930	0.82	-1.9
4,922,294	-		GFF4930	0.82	-0.9
4,922,294	-		GFF4930	0.82	+0.2
4,922,320	+		GFF4930	0.84	-0.8
4,922,320	+		GFF4930	0.84	-0.8
4,922,325	+		GFF4930	0.85	+0.2
4,922,325	+		GFF4930	0.85	-1.7
4,922,328	-		GFF4930	0.85	+0.4
4,922,330	+		GFF4930	0.85	-1.6
4,922,333	-		GFF4930	0.85	-1.1
4,922,333	-		GFF4930	0.85	-1.4
4,922,357	+		GFF4930	0.87	-1.0
4,922,359	+		GFF4930	0.87	-2.0
4,922,361	+		GFF4930	0.88	-1.9
4,922,365	-		GFF4930	0.88	-0.7
4,922,367	-		GFF4930	0.88	-1.0
4,922,367	-		GFF4930	0.88	+0.3
4,922,380	+		GFF4930	0.89	-0.3
4,922,380	+		GFF4930	0.89	+0.1
4,922,380	+		GFF4930	0.89	-0.1
4,922,385	-		GFF4930	0.89	+0.1
4,922,388	-		GFF4930	0.90	-0.4
4,922,388	-		GFF4930	0.90	-0.2
4,922,390	+		GFF4930	0.90	-1.1
4,922,390	+		GFF4930	0.90	-0.4
4,922,390	+		GFF4930	0.90	-0.5
4,922,390	+		GFF4930	0.90	-0.3
4,922,390	+		GFF4930	0.90	+0.2
4,922,390	+		GFF4930	0.90	+0.8
4,922,390	+		GFF4930	0.90	-1.9
4,922,390	+		GFF4930	0.90	-0.4
4,922,390	+		GFF4930	0.90	-0.2
4,922,390	+		GFF4930	0.90	+0.8
4,922,390	+		GFF4930	0.90	+0.6
4,922,390	+		GFF4930	0.90	-2.2
4,922,390	+		GFF4930	0.90	-1.1
4,922,390	+		GFF4930	0.90	-2.0
4,922,390	+		GFF4930	0.90	-0.4
4,922,390	+		GFF4930	0.90	+1.2
4,922,390	+		GFF4930	0.90	-0.8
4,922,390	+		GFF4930	0.90	-0.7
4,922,390	+		GFF4930	0.90	-0.1
4,922,390	+		GFF4930	0.90	-1.9
4,922,390	+		GFF4930	0.90	-0.0
4,922,390	+		GFF4930	0.90	-1.4
4,922,390	+		GFF4930	0.90	-1.8
4,922,390	+		GFF4930	0.90	-1.0
4,922,390	+		GFF4930	0.90	-0.7
4,922,398	-				-0.2
4,922,398	-				-0.5
4,922,398	-				+0.2
4,922,398	-				+0.2
4,922,398	-				-0.5
4,922,398	-				+0.4
4,922,398	-				-1.7
4,922,398	-				-1.4
4,922,398	-				-2.4
4,922,398	-				-3.1
4,922,398	-				-0.5
4,922,398	-				+0.2
4,922,398	-				-0.7
4,922,398	-				-1.2
4,922,398	-				-1.2
4,922,398	-				-0.0
4,922,398	-				+1.8
4,922,398	-				+0.0
4,922,398	-				+0.7
4,922,398	-				-0.4
4,922,398	-				-1.2
4,922,398	-				-0.3
4,922,398	-				-0.2
4,922,398	-				+0.3
4,922,398	-				-0.3
4,922,423	-				-0.7
4,922,431	-				-0.9
4,922,432	-				-1.0
4,922,433	+				-0.8
4,922,449	+				-0.0
4,922,480	+				-0.7
4,922,496	+				-1.0
4,922,496	+				-0.8
4,922,496	+				-0.5
4,922,496	+				-2.9
4,922,496	+				-0.2
4,922,496	+				-1.9
4,922,496	+				-0.9
4,922,504	-				-0.4
4,922,504	-				-0.7
4,922,504	-				-0.6
4,922,504	-				-2.2
4,922,509	-				-0.8
4,922,513	-				-1.8
4,922,513	-				-1.8
4,922,513	-				-0.2
4,922,531	+				+0.4
4,922,534	-				-0.0
4,922,535	-				-0.7
4,922,539	-				+0.3
4,922,539	-				-0.6
4,922,546	+				+0.1
4,922,556	+				-1.3
4,922,561	+				+0.4
4,922,561	+				-1.0
4,922,566	-				+0.7
4,922,602	+				+0.1
4,922,610	-				-0.1
4,922,660	+				-0.0
4,922,668	-				-2.7
4,922,668	-				-0.2
4,922,692	+				-0.8
4,922,697	+				-1.7
4,922,697	+				-0.2
4,922,702	+				+0.0
4,922,705	-				-1.1
4,922,727	+				-1.0
4,922,727	+				-0.8
4,922,727	+				-0.4
4,922,727	+				-2.1
4,922,735	-				-2.6
4,922,735	-				+0.2
4,922,750	+				-0.7
4,922,753	-				-1.2
4,922,753	-				-2.0
4,922,753	-				-0.0
4,922,787	-		GFF4931	0.16	-0.8
4,922,828	+		GFF4931	0.33	+0.9
4,922,855	+		GFF4931	0.45	+1.3
4,922,857	-		GFF4931	0.46	-0.7
4,922,864	-		GFF4931	0.49	-0.9
4,922,864	-		GFF4931	0.49	+0.6
4,922,877	+		GFF4931	0.55	-1.7
4,922,877	+		GFF4931	0.55	-0.2
4,922,877	+		GFF4931	0.55	-1.1
4,922,911	+		GFF4931	0.69	-1.7
4,922,911	+		GFF4931	0.69	-1.0
4,922,914	-		GFF4931	0.71	-0.1
4,922,914	-		GFF4931	0.71	+1.6
4,922,919	-		GFF4931	0.73	-0.9
4,922,921	+		GFF4931	0.74	-1.9
4,922,940	+		GFF4931	0.82	+0.7
4,922,948	-		GFF4931	0.85	+0.2
4,922,975	+				-1.7
4,922,975	+				-0.5
4,922,977	-				-0.1
4,922,977	-				-2.1
4,922,989	+				-0.2
4,922,989	+				-1.3
4,923,029	-				-0.2
4,923,033	+				-0.5
4,923,043	-				+1.3
4,923,043	-				+0.8
4,923,043	-				+0.2
4,923,061	+				-1.1
4,923,075	-				-0.5
4,923,077	+				-0.8
4,923,085	-				-0.6
4,923,089	+		GFF4932	0.10	-1.7
4,923,109	+		GFF4932	0.13	-0.2
4,923,117	-		GFF4932	0.14	-1.4
4,923,129	+		GFF4932	0.15	-1.0
4,923,159	-		GFF4932	0.19	-2.3
4,923,159	-		GFF4932	0.19	+0.3
4,923,169	-		GFF4932	0.20	-0.1
4,923,219	+		GFF4932	0.26	-1.8
4,923,226	-		GFF4932	0.27	-0.7
4,923,228	-		GFF4932	0.27	+0.0
4,923,229	+		GFF4932	0.27	-0.8
4,923,229	+		GFF4932	0.27	+0.8
4,923,231	+		GFF4932	0.27	+0.5
4,923,231	+		GFF4932	0.27	-0.5
4,923,231	+		GFF4932	0.27	-0.4
4,923,237	-		GFF4932	0.28	+0.0
4,923,237	-		GFF4932	0.28	-1.1
4,923,237	-		GFF4932	0.28	-1.0
4,923,239	+		GFF4932	0.28	-1.9
4,923,239	-		GFF4932	0.28	-0.4
4,923,244	+		GFF4932	0.29	-2.2
4,923,247	-		GFF4932	0.29	-2.6
4,923,249	+		GFF4932	0.29	-0.3
4,923,249	+		GFF4932	0.29	-1.8
4,923,249	+		GFF4932	0.29	+0.2
4,923,249	+		GFF4932	0.29	-0.7
4,923,249	+		GFF4932	0.29	-2.5
4,923,250	+		GFF4932	0.29	+0.3
4,923,250	+		GFF4932	0.29	-1.1
4,923,250	+		GFF4932	0.29	-0.2
4,923,255	+		GFF4932	0.30	-0.1
4,923,257	-		GFF4932	0.30	-0.5
4,923,257	-		GFF4932	0.30	-1.4
4,923,257	-		GFF4932	0.30	-2.1
4,923,257	-		GFF4932	0.30	-1.8
4,923,257	-		GFF4932	0.30	-0.6
4,923,274	+		GFF4932	0.32	-1.2
4,923,288	+		GFF4932	0.34	-0.0
4,923,289	-		GFF4932	0.34	-0.8
4,923,295	+		GFF4932	0.35	+1.0
4,923,313	-		GFF4932	0.37	-1.5
4,923,326	-		GFF4932	0.39	-0.1
4,923,327	-		GFF4932	0.39	-1.5
4,923,330	+		GFF4932	0.39	-0.2
4,923,330	+		GFF4932	0.39	-0.4
4,923,330	+		GFF4932	0.39	-3.1
4,923,330	+		GFF4932	0.39	-1.3
4,923,338	-		GFF4932	0.40	-0.4
4,923,342	-		GFF4932	0.41	+0.2
4,923,361	+		GFF4932	0.43	-0.1
4,923,376	-		GFF4932	0.45	-2.3
4,923,378	+		GFF4932	0.45	-2.6
4,923,387	-		GFF4932	0.46	-0.6
4,923,420	+		GFF4932	0.50	-1.8
4,923,427	-		GFF4932	0.51	-2.0
4,923,434	-		GFF4932	0.52	-2.5
4,923,452	-		GFF4932	0.54	-0.3
4,923,455	+		GFF4932	0.54	-0.9
4,923,464	+		GFF4932	0.55	-1.3
4,923,474	+		GFF4932	0.56	-1.7
4,923,481	+		GFF4932	0.57	-2.0
4,923,482	-		GFF4932	0.57	-0.5
4,923,482	-		GFF4932	0.57	-0.8
4,923,484	+		GFF4932	0.58	-0.3
4,923,484	+		GFF4932	0.58	-1.8
4,923,485	+		GFF4932	0.58	-1.3
4,923,492	-		GFF4932	0.59	-0.5
4,923,492	-		GFF4932	0.59	-0.3
4,923,492	-		GFF4932	0.59	-1.1
4,923,492	-		GFF4932	0.59	-0.9
4,923,492	-		GFF4932	0.59	-2.6
4,923,502	+		GFF4932	0.60	-0.2
4,923,513	+		GFF4932	0.61	+0.8
4,923,513	+		GFF4932	0.61	-0.4
4,923,515	+		GFF4932	0.61	-1.5
4,923,525	+		GFF4932	0.62	+0.2
4,923,525	+		GFF4932	0.62	-1.6
4,923,525	+		GFF4932	0.62	-0.0
4,923,525	+		GFF4932	0.62	-0.3
4,923,525	+		GFF4932	0.62	-1.6
4,923,525	+		GFF4932	0.62	+0.6
4,923,525	+		GFF4932	0.62	-1.2
4,923,526	-		GFF4932	0.63	-0.8
4,923,531	-		GFF4932	0.63	-1.0
4,923,531	-		GFF4932	0.63	-0.3
4,923,533	-		GFF4932	0.63	-0.2
4,923,533	-		GFF4932	0.63	-0.9
4,923,533	-		GFF4932	0.63	-0.4
4,923,533	-		GFF4932	0.63	-0.1
4,923,533	-		GFF4932	0.63	+0.3
4,923,533	-		GFF4932	0.63	-2.4
4,923,533	-		GFF4932	0.63	-1.2
4,923,533	-		GFF4932	0.63	-0.5
4,923,533	-		GFF4932	0.63	-1.0
4,923,533	-		GFF4932	0.63	-0.8
4,923,533	-		GFF4932	0.63	-1.0
4,923,546	-		GFF4932	0.65	-1.7
4,923,566	+		GFF4932	0.67	+0.7
4,923,566	+		GFF4932	0.67	-1.0
4,923,566	+		GFF4932	0.67	-0.1
4,923,571	+		GFF4932	0.68	-0.1
4,923,572	-		GFF4932	0.68	-1.7
4,923,574	-		GFF4932	0.68	-0.7
4,923,576	+		GFF4932	0.69	-1.9
4,923,576	+		GFF4932	0.69	-2.2
4,923,576	+		GFF4932	0.69	-1.9
4,923,578	-		GFF4932	0.69	-0.9
4,923,579	-		GFF4932	0.69	-1.8
4,923,579	-		GFF4932	0.69	-2.7
4,923,584	-		GFF4932	0.70	-1.8
4,923,584	-		GFF4932	0.70	-0.2
4,923,584	-		GFF4932	0.70	-1.9
4,923,584	-		GFF4932	0.70	-1.4
4,923,584	-		GFF4932	0.70	-2.7
4,923,587	+		GFF4932	0.70	-0.3
4,923,587	+		GFF4932	0.70	-0.6
4,923,587	+		GFF4932	0.70	-0.7
4,923,587	+		GFF4932	0.70	-0.4
4,923,589	-		GFF4932	0.70	-1.4
4,923,609	+		GFF4932	0.73	-1.6
4,923,609	+		GFF4932	0.73	+0.6
4,923,617	-		GFF4932	0.74	-0.9
4,923,631	+		GFF4932	0.75	+1.1
4,923,638	-		GFF4932	0.76	-1.0
4,923,657	+		GFF4932	0.78	-0.7
4,923,663	+		GFF4932	0.79	-1.1
4,923,676	-		GFF4932	0.81	-0.9
4,923,695	-		GFF4932	0.83	-0.2
4,923,703	+		GFF4932	0.84	+0.3
4,923,703	-		GFF4932	0.84	+0.4
4,923,705	+		GFF4932	0.84	+0.1
4,923,705	+		GFF4932	0.84	-0.7
4,923,706	-		GFF4932	0.84	-0.6
4,923,710	+		GFF4932	0.85	-1.7
4,923,711	-		GFF4932	0.85	+0.8
4,923,711	-		GFF4932	0.85	+1.2
4,923,713	-		GFF4932	0.85	-0.6
4,923,713	-		GFF4932	0.85	-1.3
4,923,744	-		GFF4932	0.89	-2.1
4,923,744	-		GFF4932	0.89	-1.5
4,923,763	+				-0.4
4,923,768	-				-2.0
4,923,779	+				+1.1
4,923,788	+				+0.8
4,923,789	+				+0.7
4,923,803	-				-1.4
4,923,803	-				-1.7
4,923,805	+				-0.3
4,923,831	+				-0.4
4,923,831	+				-2.2
4,923,831	+				-0.2
4,923,831	+				+0.0
4,923,831	+				-0.2
4,923,831	+				-1.8
4,923,831	+				-0.4
4,923,831	+				-1.9
4,923,831	+				-1.4
4,923,831	+				+1.0
4,923,831	+				-0.3
4,923,831	+				-0.0
4,923,831	+				-0.7
4,923,839	-				-0.2
4,923,839	-				-1.9
4,923,839	-				-1.1
4,923,839	-				-1.7
4,923,839	-				-0.9
4,923,839	-				-0.2
4,923,839	-				-1.3
4,923,839	-				+0.7
4,923,914	-				-1.8
4,923,929	-				+1.0
4,923,929	-				-1.0
4,923,934	-				-0.7
4,923,956	-				-0.9
4,923,956	-				-3.1
4,923,968	-				-0.5
4,923,981	+				-0.7