Strain Fitness in Sphingobium sp. HT1-2 around GFF4928

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,918,700	+		GFF4926	0.76	-0.1
4,918,708	-		GFF4926	0.77	-2.1
4,918,713	-		GFF4926	0.78	-1.3
4,918,721	-		GFF4926	0.78	+0.0
4,918,740	-		GFF4926	0.80	-0.8
4,918,785	-		GFF4926	0.85	-0.6
4,918,826	+		GFF4926	0.89	-0.8
4,918,826	+		GFF4926	0.89	-1.1
4,918,855	-				-2.0
4,918,855	-				+0.5
4,918,862	+				-1.6
4,918,870	-				-0.8
4,918,888	-				-2.5
4,918,897	+				+0.7
4,918,897	+				-0.9
4,918,905	-				-1.7
4,918,944	+				-0.2
4,918,946	+				-1.3
4,918,952	-				+1.0
4,918,965	+				-0.4
4,918,965	+				-1.6
4,918,965	+				+0.8
4,918,969	-				+0.5
4,918,973	-				+0.2
4,918,973	-				-0.2
4,918,973	-				-2.6
4,918,973	-				-0.1
4,918,973	-				-0.5
4,919,006	+				+0.1
4,919,019	+		GFF4927	0.10	-0.4
4,919,079	+		GFF4927	0.18	-1.9
4,919,079	-		GFF4927	0.18	-1.0
4,919,085	-		GFF4927	0.19	-0.3
4,919,094	+		GFF4927	0.20	+0.8
4,919,178	-		GFF4927	0.31	+1.8
4,919,186	+		GFF4927	0.32	+0.8
4,919,190	-		GFF4927	0.33	-0.3
4,919,207	+		GFF4927	0.35	-0.5
4,919,251	+		GFF4927	0.41	+0.5
4,919,251	+		GFF4927	0.41	-0.6
4,919,259	-		GFF4927	0.42	+0.4
4,919,275	+		GFF4927	0.44	-1.5
4,919,285	+		GFF4927	0.46	+0.3
4,919,285	+		GFF4927	0.46	-0.2
4,919,293	-		GFF4927	0.47	-1.2
4,919,323	+		GFF4927	0.51	-1.2
4,919,340	+		GFF4927	0.53	-0.2
4,919,348	-		GFF4927	0.54	-2.0
4,919,358	+		GFF4927	0.55	+0.2
4,919,363	+		GFF4927	0.56	-1.1
4,919,376	+		GFF4927	0.58	-0.6
4,919,376	+		GFF4927	0.58	-1.2
4,919,376	+		GFF4927	0.58	-1.6
4,919,384	-		GFF4927	0.59	-1.7
4,919,396	+		GFF4927	0.61	-3.3
4,919,396	+		GFF4927	0.61	-0.9
4,919,396	+		GFF4927	0.61	-3.6
4,919,400	-		GFF4927	0.61	-2.0
4,919,404	-		GFF4927	0.62	-0.6
4,919,406	+		GFF4927	0.62	-2.1
4,919,449	+		GFF4927	0.68	-2.1
4,919,449	+		GFF4927	0.68	-0.6
4,919,449	+		GFF4927	0.68	-1.0
4,919,449	+		GFF4927	0.68	-2.1
4,919,449	+		GFF4927	0.68	-1.6
4,919,457	-		GFF4927	0.69	-0.7
4,919,457	-		GFF4927	0.69	-1.2
4,919,474	+		GFF4927	0.71	-1.6
4,919,477	-		GFF4927	0.71	-1.2
4,919,506	-		GFF4927	0.75	+0.8
4,919,511	+		GFF4927	0.76	-1.5
4,919,512	+		GFF4927	0.76	-2.8
4,919,519	-		GFF4927	0.77	-1.1
4,919,519	-		GFF4927	0.77	-0.1
4,919,526	+		GFF4927	0.78	-0.5
4,919,534	-		GFF4927	0.79	-0.8
4,919,534	-		GFF4927	0.79	+0.2
4,919,545	+		GFF4927	0.80	+0.5
4,919,553	-		GFF4927	0.82	-0.0
4,919,555	-		GFF4927	0.82	-0.9
4,919,567	+		GFF4927	0.83	-2.1
4,919,570	-		GFF4927	0.84	-1.5
4,919,579	+		GFF4927	0.85	-0.4
4,919,597	-		GFF4927	0.87	-0.7
4,919,661	+				-1.6
4,919,680	+				-1.6
4,919,680	+				-1.4
4,919,694	+				+0.4
4,919,702	-				-1.3
4,919,708	-				-2.0
4,919,719	-				-0.9
4,919,750	-				-1.1
4,919,753	+				-1.0
4,919,757	+				-1.2
4,919,758	+				+0.0
4,919,766	-				-1.0
4,919,766	-				-0.5
4,919,766	-				-1.3
4,919,766	-				-2.3
4,919,766	-				-1.1
4,919,814	-		GFF4928	0.10	-0.6
4,919,828	+		GFF4928	0.11	-0.3
4,919,840	-		GFF4928	0.12	+0.3
4,919,876	+		GFF4928	0.15	+1.3
4,919,916	+		GFF4928	0.19	-0.0
4,919,929	-		GFF4928	0.20	-1.6
4,919,931	+		GFF4928	0.20	-0.2
4,919,950	+		GFF4928	0.22	-1.4
4,919,951	+		GFF4928	0.22	-1.7
4,919,958	-		GFF4928	0.22	-2.5
4,919,959	-		GFF4928	0.23	+0.3
4,919,966	-		GFF4928	0.23	-2.0
4,919,967	-		GFF4928	0.23	-2.0
4,919,985	-		GFF4928	0.25	-0.5
4,920,011	+		GFF4928	0.27	-0.7
4,920,017	+		GFF4928	0.28	-0.8
4,920,025	-		GFF4928	0.28	-0.4
4,920,036	+		GFF4928	0.29	-0.7
4,920,039	-		GFF4928	0.29	-0.3
4,920,041	+		GFF4928	0.30	-2.0
4,920,044	-		GFF4928	0.30	-1.3
4,920,049	-		GFF4928	0.30	-0.7
4,920,049	-		GFF4928	0.30	-2.2
4,920,064	+		GFF4928	0.32	-0.2
4,920,064	+		GFF4928	0.32	-0.3
4,920,077	-		GFF4928	0.33	-0.6
4,920,078	+		GFF4928	0.33	+0.1
4,920,084	+		GFF4928	0.33	-0.2
4,920,086	-		GFF4928	0.33	-1.5
4,920,088	+		GFF4928	0.34	+1.1
4,920,088	+		GFF4928	0.34	-0.5
4,920,088	+		GFF4928	0.34	+0.0
4,920,088	+		GFF4928	0.34	-0.4
4,920,088	+		GFF4928	0.34	-0.1
4,920,088	+		GFF4928	0.34	-1.5
4,920,096	-		GFF4928	0.34	-2.3
4,920,096	-		GFF4928	0.34	-1.1
4,920,096	-		GFF4928	0.34	-1.3
4,920,120	-		GFF4928	0.36	+0.2
4,920,134	+		GFF4928	0.38	-0.0
4,920,143	+		GFF4928	0.38	-2.4
4,920,143	+		GFF4928	0.38	-1.2
4,920,144	+		GFF4928	0.38	-1.9
4,920,150	+		GFF4928	0.39	+0.9
4,920,152	-		GFF4928	0.39	-2.1
4,920,155	+		GFF4928	0.39	-0.1
4,920,158	-		GFF4928	0.40	-0.6
4,920,165	+		GFF4928	0.40	-2.2
4,920,168	-		GFF4928	0.40	-1.1
4,920,184	+		GFF4928	0.42	+0.8
4,920,186	-		GFF4928	0.42	-0.8
4,920,188	+		GFF4928	0.42	-1.5
4,920,197	-		GFF4928	0.43	-2.1
4,920,208	-		GFF4928	0.44	-0.3
4,920,217	+		GFF4928	0.45	-0.4
4,920,252	+		GFF4928	0.48	-0.1
4,920,252	+		GFF4928	0.48	+0.5
4,920,252	+		GFF4928	0.48	+0.6
4,920,252	+		GFF4928	0.48	+0.8
4,920,252	+		GFF4928	0.48	+0.7
4,920,260	-		GFF4928	0.48	-0.4
4,920,260	-		GFF4928	0.48	-0.5
4,920,269	+		GFF4928	0.49	-1.4
4,920,269	+		GFF4928	0.49	+1.0
4,920,270	-		GFF4928	0.49	-0.2
4,920,277	-		GFF4928	0.50	+0.0
4,920,279	+		GFF4928	0.50	+0.4
4,920,309	+		GFF4928	0.53	-0.7
4,920,309	+		GFF4928	0.53	-0.5
4,920,309	+		GFF4928	0.53	-2.3
4,920,314	+		GFF4928	0.53	+0.0
4,920,317	-		GFF4928	0.53	-1.4
4,920,317	-		GFF4928	0.53	+0.2
4,920,317	-		GFF4928	0.53	-0.5
4,920,317	-		GFF4928	0.53	-0.2
4,920,317	-		GFF4928	0.53	-0.0
4,920,317	-		GFF4928	0.53	+0.2
4,920,328	+		GFF4928	0.54	+0.0
4,920,341	-		GFF4928	0.55	-1.0
4,920,346	+		GFF4928	0.56	-0.1
4,920,346	-		GFF4928	0.56	-3.3
4,920,353	+		GFF4928	0.56	-1.2
4,920,353	+		GFF4928	0.56	+0.8
4,920,353	+		GFF4928	0.56	-0.4
4,920,353	+		GFF4928	0.56	+1.0
4,920,353	+		GFF4928	0.56	-2.8
4,920,353	+		GFF4928	0.56	-1.6
4,920,354	-		GFF4928	0.56	+0.2
4,920,354	-		GFF4928	0.56	-0.2
4,920,361	-		GFF4928	0.57	-2.3
4,920,361	-		GFF4928	0.57	-1.8
4,920,373	-		GFF4928	0.58	-2.2
4,920,391	+		GFF4928	0.60	-1.6
4,920,404	-		GFF4928	0.61	-2.2
4,920,404	-		GFF4928	0.61	-1.2
4,920,404	-		GFF4928	0.61	-2.7
4,920,454	-		GFF4928	0.65	-0.7
4,920,456	+		GFF4928	0.65	-0.2
4,920,456	+		GFF4928	0.65	-1.5
4,920,464	-		GFF4928	0.66	-0.5
4,920,464	-		GFF4928	0.66	-2.9
4,920,464	-		GFF4928	0.66	-0.2
4,920,489	+		GFF4928	0.68	-2.6
4,920,494	+		GFF4928	0.68	-1.4
4,920,502	-		GFF4928	0.69	-1.5
4,920,507	+		GFF4928	0.69	-2.2
4,920,517	-		GFF4928	0.70	+0.1
4,920,519	-		GFF4928	0.71	-1.3
4,920,527	+		GFF4928	0.71	-1.9
4,920,527	+		GFF4928	0.71	-3.3
4,920,528	+		GFF4928	0.71	-2.1
4,920,532	+		GFF4928	0.72	-1.0
4,920,535	-		GFF4928	0.72	-2.5
4,920,540	-		GFF4928	0.72	+0.2
4,920,545	-		GFF4928	0.73	-1.0
4,920,546	+		GFF4928	0.73	-0.9
4,920,554	-		GFF4928	0.74	+0.1
4,920,554	-		GFF4928	0.74	-3.1
4,920,595	-		GFF4928	0.77	-2.6
4,920,595	-		GFF4928	0.77	+0.6
4,920,602	-		GFF4928	0.78	-0.1
4,920,609	+		GFF4928	0.78	-2.1
4,920,617	-		GFF4928	0.79	+0.6
4,920,625	-		GFF4928	0.80	-1.7
4,920,660	+		GFF4928	0.83	-0.3
4,920,660	+		GFF4928	0.83	+0.4
4,920,680	+		GFF4928	0.84	+0.8
4,920,687	+		GFF4928	0.85	-0.4
4,920,694	-		GFF4928	0.86	-1.4
4,920,695	-		GFF4928	0.86	-0.7
4,920,695	-		GFF4928	0.86	+0.5
4,920,697	+		GFF4928	0.86	+0.4
4,920,715	-		GFF4928	0.87	-2.0
4,920,717	+		GFF4928	0.87	-2.8
4,920,725	-		GFF4928	0.88	-1.0
4,920,725	-		GFF4928	0.88	-0.7
4,920,725	-		GFF4928	0.88	-0.8
4,920,735	-		GFF4928	0.89	-1.6
4,920,775	+				+0.2
4,920,783	-				+0.5
4,920,783	-				-1.9
4,920,783	-				-0.5
4,920,785	-				-0.7
4,920,790	-				-0.6
4,920,800	-				-0.2
4,920,802	+				-1.5
4,920,804	-				-0.9
4,920,810	-				+0.1
4,920,832	+				-1.6
4,920,836	+				+0.1
4,920,836	+				+0.4
4,920,836	+				+0.2
4,920,836	+				-0.8
4,920,836	+				-0.3
4,920,836	+				-1.3
4,920,836	+				-1.5
4,920,844	-				-1.0
4,920,844	-				-0.2
4,920,844	-				+0.6
4,920,844	-				-0.3
4,920,844	-				-0.8
4,920,844	-				-0.4
4,920,868	-				-0.9
4,920,868	-				-1.3
4,920,869	+				-2.3
4,920,869	+				-0.1
4,920,877	-				+0.7
4,920,879	+				+1.0
4,920,879	+				-1.6
4,920,887	-				-1.9
4,920,887	-				-0.2
4,920,887	-				-0.7
4,920,895	+				-0.4
4,920,901	-		GFF4929	0.10	+0.8
4,920,903	+		GFF4929	0.11	-0.1
4,920,903	-		GFF4929	0.11	-0.1
4,920,935	-		GFF4929	0.19	+0.8
4,920,953	-		GFF4929	0.23	+0.8
4,920,975	+		GFF4929	0.29	-0.2
4,920,982	+		GFF4929	0.30	-0.2
4,920,985	+		GFF4929	0.31	+0.6
4,921,006	-		GFF4929	0.36	-0.3
4,921,021	+		GFF4929	0.40	-1.1
4,921,026	+		GFF4929	0.41	-0.5
4,921,026	+		GFF4929	0.41	-0.9
4,921,034	+		GFF4929	0.43	-1.7
4,921,034	-		GFF4929	0.43	+0.4
4,921,035	-		GFF4929	0.43	-1.1
4,921,035	-		GFF4929	0.43	-2.2
4,921,036	-		GFF4929	0.44	-1.6
4,921,036	-		GFF4929	0.44	-1.3
4,921,036	-		GFF4929	0.44	-0.2
4,921,036	-		GFF4929	0.44	-0.2
4,921,037	-		GFF4929	0.44	-2.0
4,921,040	+		GFF4929	0.45	+0.7
4,921,040	+		GFF4929	0.45	+1.2
4,921,040	+		GFF4929	0.45	-0.1
4,921,040	+		GFF4929	0.45	+0.2
4,921,040	+		GFF4929	0.45	-1.9
4,921,043	-		GFF4929	0.45	-1.9
4,921,048	-		GFF4929	0.47	-2.3
4,921,066	+		GFF4929	0.51	+0.1
4,921,074	-		GFF4929	0.53	-2.3
4,921,074	-		GFF4929	0.53	-0.6
4,921,092	-		GFF4929	0.58	+1.0
4,921,092	-		GFF4929	0.58	+0.1
4,921,103	-		GFF4929	0.60	-2.3
4,921,143	+		GFF4929	0.70	-2.7
4,921,149	+		GFF4929	0.72	-0.0
4,921,150	+		GFF4929	0.72	+0.9
4,921,154	-		GFF4929	0.73	+0.1
4,921,181	+		GFF4929	0.80	-1.0
4,921,189	-		GFF4929	0.81	+0.5
4,921,194	+		GFF4929	0.83	-0.4
4,921,215	-		GFF4929	0.88	-0.6
4,921,239	-				-1.3
4,921,242	+				-0.7
4,921,242	+				-0.2
4,921,242	+				-0.3
4,921,260	+				+0.4
4,921,270	+				-0.0
4,921,270	+				-0.4
4,921,270	+				-1.1
4,921,278	-				-0.7
4,921,278	-				-1.3
4,921,280	+				-0.2
4,921,280	+				-0.9
4,921,288	-				-1.0
4,921,288	-				-0.6
4,921,294	+				-0.8
4,921,312	+				-0.2
4,921,312	-				-0.0
4,921,321	+				-1.3
4,921,322	+				-3.0
4,921,329	-				-0.9
4,921,330	-				-2.5
4,921,330	-				-1.1
4,921,368	-				+0.6
4,921,406	+		GFF4930	0.11	-0.7
4,921,406	+		GFF4930	0.11	+0.5
4,921,412	+		GFF4930	0.12	-0.0
4,921,412	+		GFF4930	0.12	-0.3
4,921,414	-		GFF4930	0.12	+0.4
4,921,414	-		GFF4930	0.12	+0.0
4,921,420	-		GFF4930	0.13	-0.8
4,921,480	+		GFF4930	0.17	-1.2
4,921,488	-		GFF4930	0.18	+0.0
4,921,488	-		GFF4930	0.18	-0.4
4,921,505	+		GFF4930	0.19	-1.9
4,921,514	-		GFF4930	0.20	-0.7
4,921,522	+		GFF4930	0.21	+1.2
4,921,522	+		GFF4930	0.21	-0.6
4,921,522	+		GFF4930	0.21	-0.6
4,921,530	-		GFF4930	0.21	-0.1
4,921,530	-		GFF4930	0.21	+0.7
4,921,531	+		GFF4930	0.21	-0.2
4,921,561	+		GFF4930	0.24	-0.7
4,921,561	+		GFF4930	0.24	-0.3
4,921,561	+		GFF4930	0.24	+0.9
4,921,564	-		GFF4930	0.24	+0.3
4,921,569	-		GFF4930	0.24	-3.3
4,921,604	-		GFF4930	0.27	-1.7
4,921,605	+		GFF4930	0.27	-2.4
4,921,609	+		GFF4930	0.28	+0.6
4,921,610	+		GFF4930	0.28	+0.2
4,921,611	+		GFF4930	0.28	-1.1
4,921,618	-		GFF4930	0.28	-2.3
4,921,618	-		GFF4930	0.28	-1.9
4,921,620	+		GFF4930	0.28	-0.5
4,921,620	-		GFF4930	0.28	-0.2
4,921,625	+		GFF4930	0.29	+0.7
4,921,625	+		GFF4930	0.29	-1.4
4,921,651	+		GFF4930	0.31	-2.9
4,921,660	-		GFF4930	0.32	-0.4
4,921,660	-		GFF4930	0.32	-2.0
4,921,660	-		GFF4930	0.32	-0.5
4,921,663	+		GFF4930	0.32	-0.6
4,921,671	-		GFF4930	0.33	+0.2
4,921,709	+		GFF4930	0.36	-0.5
4,921,711	+		GFF4930	0.36	-0.1
4,921,715	+		GFF4930	0.36	-0.8
4,921,715	+		GFF4930	0.36	-0.5
4,921,715	+		GFF4930	0.36	-0.1
4,921,715	+		GFF4930	0.36	-1.0
4,921,723	+		GFF4930	0.37	-0.3
4,921,723	-		GFF4930	0.37	+0.2
4,921,723	-		GFF4930	0.37	-2.6
4,921,725	+		GFF4930	0.37	+0.4
4,921,725	+		GFF4930	0.37	+0.8
4,921,733	-		GFF4930	0.37	+0.2
4,921,737	+		GFF4930	0.38	+0.4
4,921,747	+		GFF4930	0.39	-0.8
4,921,747	+		GFF4930	0.39	-1.0
4,921,747	+		GFF4930	0.39	+0.6
4,921,755	-		GFF4930	0.39	-0.3
4,921,763	-		GFF4930	0.40	-0.1
4,921,781	+		GFF4930	0.41	-1.1
4,921,789	-		GFF4930	0.42	-0.3
4,921,797	-		GFF4930	0.43	-1.1
4,921,823	+		GFF4930	0.45	-2.1
4,921,823	+		GFF4930	0.45	-0.6
4,921,838	-		GFF4930	0.46	-0.4
4,921,847	+		GFF4930	0.47	-1.8
4,921,860	+		GFF4930	0.48	-1.9