Strain Fitness in Sphingobium sp. HT1-2 around GFF49

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF48 and GFF49 are separated by 69 nucleotidesGFF49 and GFF50 are separated by 66 nucleotides GFF48 - GTP-binding and nucleic acid-binding protein YchF, at 38,177 to 39,277 GFF48 GFF49 - hypothetical protein, at 39,347 to 40,057 GFF49 GFF50 - Phosphoglucomutase (EC 5.4.2.2), at 40,124 to 41,752 GFF50 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.426 kb on + strand, within GFF48at 38.871 kb on + strand, within GFF48at 39.216 kb on + strandat 39.334 kb on + strandat 39.339 kb on + strandat 39.339 kb on + strandat 39.342 kb on - strandat 39.347 kb on - strandat 39.354 kb on + strandat 39.354 kb on + strandat 39.362 kb on - strandat 39.362 kb on - strandat 39.372 kb on - strandat 39.399 kb on + strandat 39.407 kb on - strandat 39.444 kb on - strand, within GFF49at 39.482 kb on + strand, within GFF49at 39.502 kb on - strand, within GFF49at 39.508 kb on - strand, within GFF49at 39.522 kb on + strand, within GFF49at 39.526 kb on + strand, within GFF49at 39.527 kb on + strand, within GFF49at 39.530 kb on - strand, within GFF49at 39.530 kb on - strand, within GFF49at 39.536 kb on + strand, within GFF49at 39.536 kb on + strand, within GFF49at 39.540 kb on - strand, within GFF49at 39.549 kb on + strand, within GFF49at 39.549 kb on + strand, within GFF49at 39.549 kb on + strand, within GFF49at 39.555 kb on - strand, within GFF49at 39.582 kb on + strand, within GFF49at 39.590 kb on - strand, within GFF49at 39.608 kb on - strand, within GFF49at 39.610 kb on - strand, within GFF49at 39.619 kb on + strand, within GFF49at 39.620 kb on + strand, within GFF49at 39.627 kb on - strand, within GFF49at 39.629 kb on - strand, within GFF49at 39.653 kb on + strand, within GFF49at 39.658 kb on + strand, within GFF49at 39.658 kb on + strand, within GFF49at 39.658 kb on + strand, within GFF49at 39.661 kb on - strand, within GFF49at 39.691 kb on + strand, within GFF49at 39.699 kb on - strand, within GFF49at 39.701 kb on + strand, within GFF49at 39.704 kb on - strand, within GFF49at 39.721 kb on + strand, within GFF49at 39.721 kb on + strand, within GFF49at 39.729 kb on - strand, within GFF49at 39.731 kb on + strand, within GFF49at 39.749 kb on - strand, within GFF49at 39.764 kb on - strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.786 kb on + strand, within GFF49at 39.786 kb on + strand, within GFF49at 39.787 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.794 kb on - strand, within GFF49at 39.794 kb on - strand, within GFF49at 39.796 kb on + strand, within GFF49at 39.796 kb on + strand, within GFF49at 39.804 kb on - strand, within GFF49at 39.831 kb on + strand, within GFF49at 39.831 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.839 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.845 kb on - strand, within GFF49at 39.845 kb on - strand, within GFF49at 39.855 kb on - strand, within GFF49at 39.856 kb on - strand, within GFF49at 39.894 kb on + strand, within GFF49at 39.894 kb on + strand, within GFF49at 39.939 kb on + strand, within GFF49at 39.947 kb on - strand, within GFF49at 39.947 kb on - strand, within GFF49at 39.947 kb on - strand, within GFF49at 39.947 kb on - strand, within GFF49at 39.947 kb on - strand, within GFF49at 39.971 kb on - strand, within GFF49at 39.977 kb on - strand, within GFF49at 39.978 kb on + strand, within GFF49at 39.993 kb on + strandat 39.993 kb on + strandat 39.993 kb on + strandat 39.998 kb on + strandat 39.998 kb on + strandat 39.998 kb on + strandat 40.006 kb on - strandat 40.006 kb on - strandat 40.006 kb on - strandat 40.006 kb on - strandat 40.065 kb on + strandat 40.065 kb on + strandat 40.066 kb on + strandat 40.073 kb on - strandat 40.074 kb on - strandat 40.074 kb on - strandat 40.102 kb on + strandat 40.110 kb on - strandat 40.110 kb on - strandat 40.135 kb on - strandat 40.135 kb on - strandat 40.139 kb on + strandat 40.139 kb on + strandat 40.139 kb on + strandat 40.139 kb on + strandat 40.142 kb on - strandat 40.142 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.152 kb on - strandat 40.816 kb on - strand, within GFF50

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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38,426 + GFF48 0.23 -1.2
38,871 + GFF48 0.63 -1.2
39,216 + -1.2
39,334 + -0.2
39,339 + -0.6
39,339 + -0.6
39,342 - +0.2
39,347 - -1.0
39,354 + +0.0
39,354 + +0.0
39,362 - -0.3
39,362 - -0.4
39,372 - -2.0
39,399 + -0.1
39,407 - +0.7
39,444 - GFF49 0.14 -0.4
39,482 + GFF49 0.19 -0.9
39,502 - GFF49 0.22 +0.3
39,508 - GFF49 0.23 -0.9
39,522 + GFF49 0.25 -0.2
39,526 + GFF49 0.25 +0.7
39,527 + GFF49 0.25 +1.3
39,530 - GFF49 0.26 +0.0
39,530 - GFF49 0.26 +0.1
39,536 + GFF49 0.27 -0.9
39,536 + GFF49 0.27 -0.6
39,540 - GFF49 0.27 +0.8
39,549 + GFF49 0.28 +0.1
39,549 + GFF49 0.28 -1.5
39,549 + GFF49 0.28 +1.3
39,555 - GFF49 0.29 -0.9
39,582 + GFF49 0.33 -0.1
39,590 - GFF49 0.34 +0.3
39,608 - GFF49 0.37 +0.5
39,610 - GFF49 0.37 -0.9
39,619 + GFF49 0.38 +0.6
39,620 + GFF49 0.38 -1.7
39,627 - GFF49 0.39 -1.0
39,629 - GFF49 0.40 -0.8
39,653 + GFF49 0.43 -0.2
39,658 + GFF49 0.44 -0.1
39,658 + GFF49 0.44 +0.0
39,658 + GFF49 0.44 -0.5
39,661 - GFF49 0.44 -0.0
39,691 + GFF49 0.48 -0.1
39,699 - GFF49 0.50 -2.2
39,701 + GFF49 0.50 +1.3
39,704 - GFF49 0.50 -0.2
39,721 + GFF49 0.53 -2.3
39,721 + GFF49 0.53 -0.1
39,729 - GFF49 0.54 -1.1
39,731 + GFF49 0.54 -0.5
39,749 - GFF49 0.57 -0.2
39,764 - GFF49 0.59 -0.6
39,780 + GFF49 0.61 +0.4
39,780 + GFF49 0.61 -1.0
39,786 + GFF49 0.62 -1.7
39,786 + GFF49 0.62 -0.5
39,787 - GFF49 0.62 +0.5
39,788 - GFF49 0.62 +1.0
39,788 - GFF49 0.62 +0.9
39,788 - GFF49 0.62 +0.6
39,794 - GFF49 0.63 +0.6
39,794 - GFF49 0.63 -0.3
39,796 + GFF49 0.63 -1.2
39,796 + GFF49 0.63 +0.6
39,804 - GFF49 0.64 -0.6
39,831 + GFF49 0.68 +1.9
39,831 + GFF49 0.68 -0.2
39,836 + GFF49 0.69 -0.2
39,836 + GFF49 0.69 -0.2
39,836 + GFF49 0.69 +1.2
39,836 + GFF49 0.69 -0.5
39,836 + GFF49 0.69 -1.2
39,839 - GFF49 0.69 -1.4
39,844 - GFF49 0.70 -0.3
39,844 - GFF49 0.70 +0.9
39,844 - GFF49 0.70 -0.0
39,844 - GFF49 0.70 +0.1
39,845 - GFF49 0.70 -1.3
39,845 - GFF49 0.70 -0.5
39,855 - GFF49 0.71 +0.2
39,856 - GFF49 0.72 -1.0
39,894 + GFF49 0.77 +1.2
39,894 + GFF49 0.77 -0.5
39,939 + GFF49 0.83 -1.4
39,947 - GFF49 0.84 -0.7
39,947 - GFF49 0.84 -1.2
39,947 - GFF49 0.84 +0.2
39,947 - GFF49 0.84 +0.3
39,947 - GFF49 0.84 -0.2
39,971 - GFF49 0.88 +0.8
39,977 - GFF49 0.89 +0.4
39,978 + GFF49 0.89 +0.7
39,993 + +0.8
39,993 + +0.0
39,993 + -0.4
39,998 + +0.6
39,998 + +0.1
39,998 + -0.7
40,006 - +0.7
40,006 - -0.2
40,006 - +1.1
40,006 - -0.2
40,065 + +0.3
40,065 + -0.2
40,066 + +0.6
40,073 - -0.6
40,074 - -1.5
40,074 - +0.4
40,102 + +0.0
40,110 - -2.1
40,110 - +0.5
40,135 - +0.1
40,135 - -1.4
40,139 + -0.2
40,139 + -0.4
40,139 + +1.3
40,139 + -0.1
40,142 - +0.8
40,142 - -0.3
40,147 - +0.4
40,147 - -1.3
40,147 - +1.1
40,147 - +0.7
40,147 - -0.5
40,147 - -1.0
40,147 - +0.3
40,147 - -2.5
40,147 - -1.3
40,152 - -0.1
40,816 - GFF50 0.42 -2.0

Or see this region's nucleotide sequence