Strain Fitness in Sphingobium sp. HT1-2 around GFF4884

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,872,711	+		GFF4883	0.44	-1.3
4,872,716	+		GFF4883	0.44	+0.6
4,872,739	+		GFF4883	0.47	-0.3
4,872,747	-		GFF4883	0.47	+1.0
4,872,752	+		GFF4883	0.48	+0.0
4,872,752	-		GFF4883	0.48	-1.6
4,872,760	-		GFF4883	0.49	-0.8
4,872,766	+		GFF4883	0.49	-0.9
4,872,772	-		GFF4883	0.50	-1.4
4,872,800	+		GFF4883	0.53	+0.5
4,872,800	+		GFF4883	0.53	-0.0
4,872,808	-		GFF4883	0.54	-2.1
4,872,845	-		GFF4883	0.57	-0.0
4,872,845	-		GFF4883	0.57	-1.0
4,872,845	-		GFF4883	0.57	-0.5
4,872,856	+		GFF4883	0.58	-1.5
4,872,862	+		GFF4883	0.59	+0.1
4,872,864	+		GFF4883	0.59	+0.3
4,872,872	-		GFF4883	0.60	-2.1
4,872,872	-		GFF4883	0.60	-0.5
4,872,872	-		GFF4883	0.60	-0.3
4,872,872	-		GFF4883	0.60	+0.4
4,872,892	-		GFF4883	0.62	-0.2
4,872,893	+		GFF4883	0.62	+0.6
4,872,900	+		GFF4883	0.63	-2.7
4,872,908	-		GFF4883	0.64	+0.2
4,872,916	+		GFF4883	0.64	-0.6
4,872,916	+		GFF4883	0.64	-0.4
4,872,916	+		GFF4883	0.64	+0.1
4,872,924	-		GFF4883	0.65	-0.4
4,872,924	-		GFF4883	0.65	+0.4
4,872,924	-		GFF4883	0.65	-0.9
4,872,936	-		GFF4883	0.66	-1.3
4,872,961	+		GFF4883	0.69	+0.1
4,872,975	-		GFF4883	0.70	-0.5
4,872,989	+		GFF4883	0.72	-1.0
4,872,994	+		GFF4883	0.72	+1.3
4,872,994	+		GFF4883	0.72	+0.2
4,873,002	+		GFF4883	0.73	-0.0
4,873,007	+		GFF4883	0.74	-1.8
4,873,007	+		GFF4883	0.74	-0.1
4,873,007	+		GFF4883	0.74	+0.7
4,873,007	+		GFF4883	0.74	-0.8
4,873,007	+		GFF4883	0.74	+0.0
4,873,007	-		GFF4883	0.74	-0.4
4,873,015	-		GFF4883	0.74	+0.2
4,873,029	+		GFF4883	0.76	-0.3
4,873,037	-		GFF4883	0.77	-0.3
4,873,037	-		GFF4883	0.77	-0.2
4,873,047	+		GFF4883	0.78	-1.4
4,873,055	-		GFF4883	0.78	-0.1
4,873,068	-		GFF4883	0.80	+0.4
4,873,084	-		GFF4883	0.81	-0.2
4,873,095	+		GFF4883	0.82	-0.2
4,873,095	+		GFF4883	0.82	+0.2
4,873,103	-		GFF4883	0.83	-0.4
4,873,103	-		GFF4883	0.83	+0.6
4,873,103	-		GFF4883	0.83	-1.9
4,873,103	-		GFF4883	0.83	-0.2
4,873,103	-		GFF4883	0.83	-1.5
4,873,104	-		GFF4883	0.83	+0.0
4,873,127	+		GFF4883	0.86	-2.1
4,873,127	+		GFF4883	0.86	-1.2
4,873,127	+		GFF4883	0.86	+0.8
4,873,127	+		GFF4883	0.86	+0.4
4,873,135	-		GFF4883	0.86	+0.1
4,873,135	-		GFF4883	0.86	-0.3
4,873,135	-		GFF4883	0.86	-0.7
4,873,135	-		GFF4883	0.86	-0.9
4,873,135	-		GFF4883	0.86	+0.6
4,873,135	-		GFF4883	0.86	-2.2
4,873,140	+		GFF4883	0.87	-1.4
4,873,140	+		GFF4883	0.87	-0.4
4,873,140	+		GFF4883	0.87	+0.3
4,873,148	-		GFF4883	0.88	-0.3
4,873,148	-		GFF4883	0.88	-1.6
4,873,148	-		GFF4883	0.88	-0.2
4,873,161	+		GFF4883	0.89	-1.7
4,873,163	+		GFF4883	0.89	-0.9
4,873,163	+		GFF4883	0.89	-0.5
4,873,169	-		GFF4883	0.90	-1.4
4,873,169	-		GFF4883	0.90	+1.3
4,873,171	-				-0.0
4,873,171	-				-0.5
4,873,171	-				-0.5
4,873,173	+				+1.7
4,873,196	-				-1.5
4,873,198	-				+0.6
4,873,199	+				-0.7
4,873,203	-				+0.9
4,873,229	+				-2.2
4,873,229	+				+0.2
4,873,234	+				-0.5
4,873,234	+				+0.6
4,873,234	+				-1.4
4,873,237	-				+0.1
4,873,271	-				-0.4
4,873,289	-				-0.7
4,873,297	+				-0.7
4,873,297	+				+0.0
4,873,305	-				-0.1
4,873,316	+				-0.3
4,873,316	+				+0.0
4,873,316	+				+0.7
4,873,324	-				+0.2
4,873,324	-				-2.3
4,873,326	-				-0.5
4,873,327	+				+0.2
4,873,335	-				-0.8
4,873,335	-				+0.4
4,873,343	-				-1.9
4,873,360	+				+0.4
4,873,374	-				+0.0
4,873,383	-				+0.2
4,873,470	+				+0.1
4,873,472	+				+0.2
4,873,473	-				+0.4
4,873,477	+				-0.9
4,873,477	+				-1.2
4,873,478	-				-0.0
4,873,480	-				-0.0
4,873,485	-				-0.1
4,873,502	+				+0.8
4,873,503	+				-1.1
4,873,503	+				+0.3
4,873,503	+				+0.4
4,873,503	+				-2.7
4,873,503	+				+0.8
4,873,503	+				-2.1
4,873,503	-				-0.6
4,873,510	-				-0.0
4,873,511	-				+1.2
4,873,511	-				-0.6
4,873,511	-				-0.2
4,873,511	-				-1.3
4,873,511	-				-0.6
4,873,511	-				+0.7
4,873,525	+				-1.7
4,873,538	+				-0.8
4,873,557	-				+0.7
4,873,581	+				-0.1
4,873,589	-				-0.7
4,873,600	+				-0.5
4,873,601	+				-2.4
4,873,601	+				+0.1
4,873,608	-				-0.5
4,873,609	-				-1.5
4,873,609	-				-0.6
4,873,609	-				-0.4
4,873,609	-				-0.8
4,873,616	+				-0.5
4,873,616	+				+0.2
4,873,616	+				+0.7
4,873,616	-				+1.0
4,873,616	-				-1.1
4,873,622	+				-1.1
4,873,624	-				-0.1
4,873,630	-				-0.6
4,873,637	-				-1.0
4,873,640	+				-0.6
4,873,648	-				-1.6
4,873,648	-				-0.0
4,873,662	+				+0.4
4,873,672	+				-1.8
4,873,680	-				-0.3
4,873,680	-				-0.6
4,873,713	-				-1.8
4,873,716	+				+0.5
4,873,734	+				-2.6
4,873,737	-				+0.2
4,873,742	-				-0.1
4,873,756	-				-1.5
4,873,762	-				-0.6
4,873,776	-		GFF4884	0.12	-0.5
4,873,777	-		GFF4884	0.12	-1.7
4,873,784	+		GFF4884	0.13	-1.4
4,873,800	+		GFF4884	0.15	-1.3
4,873,842	-		GFF4884	0.20	-0.4
4,873,856	+		GFF4884	0.22	+0.2
4,873,869	-		GFF4884	0.24	-1.2
4,873,891	-		GFF4884	0.26	+0.2
4,873,893	+		GFF4884	0.27	-0.1
4,873,902	+		GFF4884	0.28	-0.7
4,873,905	-		GFF4884	0.28	+1.0
4,873,909	+		GFF4884	0.29	+0.7
4,873,924	+		GFF4884	0.31	-1.5
4,873,953	+		GFF4884	0.34	-1.9
4,873,953	+		GFF4884	0.34	-2.2
4,873,961	-		GFF4884	0.35	+0.8
4,873,961	-		GFF4884	0.35	-0.3
4,873,961	-		GFF4884	0.35	-1.4
4,873,994	+		GFF4884	0.40	-0.7
4,873,994	+		GFF4884	0.40	+0.1
4,874,002	+		GFF4884	0.41	-0.4
4,874,021	+		GFF4884	0.43	+0.5
4,874,021	+		GFF4884	0.43	+1.7
4,874,021	+		GFF4884	0.43	+0.2
4,874,021	+		GFF4884	0.43	-1.2
4,874,026	+		GFF4884	0.44	-2.8
4,874,029	-		GFF4884	0.44	-0.4
4,874,030	+		GFF4884	0.44	-1.6
4,874,031	+		GFF4884	0.44	+0.2
4,874,034	-		GFF4884	0.45	-1.0
4,874,034	-		GFF4884	0.45	+0.1
4,874,047	+		GFF4884	0.46	-2.0
4,874,096	+		GFF4884	0.53	-1.1
4,874,107	+		GFF4884	0.54	+0.6
4,874,127	+		GFF4884	0.57	+2.1
4,874,127	+		GFF4884	0.57	+0.1
4,874,135	-		GFF4884	0.58	-0.1
4,874,149	+		GFF4884	0.59	-0.5
4,874,154	+		GFF4884	0.60	-0.5
4,874,171	-		GFF4884	0.62	-0.6
4,874,176	+		GFF4884	0.63	+1.2
4,874,193	+		GFF4884	0.65	-0.9
4,874,201	-		GFF4884	0.66	-0.4
4,874,201	-		GFF4884	0.66	-1.9
4,874,201	-		GFF4884	0.66	-0.2
4,874,201	-		GFF4884	0.66	+0.5
4,874,201	-		GFF4884	0.66	-2.6
4,874,201	-		GFF4884	0.66	-1.2
4,874,201	-		GFF4884	0.66	+1.0
4,874,253	+		GFF4884	0.73	+1.2
4,874,295	-		GFF4884	0.78	-2.4
4,874,295	-		GFF4884	0.78	-1.0
4,874,300	-		GFF4884	0.79	-0.6
4,874,300	-		GFF4884	0.79	+0.9
4,874,310	+		GFF4884	0.80	+1.5
4,874,314	+		GFF4884	0.80	+0.7
4,874,314	+		GFF4884	0.80	-0.5
4,874,318	-		GFF4884	0.81	-1.1
4,874,340	+		GFF4884	0.84	-0.0
4,874,340	+		GFF4884	0.84	-0.9
4,874,340	+		GFF4884	0.84	+0.3
4,874,340	+		GFF4884	0.84	-2.3
4,874,340	+		GFF4884	0.84	+0.2
4,874,348	-		GFF4884	0.85	-0.7
4,874,348	-		GFF4884	0.85	-1.0
4,874,375	+		GFF4884	0.88	+0.2
4,874,379	-		GFF4884	0.89	-0.1
4,874,480	-				-0.8
4,874,485	+				-0.5
4,874,485	+				-0.3
4,874,493	-				-0.5
4,874,493	-				+0.6
4,874,568	-				+0.4
4,874,569	+				-1.1
4,874,569	+				-1.6
4,874,569	+				-1.4
4,874,569	+				-0.8
4,874,577	-				-1.9
4,874,577	-				-1.9
4,874,577	-				+0.5
4,874,577	-				-1.7
4,874,577	-				-0.3
4,874,621	+				+0.1
4,874,644	+				-2.2
4,874,664	-				-1.3
4,874,727	-				-0.8
4,874,727	-				+1.8
4,874,760	+		GFF4885	0.13	-1.2
4,874,760	+		GFF4885	0.13	+0.3
4,874,765	+		GFF4885	0.14	-0.4
4,874,773	-		GFF4885	0.15	-1.5
4,874,787	+		GFF4885	0.18	-0.8
4,874,806	-		GFF4885	0.21	-0.5
4,874,856	+		GFF4885	0.30	+0.5
4,874,924	+		GFF4885	0.43	+1.3
4,874,924	+		GFF4885	0.43	+1.0
4,874,934	+		GFF4885	0.44	+0.4
4,874,962	+		GFF4885	0.50	+0.5
4,874,985	+		GFF4885	0.54	-2.2
4,874,985	+		GFF4885	0.54	+0.2
4,874,985	+		GFF4885	0.54	+0.6
4,874,993	-		GFF4885	0.55	-1.9
4,874,993	-		GFF4885	0.55	+0.8
4,875,016	+		GFF4885	0.59	+0.5
4,875,016	+		GFF4885	0.59	-1.5
4,875,046	-		GFF4885	0.65	-0.7
4,875,060	+		GFF4885	0.67	-0.7
4,875,060	+		GFF4885	0.67	-0.3
4,875,067	-		GFF4885	0.69	-0.8
4,875,068	-		GFF4885	0.69	-0.5
4,875,068	-		GFF4885	0.69	+0.7
4,875,068	-		GFF4885	0.69	+0.6
4,875,068	-		GFF4885	0.69	-0.6
4,875,092	+		GFF4885	0.73	-0.0
4,875,092	+		GFF4885	0.73	-1.3
4,875,092	+		GFF4885	0.73	-1.5
4,875,100	-		GFF4885	0.75	-1.8
4,875,100	-		GFF4885	0.75	-1.9
4,875,105	-		GFF4885	0.76	-1.7
4,875,110	+		GFF4885	0.77	-0.4
4,875,110	+		GFF4885	0.77	-0.2
4,875,118	-		GFF4885	0.78	-1.8
4,875,118	-		GFF4885	0.78	-0.3
4,875,118	-		GFF4885	0.78	+0.5
4,875,118	-		GFF4885	0.78	-0.8
4,875,135	+		GFF4885	0.81	+1.1
4,875,135	+		GFF4885	0.81	-0.7
4,875,137	+		GFF4885	0.81	+1.2
4,875,140	+		GFF4885	0.82	-0.4
4,875,143	-		GFF4885	0.83	-0.5
4,875,145	-		GFF4885	0.83	-1.5
4,875,148	-		GFF4885	0.83	-1.8
4,875,157	-		GFF4885	0.85	+0.7
4,875,162	-		GFF4885	0.86	-0.3
4,875,180	+		GFF4885	0.89	-0.8
4,875,228	-				-0.8
4,875,228	-				-0.6
4,875,230	-				+0.2
4,875,232	+				-0.5
4,875,237	+				-0.8
4,875,246	+				-0.4
4,875,246	+				-0.5
4,875,252	+				+0.7
4,875,254	-				+0.4
4,875,260	-				+1.2
4,875,264	-				+0.4
4,875,268	+				-0.7
4,875,268	+				-1.8
4,875,268	+				-0.6
4,875,268	+				-0.6
4,875,273	+				-2.3
4,875,276	-				+1.3
4,875,282	+				+0.6
4,875,282	+				-0.7
4,875,282	+				+0.5
4,875,284	+				-2.7
4,875,290	-				-0.3
4,875,292	+				+1.6
4,875,292	+				+0.3
4,875,292	+				-0.4
4,875,292	+				-2.1
4,875,292	+				-1.8
4,875,292	+				-0.5
4,875,298	-				+1.1
4,875,300	-				+0.3
4,875,300	-				-0.5
4,875,300	-				-2.0
4,875,300	-				-0.2
4,875,300	-				+1.1
4,875,308	+				-0.3
4,875,313	+				-0.3
4,875,313	+				-0.6
4,875,321	-				-1.1
4,875,325	-				-0.0
4,875,342	+				+0.5
4,875,342	+				+1.0
4,875,342	+				-0.5
4,875,345	-				-0.2
4,875,347	+				-1.5
4,875,354	+				+0.2
4,875,355	-				+0.3
4,875,355	-				-1.0
4,875,355	-				-1.4
4,875,355	-				+1.2
4,875,382	-				-1.5
4,875,405	+				+0.6
4,875,412	+				-1.7
4,875,412	+				-0.4
4,875,412	+				+0.3
4,875,412	+				-0.6
4,875,420	-		GFF4886	0.10	-0.3
4,875,420	-		GFF4886	0.10	-1.0
4,875,420	-		GFF4886	0.10	+0.4
4,875,440	+		GFF4886	0.11	-0.8
4,875,450	+		GFF4886	0.12	-0.1
4,875,457	+		GFF4886	0.13	-0.9
4,875,458	-		GFF4886	0.13	-0.3
4,875,458	-		GFF4886	0.13	-1.1
4,875,465	-		GFF4886	0.13	+0.1