Strain Fitness in Sphingobium sp. HT1-2 around GFF4879

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,865,856	+		GFF4878	0.40	-0.8
4,865,871	-		GFF4878	0.40	+0.7
4,865,882	-		GFF4878	0.41	+0.9
4,865,905	-		GFF4878	0.43	-1.6
4,865,912	+		GFF4878	0.43	+0.9
4,865,912	+		GFF4878	0.43	+0.2
4,865,920	-		GFF4878	0.44	-0.5
4,865,929	+		GFF4878	0.44	-0.4
4,865,929	+		GFF4878	0.44	-0.6
4,865,930	+		GFF4878	0.44	-0.1
4,865,931	+		GFF4878	0.44	-1.7
4,865,931	+		GFF4878	0.44	-0.0
4,865,931	+		GFF4878	0.44	+1.3
4,865,937	+		GFF4878	0.45	-0.2
4,865,937	-		GFF4878	0.45	-0.0
4,865,937	-		GFF4878	0.45	-0.3
4,865,939	-		GFF4878	0.45	+0.2
4,865,939	-		GFF4878	0.45	+0.0
4,865,939	-		GFF4878	0.45	+0.5
4,865,939	-		GFF4878	0.45	-0.4
4,865,939	-		GFF4878	0.45	-0.8
4,865,966	+		GFF4878	0.46	+0.0
4,865,971	+		GFF4878	0.47	-1.6
4,865,971	+		GFF4878	0.47	-0.9
4,865,974	-		GFF4878	0.47	-0.5
4,865,979	-		GFF4878	0.47	-0.1
4,865,989	-		GFF4878	0.48	-0.4
4,865,989	-		GFF4878	0.48	+1.1
4,865,989	-		GFF4878	0.48	-0.4
4,865,989	-		GFF4878	0.48	+1.0
4,866,013	+		GFF4878	0.49	-0.8
4,866,066	-		GFF4878	0.53	-1.0
4,866,082	+		GFF4878	0.54	+0.4
4,866,086	-		GFF4878	0.54	-0.7
4,866,090	-		GFF4878	0.54	-1.1
4,866,102	+		GFF4878	0.55	-0.5
4,866,102	+		GFF4878	0.55	+0.2
4,866,108	-		GFF4878	0.55	-0.3
4,866,110	-		GFF4878	0.55	+0.6
4,866,112	-		GFF4878	0.55	+0.9
4,866,129	-		GFF4878	0.56	-1.2
4,866,131	+		GFF4878	0.57	-0.9
4,866,138	+		GFF4878	0.57	-0.3
4,866,139	-		GFF4878	0.57	+1.0
4,866,139	-		GFF4878	0.57	+0.2
4,866,139	-		GFF4878	0.57	+0.8
4,866,139	-		GFF4878	0.57	+1.1
4,866,139	-		GFF4878	0.57	-1.5
4,866,144	-		GFF4878	0.57	+0.1
4,866,144	-		GFF4878	0.57	+0.5
4,866,168	+		GFF4878	0.59	-0.9
4,866,173	+		GFF4878	0.59	+0.7
4,866,173	+		GFF4878	0.59	+0.2
4,866,173	+		GFF4878	0.59	-0.1
4,866,173	+		GFF4878	0.59	+0.4
4,866,173	+		GFF4878	0.59	-0.8
4,866,179	+		GFF4878	0.60	-1.7
4,866,198	+		GFF4878	0.61	+0.2
4,866,198	+		GFF4878	0.61	+0.6
4,866,198	+		GFF4878	0.61	-0.0
4,866,201	-		GFF4878	0.61	+0.2
4,866,206	-		GFF4878	0.61	-0.2
4,866,238	-		GFF4878	0.63	-1.0
4,866,241	-		GFF4878	0.63	+0.0
4,866,243	+		GFF4878	0.64	-1.3
4,866,247	+		GFF4878	0.64	-0.6
4,866,247	+		GFF4878	0.64	-0.7
4,866,247	+		GFF4878	0.64	-0.8
4,866,250	+		GFF4878	0.64	-1.8
4,866,253	+		GFF4878	0.64	-0.6
4,866,255	-		GFF4878	0.64	-0.7
4,866,255	-		GFF4878	0.64	+0.3
4,866,266	+		GFF4878	0.65	+1.0
4,866,270	+		GFF4878	0.65	-0.3
4,866,283	-		GFF4878	0.66	+0.5
4,866,288	-		GFF4878	0.66	+0.3
4,866,290	-		GFF4878	0.66	+0.4
4,866,299	+		GFF4878	0.67	-1.2
4,866,299	+		GFF4878	0.67	-1.4
4,866,304	+		GFF4878	0.67	-0.0
4,866,304	+		GFF4878	0.67	+0.0
4,866,304	+		GFF4878	0.67	-0.5
4,866,304	+		GFF4878	0.67	-1.6
4,866,307	-		GFF4878	0.68	-1.4
4,866,307	-		GFF4878	0.68	-0.2
4,866,312	-		GFF4878	0.68	-2.7
4,866,312	-		GFF4878	0.68	+0.4
4,866,312	-		GFF4878	0.68	-0.5
4,866,312	-		GFF4878	0.68	+1.0
4,866,312	-		GFF4878	0.68	-1.3
4,866,312	-		GFF4878	0.68	-2.3
4,866,330	+		GFF4878	0.69	+0.3
4,866,361	-		GFF4878	0.71	+0.9
4,866,368	-		GFF4878	0.71	-1.0
4,866,386	+		GFF4878	0.72	+0.1
4,866,386	+		GFF4878	0.72	-1.9
4,866,402	+		GFF4878	0.73	+1.0
4,866,402	+		GFF4878	0.73	-1.2
4,866,402	+		GFF4878	0.73	-0.3
4,866,405	-		GFF4878	0.74	-0.5
4,866,405	-		GFF4878	0.74	-1.1
4,866,408	-		GFF4878	0.74	+0.2
4,866,410	-		GFF4878	0.74	+0.3
4,866,410	-		GFF4878	0.74	+0.2
4,866,410	-		GFF4878	0.74	+0.4
4,866,410	-		GFF4878	0.74	-0.7
4,866,426	+		GFF4878	0.75	-0.2
4,866,434	-		GFF4878	0.75	-2.1
4,866,434	-		GFF4878	0.75	-1.7
4,866,434	-		GFF4878	0.75	-0.8
4,866,459	+		GFF4878	0.77	-0.5
4,866,459	+		GFF4878	0.77	+0.5
4,866,459	+		GFF4878	0.77	-0.1
4,866,467	-		GFF4878	0.77	+1.5
4,866,467	-		GFF4878	0.77	-0.8
4,866,469	+		GFF4878	0.78	+0.3
4,866,474	+		GFF4878	0.78	+0.4
4,866,474	+		GFF4878	0.78	-0.6
4,866,477	-		GFF4878	0.78	+0.1
4,866,480	+		GFF4878	0.78	+0.1
4,866,508	+		GFF4878	0.80	-0.9
4,866,508	-		GFF4878	0.80	-1.4
4,866,514	+		GFF4878	0.80	-1.1
4,866,558	+		GFF4878	0.83	-1.1
4,866,558	+		GFF4878	0.83	-0.2
4,866,600	-		GFF4878	0.86	+0.3
4,866,605	-		GFF4878	0.86	-1.5
4,866,605	-		GFF4878	0.86	-0.9
4,866,616	+		GFF4878	0.87	+2.3
4,866,633	+		GFF4878	0.88	+0.3
4,866,657	-		GFF4878	0.89	-1.0
4,866,681	+				-0.2
4,866,690	+				+0.2
4,866,711	+				+0.1
4,866,714	-				-1.5
4,866,715	-				-0.7
4,866,724	+				-0.8
4,866,771	+				-0.6
4,866,771	+				-0.6
4,866,779	-				-0.1
4,866,807	+				-2.0
4,866,812	+				-0.7
4,866,812	+				-0.1
4,866,821	-				-1.3
4,866,833	-				-0.0
4,866,836	+				-1.8
4,866,846	+				-0.6
4,866,846	+				-0.6
4,866,854	-				-0.4
4,866,854	-				-1.3
4,866,867	+				+0.5
4,866,872	+				+0.2
4,866,872	+				-0.9
4,866,872	+				-0.5
4,866,872	+				+1.0
4,866,872	+				+0.3
4,866,873	-				+0.8
4,866,875	-				+0.1
4,866,875	-				+0.8
4,866,875	-				-1.5
4,866,875	-				-0.2
4,866,880	-				+1.1
4,866,880	-				+0.0
4,866,882	+				-2.7
4,866,882	+				-0.2
4,866,882	+				-0.9
4,866,882	+				-1.6
4,866,890	-				+0.5
4,866,890	-				-1.7
4,866,890	-				-1.8
4,866,890	-				-0.5
4,866,900	+				+0.7
4,866,900	+				-1.6
4,866,900	+				-1.4
4,866,900	+				-1.9
4,866,900	+				+0.1
4,866,900	+				+0.4
4,866,900	+				-1.7
4,866,900	+				-1.6
4,866,900	+				+1.4
4,866,900	+				-0.6
4,866,908	-				-0.6
4,866,908	-				+0.1
4,866,908	-				+0.4
4,866,915	-				+0.1
4,866,919	-				-0.2
4,866,924	-				+0.2
4,866,926	+				+1.0
4,866,926	+				-0.1
4,866,926	+				-0.7
4,866,926	+				-2.1
4,866,926	+				-1.9
4,866,926	+				-1.0
4,866,926	+				-0.2
4,866,926	+				-0.6
4,866,934	-				+0.5
4,866,945	+				-0.6
4,866,956	+				+1.1
4,866,965	-				-1.0
4,866,984	+				-0.4
4,866,984	+				-2.1
4,867,009	-		GFF4879	0.11	-0.8
4,867,009	-		GFF4879	0.11	-0.9
4,867,009	-		GFF4879	0.11	+0.7
4,867,016	-		GFF4879	0.11	-1.3
4,867,028	+		GFF4879	0.12	+1.0
4,867,029	+		GFF4879	0.12	-0.5
4,867,055	+		GFF4879	0.14	-0.6
4,867,101	+		GFF4879	0.17	+0.7
4,867,106	+		GFF4879	0.17	+0.2
4,867,106	+		GFF4879	0.17	-2.0
4,867,106	+		GFF4879	0.17	-1.1
4,867,106	+		GFF4879	0.17	+0.8
4,867,106	+		GFF4879	0.17	-0.8
4,867,114	-		GFF4879	0.17	-0.2
4,867,114	-		GFF4879	0.17	+0.4
4,867,114	-		GFF4879	0.17	+1.7
4,867,114	-		GFF4879	0.17	-0.7
4,867,114	-		GFF4879	0.17	-0.5
4,867,116	+		GFF4879	0.18	-0.8
4,867,124	-		GFF4879	0.18	-0.3
4,867,124	-		GFF4879	0.18	-0.6
4,867,129	-		GFF4879	0.18	-0.3
4,867,138	+		GFF4879	0.19	+1.3
4,867,158	-		GFF4879	0.20	+0.4
4,867,170	+		GFF4879	0.21	-0.4
4,867,170	+		GFF4879	0.21	-0.4
4,867,170	+		GFF4879	0.21	-0.8
4,867,175	+		GFF4879	0.21	-0.8
4,867,179	-		GFF4879	0.21	+0.2
4,867,190	+		GFF4879	0.22	-0.5
4,867,195	+		GFF4879	0.22	-0.9
4,867,197	-		GFF4879	0.23	+0.4
4,867,208	+		GFF4879	0.23	-0.5
4,867,208	+		GFF4879	0.23	+0.7
4,867,216	-		GFF4879	0.24	-1.4
4,867,216	-		GFF4879	0.24	+0.1
4,867,217	+		GFF4879	0.24	-2.0
4,867,217	+		GFF4879	0.24	-0.7
4,867,225	-		GFF4879	0.24	-2.1
4,867,225	-		GFF4879	0.24	-0.0
4,867,225	-		GFF4879	0.24	-1.6
4,867,228	+		GFF4879	0.24	-0.7
4,867,234	-		GFF4879	0.25	+0.8
4,867,245	-		GFF4879	0.26	+1.4
4,867,255	-		GFF4879	0.26	+0.0
4,867,265	-		GFF4879	0.27	-0.2
4,867,275	+		GFF4879	0.27	-0.6
4,867,275	+		GFF4879	0.27	-0.7
4,867,303	+		GFF4879	0.29	+1.0
4,867,309	+		GFF4879	0.29	-0.9
4,867,311	-		GFF4879	0.30	+0.8
4,867,312	-		GFF4879	0.30	+0.7
4,867,312	-		GFF4879	0.30	-0.1
4,867,313	+		GFF4879	0.30	+0.0
4,867,316	-		GFF4879	0.30	-0.4
4,867,316	-		GFF4879	0.30	-1.7
4,867,316	-		GFF4879	0.30	-3.0
4,867,333	-		GFF4879	0.31	-0.9
4,867,335	-		GFF4879	0.31	-1.3
4,867,371	-		GFF4879	0.33	-2.0
4,867,387	-		GFF4879	0.34	-1.1
4,867,389	+		GFF4879	0.34	+0.8
4,867,389	+		GFF4879	0.34	+0.2
4,867,417	-		GFF4879	0.36	-1.7
4,867,422	-		GFF4879	0.36	-0.0
4,867,422	-		GFF4879	0.36	+1.4
4,867,424	+		GFF4879	0.37	-0.1
4,867,424	+		GFF4879	0.37	-0.2
4,867,424	+		GFF4879	0.37	-1.2
4,867,429	+		GFF4879	0.37	-0.5
4,867,430	+		GFF4879	0.37	+0.3
4,867,432	-		GFF4879	0.37	-1.3
4,867,432	-		GFF4879	0.37	-1.5
4,867,432	-		GFF4879	0.37	-0.5
4,867,432	-		GFF4879	0.37	-2.6
4,867,432	-		GFF4879	0.37	+1.0
4,867,436	+		GFF4879	0.37	-1.4
4,867,436	+		GFF4879	0.37	-0.3
4,867,437	-		GFF4879	0.37	+1.0
4,867,437	-		GFF4879	0.37	-0.3
4,867,437	-		GFF4879	0.37	-0.5
4,867,437	-		GFF4879	0.37	-0.6
4,867,441	+		GFF4879	0.38	+0.2
4,867,445	-		GFF4879	0.38	+0.0
4,867,446	+		GFF4879	0.38	+0.3
4,867,446	+		GFF4879	0.38	-1.7
4,867,451	+		GFF4879	0.38	-0.6
4,867,451	+		GFF4879	0.38	-0.6
4,867,454	-		GFF4879	0.38	+0.2
4,867,454	-		GFF4879	0.38	+1.9
4,867,454	-		GFF4879	0.38	+0.4
4,867,454	-		GFF4879	0.38	-1.7
4,867,493	+		GFF4879	0.41	+0.7
4,867,576	+		GFF4879	0.46	-0.7
4,867,576	+		GFF4879	0.46	-0.8
4,867,579	-		GFF4879	0.46	-2.1
4,867,584	+		GFF4879	0.47	+0.4
4,867,584	-		GFF4879	0.47	+0.0
4,867,589	+		GFF4879	0.47	-2.0
4,867,589	+		GFF4879	0.47	+0.5
4,867,592	-		GFF4879	0.47	-0.7
4,867,592	-		GFF4879	0.47	+0.4
4,867,597	-		GFF4879	0.47	-0.1
4,867,597	-		GFF4879	0.47	-1.2
4,867,630	+		GFF4879	0.49	-0.1
4,867,653	+		GFF4879	0.51	-0.5
4,867,659	+		GFF4879	0.51	+0.2
4,867,659	+		GFF4879	0.51	-0.2
4,867,680	+		GFF4879	0.52	-2.8
4,867,680	-		GFF4879	0.52	+1.1
4,867,680	-		GFF4879	0.52	+1.7
4,867,685	-		GFF4879	0.53	+0.1
4,867,685	-		GFF4879	0.53	-0.3
4,867,697	+		GFF4879	0.53	+0.8
4,867,697	+		GFF4879	0.53	-0.8
4,867,697	+		GFF4879	0.53	+1.0
4,867,697	+		GFF4879	0.53	-1.9
4,867,705	-		GFF4879	0.54	-2.3
4,867,705	-		GFF4879	0.54	+0.8
4,867,705	-		GFF4879	0.54	-0.8
4,867,705	-		GFF4879	0.54	-1.6
4,867,740	-		GFF4879	0.56	-0.2
4,867,756	+		GFF4879	0.57	-0.3
4,867,772	-		GFF4879	0.58	-1.2
4,867,772	-		GFF4879	0.58	-1.5
4,867,781	-		GFF4879	0.59	-1.5
4,867,790	+		GFF4879	0.59	-0.5
4,867,798	+		GFF4879	0.60	+1.7
4,867,798	+		GFF4879	0.60	+1.8
4,867,798	-		GFF4879	0.60	-1.5
4,867,823	-		GFF4879	0.61	-0.6
4,867,830	+		GFF4879	0.62	-0.4
4,867,830	+		GFF4879	0.62	-0.0
4,867,830	+		GFF4879	0.62	+0.5
4,867,831	+		GFF4879	0.62	-0.5
4,867,836	+		GFF4879	0.62	-1.0
4,867,836	+		GFF4879	0.62	-0.2
4,867,838	+		GFF4879	0.62	+0.7
4,867,838	+		GFF4879	0.62	-0.2
4,867,838	+		GFF4879	0.62	-0.6
4,867,838	-		GFF4879	0.62	-2.3
4,867,838	-		GFF4879	0.62	+0.3
4,867,844	-		GFF4879	0.63	-0.6
4,867,844	-		GFF4879	0.63	-0.5
4,867,846	+		GFF4879	0.63	+0.5
4,867,846	-		GFF4879	0.63	-0.6
4,867,862	+		GFF4879	0.64	-0.1
4,867,870	-		GFF4879	0.64	-1.6
4,867,886	-		GFF4879	0.65	-0.0
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4,868,308	+				+0.9
4,868,308	+				+0.2
4,868,320	+				-1.0
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4,868,334	+				-0.9
4,868,334	+				+0.8
4,868,342	-				-0.8
4,868,342	-				-1.4
4,868,342	-				-1.6
4,868,342	-				-1.1
4,868,348	-				+1.3
4,868,363	+				-1.5
4,868,370	+				+0.3
4,868,371	-				+0.8
4,868,408	+				-1.3
4,868,416	-				+1.2
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4,868,429	+				-0.2
4,868,429	+				+0.7
4,868,429	+				-2.3
4,868,429	+				+1.0
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4,868,430	+				+0.7
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4,868,437	-				-0.1
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4,868,444	-				-0.4
4,868,451	-				-0.5
4,868,456	+				-1.2
4,868,456	+				-2.0
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4,868,456	+				-1.2
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4,868,459	-				+0.4
4,868,464	-				-0.7
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4,868,464	-				+0.5
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4,868,474	-				+1.8
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4,868,510	-				+0.4
4,868,511	+				-2.6
4,868,511	+				-0.8
4,868,511	+				-0.3
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4,868,519	-				-0.7
4,868,519	-				+0.1
4,868,519	-				-3.0
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4,868,521	+				+0.2
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4,868,529	-				-0.6
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4,868,535	+				-0.7
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4,868,547	+				-0.1
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4,868,547	+				+1.7
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4,868,555	-				-0.8
4,868,555	-				+0.1
4,868,555	-				-1.5
4,868,555	-				-1.6
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4,868,555	-				-2.1
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4,868,588	+				+0.5
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4,868,616	+				+0.6
4,868,616	+				+1.4
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4,868,689	-				-0.1
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4,868,749	+				+0.2
4,868,751	+				+1.6
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4,868,759	+				+0.4
4,868,761	+				-0.5
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4,868,778	-				+0.5
4,868,781	+				-0.3
4,868,781	+				+0.7
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4,868,803	+				-1.7
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