Strain Fitness in Sphingobium sp. HT1-2 around GFF4872

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,857,137	+		GFF4870	0.44	-0.3
4,857,154	-		GFF4870	0.46	+0.1
4,857,156	+		GFF4870	0.46	-1.7
4,857,159	-		GFF4870	0.46	-1.2
4,857,164	-		GFF4870	0.47	-1.4
4,857,171	+		GFF4870	0.47	+1.0
4,857,200	-		GFF4870	0.50	-0.6
4,857,200	-		GFF4870	0.50	+0.2
4,857,201	+		GFF4870	0.51	-2.3
4,857,206	+		GFF4870	0.51	+0.2
4,857,206	+		GFF4870	0.51	+1.0
4,857,206	+		GFF4870	0.51	-1.0
4,857,214	-		GFF4870	0.52	-1.6
4,857,214	-		GFF4870	0.52	-0.1
4,857,214	-		GFF4870	0.52	-0.5
4,857,214	-		GFF4870	0.52	+0.7
4,857,214	-		GFF4870	0.52	+1.6
4,857,216	+		GFF4870	0.52	+1.4
4,857,216	+		GFF4870	0.52	-0.3
4,857,216	+		GFF4870	0.52	-0.8
4,857,216	+		GFF4870	0.52	-0.1
4,857,216	+		GFF4870	0.52	+0.2
4,857,216	+		GFF4870	0.52	-1.7
4,857,216	+		GFF4870	0.52	+0.2
4,857,216	+		GFF4870	0.52	+0.2
4,857,224	-		GFF4870	0.53	+1.0
4,857,224	-		GFF4870	0.53	-2.3
4,857,224	-		GFF4870	0.53	-0.3
4,857,224	-		GFF4870	0.53	+0.7
4,857,229	-		GFF4870	0.53	-1.4
4,857,238	-		GFF4870	0.54	-2.7
4,857,238	-		GFF4870	0.54	+0.7
4,857,241	+		GFF4870	0.55	-0.5
4,857,246	+		GFF4870	0.55	+0.1
4,857,249	-		GFF4870	0.55	-0.0
4,857,250	-		GFF4870	0.55	-1.0
4,857,254	-		GFF4870	0.56	-2.4
4,857,255	-		GFF4870	0.56	+0.6
4,857,263	+		GFF4870	0.57	-1.6
4,857,271	-		GFF4870	0.58	-0.9
4,857,271	-		GFF4870	0.58	-0.2
4,857,273	+		GFF4870	0.58	-0.3
4,857,279	-		GFF4870	0.58	-2.5
4,857,279	-		GFF4870	0.58	-1.7
4,857,279	-		GFF4870	0.58	-1.1
4,857,279	-		GFF4870	0.58	-0.4
4,857,279	-		GFF4870	0.58	+0.3
4,857,279	-		GFF4870	0.58	-2.5
4,857,290	+		GFF4870	0.60	-1.5
4,857,302	-		GFF4870	0.61	-1.5
4,857,304	+		GFF4870	0.61	+0.4
4,857,304	+		GFF4870	0.61	+0.2
4,857,307	-		GFF4870	0.61	+0.1
4,857,309	+		GFF4870	0.61	+0.3
4,857,312	-		GFF4870	0.62	+0.3
4,857,321	+		GFF4870	0.63	-0.1
4,857,329	-		GFF4870	0.64	+0.7
4,857,329	-		GFF4870	0.64	+0.7
4,857,356	-		GFF4870	0.66	-0.7
4,857,358	+		GFF4870	0.66	-0.1
4,857,366	-		GFF4870	0.67	-0.5
4,857,366	-		GFF4870	0.67	-0.4
4,857,366	-		GFF4870	0.67	+0.4
4,857,366	-		GFF4870	0.67	-0.5
4,857,366	-		GFF4870	0.67	-0.7
4,857,368	-		GFF4870	0.67	+0.5
4,857,382	+		GFF4870	0.69	-0.3
4,857,387	+		GFF4870	0.69	-0.7
4,857,387	+		GFF4870	0.69	+0.9
4,857,387	+		GFF4870	0.69	-0.8
4,857,387	+		GFF4870	0.69	-0.3
4,857,390	-		GFF4870	0.70	-0.8
4,857,395	-		GFF4870	0.70	-0.0
4,857,395	-		GFF4870	0.70	-0.5
4,857,395	-		GFF4870	0.70	-0.6
4,857,395	-		GFF4870	0.70	-0.6
4,857,395	-		GFF4870	0.70	+0.7
4,857,395	-		GFF4870	0.70	-0.8
4,857,395	-		GFF4870	0.70	+0.3
4,857,406	-		GFF4870	0.71	-0.6
4,857,407	+		GFF4870	0.71	-0.2
4,857,512	+		GFF4870	0.82	+0.5
4,857,512	+		GFF4870	0.82	-0.6
4,857,520	-		GFF4870	0.83	+1.2
4,857,522	+		GFF4870	0.83	+0.3
4,857,529	+		GFF4870	0.84	+0.5
4,857,530	-		GFF4870	0.84	+0.7
4,857,530	-		GFF4870	0.84	-1.4
4,857,533	+		GFF4870	0.84	-0.8
4,857,533	+		GFF4870	0.84	+0.2
4,857,541	-		GFF4870	0.85	-0.2
4,857,541	-		GFF4870	0.85	-0.6
4,857,541	-		GFF4870	0.85	-0.0
4,857,541	-		GFF4870	0.85	+0.3
4,857,546	-		GFF4870	0.86	+0.6
4,857,555	-		GFF4870	0.86	-2.0
4,857,562	-		GFF4870	0.87	-1.6
4,857,564	+		GFF4870	0.87	+0.4
4,857,564	+		GFF4870	0.87	-0.6
4,857,564	+		GFF4870	0.87	-2.9
4,857,564	+		GFF4870	0.87	+0.1
4,857,564	+		GFF4870	0.87	-0.4
4,857,564	+		GFF4870	0.87	+0.1
4,857,564	+		GFF4870	0.87	+1.1
4,857,564	+		GFF4870	0.87	+0.1
4,857,564	+		GFF4870	0.87	+0.5
4,857,564	+		GFF4870	0.87	-1.2
4,857,564	+		GFF4870	0.87	-2.5
4,857,564	+		GFF4870	0.87	+0.6
4,857,567	-		GFF4870	0.88	+0.0
4,857,569	+		GFF4870	0.88	-1.8
4,857,569	+		GFF4870	0.88	-0.8
4,857,572	-		GFF4870	0.88	+0.2
4,857,572	-		GFF4870	0.88	+0.5
4,857,572	-		GFF4870	0.88	+0.1
4,857,572	-		GFF4870	0.88	+0.4
4,857,572	-		GFF4870	0.88	-0.3
4,857,572	-		GFF4870	0.88	+0.8
4,857,572	-		GFF4870	0.88	+0.2
4,857,572	-		GFF4870	0.88	-2.4
4,857,572	-		GFF4870	0.88	-0.4
4,857,572	-		GFF4870	0.88	-1.8
4,857,572	-		GFF4870	0.88	-0.8
4,857,573	+		GFF4870	0.88	+0.1
4,857,586	-		GFF4870	0.90	-1.2
4,857,594	-				-1.0
4,857,651	+				-0.6
4,857,659	-				-0.3
4,857,659	-				-0.6
4,857,659	-				+0.5
4,857,659	-				-0.5
4,857,659	-				-1.4
4,857,659	-				-0.8
4,857,661	+				+0.6
4,857,661	+				+1.7
4,857,661	+				-0.6
4,857,661	+				-0.4
4,857,661	+				-0.7
4,857,661	+				+0.3
4,857,661	+				+0.6
4,857,661	+				-0.6
4,857,661	+				+1.1
4,857,661	+				-0.1
4,857,666	+				+0.3
4,857,666	+				-1.0
4,857,666	+				-0.5
4,857,666	+				-0.1
4,857,666	+				+0.8
4,857,666	+				-0.0
4,857,667	-				-0.5
4,857,667	-				-0.8
4,857,668	+				-0.6
4,857,668	+				+0.1
4,857,668	+				-2.3
4,857,668	+				+1.0
4,857,668	+				+1.1
4,857,669	-				+0.6
4,857,669	-				-1.7
4,857,669	-				-0.5
4,857,669	-				-0.3
4,857,669	-				+0.2
4,857,669	-				-0.8
4,857,669	-				-0.4
4,857,669	-				+0.2
4,857,669	-				+0.4
4,857,673	+				+0.2
4,857,673	+				-1.0
4,857,673	+				-0.8
4,857,673	+				-0.3
4,857,673	+				-1.1
4,857,674	-				-1.6
4,857,674	-				+0.6
4,857,674	-				+0.4
4,857,674	-				+0.6
4,857,676	-				-0.7
4,857,676	-				+0.4
4,857,676	-				-1.3
4,857,676	-				+0.2
4,857,676	-				-0.0
4,857,680	+				-0.0
4,857,681	-				-2.4
4,857,681	-				+0.9
4,857,682	+				+1.2
4,857,682	+				-2.2
4,857,682	+				-0.9
4,857,682	+				-0.0
4,857,682	+				-1.5
4,857,682	+				-0.2
4,857,690	-				-0.4
4,857,690	-				+0.9
4,857,690	-				-1.0
4,857,690	-				-0.7
4,857,690	-				-1.3
4,857,690	-				-0.3
4,857,690	-				-0.2
4,857,690	-				+1.0
4,857,690	-				-0.4
4,857,690	-				-1.0
4,857,690	-				-0.2
4,857,692	+				+1.1
4,857,692	+				+0.3
4,857,692	+				+0.5
4,857,697	+				+0.6
4,857,700	-				-1.5
4,857,700	-				-0.4
4,857,716	+				-1.8
4,857,716	+				+0.6
4,857,724	+				-1.7
4,857,724	+				-0.2
4,857,724	-				+0.3
4,857,724	-				-1.3
4,857,724	-				-0.3
4,857,724	-				+0.1
4,857,724	-				-1.2
4,857,724	-				-1.5
4,857,724	-				-0.4
4,857,724	-				-0.3
4,857,724	-				+0.6
4,857,731	-		GFF4871	0.11	-0.0
4,857,738	+		GFF4871	0.13	+1.3
4,857,743	+		GFF4871	0.14	+0.2
4,857,746	-		GFF4871	0.15	-1.6
4,857,751	-		GFF4871	0.16	-0.2
4,857,767	+		GFF4871	0.20	+0.9
4,857,771	+		GFF4871	0.21	+0.3
4,857,773	+		GFF4871	0.21	+0.2
4,857,781	+		GFF4871	0.23	-0.7
4,857,781	-		GFF4871	0.23	+0.2
4,857,789	-		GFF4871	0.25	-0.3
4,857,797	+		GFF4871	0.27	-0.4
4,857,797	+		GFF4871	0.27	-1.5
4,857,819	+		GFF4871	0.32	+0.2
4,857,863	-		GFF4871	0.43	-2.3
4,857,883	+		GFF4871	0.48	-2.0
4,857,883	+		GFF4871	0.48	+0.3
4,857,883	+		GFF4871	0.48	-1.5
4,857,883	+		GFF4871	0.48	+0.1
4,857,883	+		GFF4871	0.48	-0.1
4,857,891	-		GFF4871	0.50	-1.0
4,857,891	-		GFF4871	0.50	+0.5
4,857,891	-		GFF4871	0.50	-0.4
4,857,891	-		GFF4871	0.50	-2.3
4,857,891	-		GFF4871	0.50	+0.6
4,857,891	-		GFF4871	0.50	-0.5
4,857,891	-		GFF4871	0.50	+0.6
4,857,914	+		GFF4871	0.55	+0.2
4,857,914	+		GFF4871	0.55	-1.3
4,857,922	-		GFF4871	0.57	+0.8
4,857,941	+		GFF4871	0.62	-0.7
4,857,958	+		GFF4871	0.66	-0.4
4,857,958	+		GFF4871	0.66	-2.9
4,857,966	-		GFF4871	0.68	+0.7
4,857,966	-		GFF4871	0.68	-1.0
4,857,966	-		GFF4871	0.68	+1.0
4,857,968	+		GFF4871	0.68	+0.5
4,857,968	+		GFF4871	0.68	-2.8
4,857,968	+		GFF4871	0.68	-0.6
4,857,968	+		GFF4871	0.68	-0.2
4,857,968	+		GFF4871	0.68	-1.1
4,857,976	-		GFF4871	0.70	+0.1
4,857,976	-		GFF4871	0.70	-0.3
4,857,976	-		GFF4871	0.70	+1.1
4,858,010	+		GFF4871	0.78	+0.7
4,858,016	-		GFF4871	0.80	+0.3
4,858,045	-		GFF4871	0.87	-0.4
4,858,045	-		GFF4871	0.87	-3.0
4,858,049	+		GFF4871	0.88	-0.9
4,858,049	+		GFF4871	0.88	-0.9
4,858,049	+		GFF4871	0.88	-3.4
4,858,079	+				+1.1
4,858,087	-				-0.5
4,858,087	-				-0.5
4,858,100	-				-1.7
4,858,100	-				+0.8
4,858,102	+				-0.0
4,858,102	+				-0.8
4,858,102	+				-0.5
4,858,110	-				+0.9
4,858,133	-				+0.4
4,858,142	-				-0.8
4,858,154	-				+0.8
4,858,154	-				-2.5
4,858,260	-				-2.9
4,858,265	+				+0.7
4,858,265	+				+0.1
4,858,265	+				+0.6
4,858,265	+				+0.9
4,858,265	+				+0.7
4,858,265	+				-0.5
4,858,273	-				-0.5
4,858,273	-				-0.2
4,858,273	-				-0.2
4,858,273	-				-1.7
4,858,273	-				-1.0
4,858,273	-				-0.0
4,858,273	-				-1.9
4,858,273	-				-1.1
4,858,273	-				-0.7
4,858,273	-				-0.8
4,858,273	-				-0.4
4,858,273	-				-1.3
4,858,283	-		GFF4872	0.10	-2.4
4,858,292	+		GFF4872	0.11	-0.6
4,858,313	+		GFF4872	0.12	-0.4
4,858,313	+		GFF4872	0.12	-0.5
4,858,339	+		GFF4872	0.13	+0.5
4,858,345	+		GFF4872	0.14	-0.5
4,858,345	+		GFF4872	0.14	+0.9
4,858,345	+		GFF4872	0.14	-0.6
4,858,345	+		GFF4872	0.14	-0.1
4,858,345	+		GFF4872	0.14	-1.6
4,858,353	-		GFF4872	0.14	-1.8
4,858,353	-		GFF4872	0.14	+0.2
4,858,353	-		GFF4872	0.14	-2.0
4,858,353	-		GFF4872	0.14	-0.8
4,858,373	+		GFF4872	0.16	-0.6
4,858,373	+		GFF4872	0.16	+0.2
4,858,373	+		GFF4872	0.16	-0.9
4,858,378	+		GFF4872	0.16	-0.5
4,858,381	-		GFF4872	0.16	+0.6
4,858,386	-		GFF4872	0.16	+0.0
4,858,391	-		GFF4872	0.17	-0.2
4,858,393	+		GFF4872	0.17	-1.0
4,858,396	-		GFF4872	0.17	+0.5
4,858,402	-		GFF4872	0.17	+1.4
4,858,445	+		GFF4872	0.20	-1.7
4,858,447	+		GFF4872	0.20	-1.3
4,858,488	+		GFF4872	0.22	+1.2
4,858,488	+		GFF4872	0.22	-0.0
4,858,496	-		GFF4872	0.23	-0.4
4,858,496	-		GFF4872	0.23	-0.5
4,858,507	+		GFF4872	0.23	+0.2
4,858,543	-		GFF4872	0.26	-1.0
4,858,543	-		GFF4872	0.26	-0.3
4,858,570	-		GFF4872	0.27	-0.5
4,858,570	-		GFF4872	0.27	-1.2
4,858,571	+		GFF4872	0.27	-0.1
4,858,579	+		GFF4872	0.28	+0.2
4,858,579	-		GFF4872	0.28	+0.8
4,858,587	-		GFF4872	0.28	-0.7
4,858,587	-		GFF4872	0.28	-0.5
4,858,589	+		GFF4872	0.28	-0.6
4,858,596	+		GFF4872	0.29	+0.2
4,858,596	+		GFF4872	0.29	+0.0
4,858,597	-		GFF4872	0.29	+0.8
4,858,604	-		GFF4872	0.29	-1.1
4,858,604	-		GFF4872	0.29	-0.3
4,858,604	-		GFF4872	0.29	-0.3
4,858,616	+		GFF4872	0.30	-1.6
4,858,626	+		GFF4872	0.31	-0.8
4,858,626	+		GFF4872	0.31	+0.6
4,858,626	+		GFF4872	0.31	-0.3
4,858,626	+		GFF4872	0.31	+0.7
4,858,626	+		GFF4872	0.31	+0.0
4,858,626	+		GFF4872	0.31	-1.7
4,858,631	+		GFF4872	0.31	-0.1
4,858,631	+		GFF4872	0.31	-0.4
4,858,634	-		GFF4872	0.31	+0.4
4,858,634	-		GFF4872	0.31	-0.7
4,858,634	-		GFF4872	0.31	-0.4
4,858,634	-		GFF4872	0.31	+0.2
4,858,634	-		GFF4872	0.31	-1.2
4,858,634	-		GFF4872	0.31	-0.7
4,858,634	-		GFF4872	0.31	+1.7
4,858,639	-		GFF4872	0.31	-0.8
4,858,639	-		GFF4872	0.31	-2.5
4,858,639	-		GFF4872	0.31	-0.9
4,858,643	+		GFF4872	0.32	-0.3
4,858,651	+		GFF4872	0.32	-0.9
4,858,651	-		GFF4872	0.32	-0.2
4,858,659	-		GFF4872	0.33	-0.5
4,858,685	+		GFF4872	0.34	-0.1
4,858,694	+		GFF4872	0.35	-1.6
4,858,712	-		GFF4872	0.36	+1.3
4,858,719	+		GFF4872	0.36	-1.0
4,858,719	+		GFF4872	0.36	-1.5
4,858,719	+		GFF4872	0.36	+0.1
4,858,727	-		GFF4872	0.37	+0.1
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4,858,749	-		GFF4872	0.38	+1.2
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4,858,749	-		GFF4872	0.38	-1.1
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4,858,769	-		GFF4872	0.39	-0.0
4,858,773	+		GFF4872	0.39	-1.5
4,858,775	+		GFF4872	0.39	-0.8
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4,858,775	+		GFF4872	0.39	+0.5
4,858,775	+		GFF4872	0.39	-2.2
4,858,775	+		GFF4872	0.39	-0.3
4,858,775	+		GFF4872	0.39	-0.5
4,858,775	+		GFF4872	0.39	-0.7
4,858,775	+		GFF4872	0.39	-2.0
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4,858,783	-		GFF4872	0.40	-1.7
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4,858,783	-		GFF4872	0.40	+1.3
4,858,783	-		GFF4872	0.40	-1.8
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4,859,097	-		GFF4872	0.59	-1.6
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4,859,265	-		GFF4872	0.69	-1.0
4,859,265	-		GFF4872	0.69	-0.5
4,859,266	+		GFF4872	0.69	-0.1
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4,859,410	-		GFF4872	0.77	-2.7
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4,859,545	-		GFF4872	0.85	-2.7
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4,859,626	-				+0.2
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4,859,648	-				+0.8
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4,859,658	+				+1.2
4,859,658	+				-2.1
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4,859,666	-				-1.2
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4,859,666	-				+0.6
4,859,666	-				-1.6
4,859,666	-				+0.4
4,859,666	-				-0.9
4,859,666	-				+0.8
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4,859,676	-				-1.1
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4,859,689	-				-1.7
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4,859,699	-				-2.9
4,859,709	-				-3.3
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4,859,721	-				-2.4
4,859,721	-				-1.9
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4,859,767	+				+0.4
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4,859,777	-				-2.7
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4,859,792	-				-0.0
4,859,792	-				-2.2
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