Strain Fitness in Sphingobium sp. HT1-2 around GFF4848

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,830,024	+		GFF4846	0.45	+1.3
4,830,053	-		GFF4846	0.48	-1.1
4,830,079	+		GFF4846	0.51	+1.1
4,830,087	-		GFF4846	0.52	-0.9
4,830,100	+		GFF4846	0.53	-1.0
4,830,105	+		GFF4846	0.54	+0.3
4,830,105	+		GFF4846	0.54	-0.5
4,830,105	+		GFF4846	0.54	-0.4
4,830,105	+		GFF4846	0.54	+0.6
4,830,108	-		GFF4846	0.54	-0.4
4,830,113	-		GFF4846	0.55	-0.5
4,830,113	-		GFF4846	0.55	-1.6
4,830,113	-		GFF4846	0.55	-0.6
4,830,113	-		GFF4846	0.55	-0.6
4,830,115	-		GFF4846	0.55	+0.3
4,830,127	-		GFF4846	0.56	-2.5
4,830,128	+		GFF4846	0.56	-0.3
4,830,143	+		GFF4846	0.58	+0.2
4,830,153	-		GFF4846	0.59	-1.6
4,830,162	+		GFF4846	0.60	-0.8
4,830,162	+		GFF4846	0.60	-0.5
4,830,170	+		GFF4846	0.61	+0.9
4,830,170	-		GFF4846	0.61	+0.3
4,830,170	-		GFF4846	0.61	-1.0
4,830,178	+		GFF4846	0.62	+1.2
4,830,180	+		GFF4846	0.62	-0.6
4,830,180	+		GFF4846	0.62	+0.3
4,830,188	-		GFF4846	0.63	+1.0
4,830,203	-		GFF4846	0.64	-0.3
4,830,215	+		GFF4846	0.65	+0.9
4,830,219	+		GFF4846	0.66	+0.4
4,830,227	-		GFF4846	0.67	+0.2
4,830,235	-		GFF4846	0.68	+0.0
4,830,243	+		GFF4846	0.68	-1.6
4,830,251	-		GFF4846	0.69	-0.7
4,830,251	-		GFF4846	0.69	-0.1
4,830,276	+		GFF4846	0.72	+1.1
4,830,296	+		GFF4846	0.74	-0.2
4,830,304	-		GFF4846	0.75	-0.5
4,830,317	+		GFF4846	0.76	+1.2
4,830,325	-		GFF4846	0.77	-1.8
4,830,327	+		GFF4846	0.77	-0.9
4,830,330	-		GFF4846	0.78	-0.4
4,830,335	-		GFF4846	0.78	-0.0
4,830,335	-		GFF4846	0.78	-0.9
4,830,336	+		GFF4846	0.78	-1.9
4,830,367	-		GFF4846	0.82	+1.1
4,830,372	+		GFF4846	0.82	+0.6
4,830,374	-		GFF4846	0.82	-1.6
4,830,381	-		GFF4846	0.83	+0.0
4,830,393	+		GFF4846	0.85	-1.1
4,830,458	+				+1.7
4,830,458	+				+0.6
4,830,466	-				-1.2
4,830,498	+				-0.7
4,830,498	+				+0.1
4,830,517	+				+1.4
4,830,552	-				+0.1
4,830,589	+				-0.5
4,830,590	+				-1.5
4,830,590	+				-0.5
4,830,598	-				-1.1
4,830,633	-				+0.5
4,830,646	+		GFF4847	0.12	+1.0
4,830,648	+		GFF4847	0.12	-1.6
4,830,648	+		GFF4847	0.12	+0.7
4,830,648	+		GFF4847	0.12	+0.4
4,830,648	+		GFF4847	0.12	-0.4
4,830,656	+		GFF4847	0.14	+0.1
4,830,656	+		GFF4847	0.14	-0.3
4,830,656	-		GFF4847	0.14	-0.9
4,830,656	-		GFF4847	0.14	+0.4
4,830,656	-		GFF4847	0.14	+0.7
4,830,662	-		GFF4847	0.16	+0.4
4,830,664	-		GFF4847	0.17	+0.8
4,830,698	-		GFF4847	0.27	+0.4
4,830,706	-		GFF4847	0.29	+0.6
4,830,716	-		GFF4847	0.32	+0.4
4,830,737	-		GFF4847	0.38	-0.0
4,830,747	+		GFF4847	0.41	-0.6
4,830,770	-		GFF4847	0.48	+1.0
4,830,808	+		GFF4847	0.59	+0.7
4,830,808	+		GFF4847	0.59	-0.5
4,830,813	+		GFF4847	0.60	-0.6
4,830,813	+		GFF4847	0.60	-1.5
4,830,813	+		GFF4847	0.60	+0.7
4,830,813	+		GFF4847	0.60	+1.3
4,830,815	+		GFF4847	0.61	+1.0
4,830,821	-		GFF4847	0.62	-1.9
4,830,826	+		GFF4847	0.64	-0.8
4,830,826	+		GFF4847	0.64	+0.6
4,830,826	+		GFF4847	0.64	+1.3
4,830,834	-		GFF4847	0.66	-0.5
4,830,834	-		GFF4847	0.66	+0.2
4,830,835	-		GFF4847	0.66	-0.4
4,830,859	-		GFF4847	0.73	+0.6
4,830,874	+		GFF4847	0.78	-1.6
4,830,874	+		GFF4847	0.78	+0.4
4,830,886	+		GFF4847	0.81	+1.2
4,830,888	+		GFF4847	0.82	-1.0
4,830,908	-		GFF4847	0.88	+0.2
4,830,921	+				-0.3
4,830,924	-				+1.0
4,830,929	-				+0.2
4,830,945	+				-0.1
4,830,945	+				+0.8
4,830,945	+				+0.6
4,830,945	+				+0.4
4,830,953	-				-2.4
4,830,953	-				+1.0
4,830,953	-				-0.3
4,830,953	-				+0.5
4,830,953	-				+0.8
4,830,953	-				+0.1
4,830,953	-				+1.2
4,830,953	-				+1.0
4,830,953	-				+0.1
4,830,975	+				+0.6
4,830,981	+				-2.5
4,830,982	+				+0.4
4,830,983	-				-0.2
4,830,983	-				-1.0
4,830,983	-				+0.4
4,830,983	-				-0.5
4,830,999	+				+0.6
4,831,001	-				-0.5
4,831,007	-				-0.9
4,831,030	-				+0.5
4,831,046	+				+0.7
4,831,048	+				+0.1
4,831,063	-		GFF4848	0.14	+0.7
4,831,067	+		GFF4848	0.15	-0.1
4,831,068	+		GFF4848	0.16	-0.6
4,831,068	+		GFF4848	0.16	+0.7
4,831,068	+		GFF4848	0.16	+1.1
4,831,068	+		GFF4848	0.16	+0.7
4,831,068	+		GFF4848	0.16	+0.9
4,831,072	+		GFF4848	0.17	+0.8
4,831,076	-		GFF4848	0.18	-1.5
4,831,076	-		GFF4848	0.18	+0.6
4,831,076	-		GFF4848	0.18	-0.0
4,831,111	-		GFF4848	0.29	+0.4
4,831,121	+		GFF4848	0.32	-0.3
4,831,138	-		GFF4848	0.37	+2.0
4,831,155	+		GFF4848	0.42	-0.6
4,831,189	+		GFF4848	0.52	+0.8
4,831,194	+		GFF4848	0.53	+1.5
4,831,197	-		GFF4848	0.54	-1.7
4,831,197	-		GFF4848	0.54	+0.1
4,831,202	-		GFF4848	0.56	-1.6
4,831,202	-		GFF4848	0.56	-0.5
4,831,202	-		GFF4848	0.56	+2.0
4,831,203	+		GFF4848	0.56	-0.0
4,831,208	+		GFF4848	0.57	+0.8
4,831,213	+		GFF4848	0.59	+0.5
4,831,213	+		GFF4848	0.59	-0.7
4,831,216	-		GFF4848	0.60	+0.5
4,831,221	-		GFF4848	0.61	-0.4
4,831,221	-		GFF4848	0.61	+0.1
4,831,228	-		GFF4848	0.63	-0.5
4,831,262	-		GFF4848	0.74	-0.4
4,831,285	+		GFF4848	0.80	-0.3
4,831,312	+		GFF4848	0.88	-1.6
4,831,318	+				+1.0
4,831,328	-				-0.1
4,831,331	+				-0.6
4,831,331	+				+1.4
4,831,331	+				+0.5
4,831,331	+				-1.0
4,831,339	-				+1.0
4,831,339	-				-1.5
4,831,346	+				+0.0
4,831,346	+				+0.0
4,831,346	+				+0.9
4,831,354	-				-0.1
4,831,354	-				+0.2
4,831,354	-				+0.8
4,831,377	+				-1.5
4,831,377	+				-0.2
4,831,382	+				+0.8
4,831,382	+				-1.4
4,831,392	+				+1.1
4,831,397	+				-1.7
4,831,400	+				-2.2
4,831,400	+				+0.2
4,831,400	+				+0.4
4,831,400	+				-1.7
4,831,405	-				-0.5
4,831,408	-				+1.4
4,831,408	-				-1.2
4,831,419	-				+1.4
4,831,473	+				+0.0
4,831,473	+				+0.5
4,831,473	+				+1.5
4,831,473	+				-0.3
4,831,473	+				+0.6
4,831,473	+				-0.2
4,831,473	+				+1.3
4,831,473	-				+0.2
4,831,475	+				-0.1
4,831,479	+				-2.0
4,831,479	+				-0.3
4,831,481	-				-0.9
4,831,481	-				+0.2
4,831,486	+				-0.7
4,831,491	+				-1.1
4,831,491	+				+0.0
4,831,491	+				+0.3
4,831,491	+				+0.4
4,831,494	-				-0.2
4,831,496	+				-0.0
4,831,499	-				+0.5
4,831,499	-				-1.4
4,831,499	-				+0.3
4,831,502	+				-1.5
4,831,516	-				-0.4
4,831,564	-				+0.3
4,831,564	-				-0.9
4,831,564	-				-0.0
4,831,564	-				-0.0
4,831,579	+				-1.7
4,831,639	+				-0.8
4,831,646	+				-0.9
4,831,646	+				+0.2
4,831,654	-				+0.0
4,831,654	-				-1.0
4,831,654	-				-1.0
4,831,654	-				-0.6
4,831,654	-				-1.2
4,831,654	-				+1.0
4,831,664	-				+0.8
4,831,667	+				-0.4
4,831,667	+				-0.3
4,831,667	+				+0.3
4,831,675	-				-0.0
4,831,675	-				-0.5
4,831,675	-				+1.6
4,831,675	-				+0.6
4,831,690	-				+0.5
4,831,699	+				-1.1
4,831,733	+				-0.1
4,831,738	+				+0.6
4,831,738	+				+0.8
4,831,738	+				-0.5
4,831,746	-				+0.9
4,831,764	+				+0.4
4,831,770	-				-0.6
4,831,772	+				+1.0
4,831,772	+				-1.6
4,831,780	-				+0.5
4,831,780	-				-2.0
4,831,781	-				-0.9
4,831,799	-				-0.6
4,831,818	+				-1.0
4,831,837	+				-0.0
4,831,848	+				-0.1
4,831,850	+		GFF4849	0.10	-1.7
4,831,850	+		GFF4849	0.10	+0.3
4,831,856	-		GFF4849	0.12	-1.2
4,831,856	-		GFF4849	0.12	+0.8
4,831,858	-		GFF4849	0.12	+0.1
4,831,858	-		GFF4849	0.12	+1.2
4,831,863	-		GFF4849	0.14	+0.5
4,831,870	+		GFF4849	0.15	+0.9
4,831,873	-		GFF4849	0.16	+0.6
4,831,873	-		GFF4849	0.16	-0.4
4,831,886	+		GFF4849	0.19	-1.3
4,831,912	+		GFF4849	0.26	+0.5
4,831,920	-		GFF4849	0.28	+1.0
4,831,930	+		GFF4849	0.30	-1.1
4,831,936	+		GFF4849	0.32	+1.0
4,831,963	+		GFF4849	0.38	+0.7
4,831,976	+		GFF4849	0.41	+0.4
4,832,008	+		GFF4849	0.49	+0.7
4,832,027	+		GFF4849	0.54	+0.3
4,832,038	-		GFF4849	0.57	+2.0
4,832,039	+		GFF4849	0.57	-1.0
4,832,061	+		GFF4849	0.62	-1.9
4,832,061	+		GFF4849	0.62	-0.2
4,832,069	+		GFF4849	0.64	-0.7
4,832,077	-		GFF4849	0.66	+0.4
4,832,077	-		GFF4849	0.66	+0.2
4,832,082	+		GFF4849	0.68	-0.4
4,832,085	-		GFF4849	0.68	+0.1
4,832,087	+		GFF4849	0.69	-0.5
4,832,087	+		GFF4849	0.69	+0.5
4,832,087	+		GFF4849	0.69	+0.6
4,832,092	+		GFF4849	0.70	-0.7
4,832,100	-		GFF4849	0.72	+0.3
4,832,107	+		GFF4849	0.74	-1.0
4,832,115	-		GFF4849	0.76	-2.0
4,832,115	-		GFF4849	0.76	-2.1
4,832,132	+		GFF4849	0.80	-0.5
4,832,160	-		GFF4849	0.87	-1.3
4,832,182	-				-0.0
4,832,223	+				+1.0
4,832,273	+				-0.0
4,832,273	+				+2.0
4,832,273	+				-0.3
4,832,274	+				-0.1
4,832,279	+				-0.3
4,832,311	+				+1.2
4,832,312	+				-1.4