Strain Fitness in Sphingobium sp. HT1-2 around GFF4819

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,803,524	+		GFF4818	0.20	-1.9
4,803,524	+		GFF4818	0.20	+0.6
4,803,527	-		GFF4818	0.20	-0.5
4,803,532	-		GFF4818	0.21	-0.6
4,803,539	+		GFF4818	0.21	-0.3
4,803,549	-		GFF4818	0.22	-0.2
4,803,571	+		GFF4818	0.24	-0.9
4,803,615	-		GFF4818	0.28	-0.8
4,803,615	-		GFF4818	0.28	+1.4
4,803,647	+		GFF4818	0.31	-0.4
4,803,649	+		GFF4818	0.32	+0.7
4,803,649	+		GFF4818	0.32	-2.1
4,803,649	+		GFF4818	0.32	+0.7
4,803,649	+		GFF4818	0.32	-0.7
4,803,651	+		GFF4818	0.32	+0.5
4,803,651	+		GFF4818	0.32	-0.3
4,803,651	+		GFF4818	0.32	+0.3
4,803,651	+		GFF4818	0.32	-0.0
4,803,657	-		GFF4818	0.32	+0.4
4,803,657	-		GFF4818	0.32	+0.3
4,803,659	-		GFF4818	0.33	-1.9
4,803,679	+		GFF4818	0.34	-0.7
4,803,705	+		GFF4818	0.37	+0.6
4,803,716	+		GFF4818	0.38	-0.4
4,803,724	-		GFF4818	0.39	-0.3
4,803,741	-		GFF4818	0.40	+0.8
4,803,784	+		GFF4818	0.44	+1.3
4,803,784	+		GFF4818	0.44	-1.3
4,803,784	+		GFF4818	0.44	-1.8
4,803,792	-		GFF4818	0.45	+0.9
4,803,792	-		GFF4818	0.45	+0.1
4,803,792	-		GFF4818	0.45	+0.3
4,803,792	-		GFF4818	0.45	+0.3
4,803,816	+		GFF4818	0.47	+1.2
4,803,848	+		GFF4818	0.50	+0.1
4,803,848	+		GFF4818	0.50	+0.3
4,803,856	-		GFF4818	0.51	+0.5
4,803,856	-		GFF4818	0.51	-0.4
4,803,856	-		GFF4818	0.51	+0.6
4,803,856	-		GFF4818	0.51	-2.9
4,803,859	+		GFF4818	0.51	-0.1
4,803,869	+		GFF4818	0.52	-0.5
4,803,869	+		GFF4818	0.52	+0.6
4,803,877	-		GFF4818	0.53	-2.2
4,803,878	-		GFF4818	0.53	-0.1
4,803,883	-		GFF4818	0.54	+0.1
4,803,885	+		GFF4818	0.54	+0.5
4,803,885	-		GFF4818	0.54	-2.1
4,803,885	-		GFF4818	0.54	+1.4
4,803,893	-		GFF4818	0.55	+1.3
4,803,902	+		GFF4818	0.55	+0.0
4,803,912	+		GFF4818	0.56	-0.2
4,803,952	-		GFF4818	0.60	-0.4
4,803,956	-		GFF4818	0.60	-1.2
4,804,012	+		GFF4818	0.66	-0.3
4,804,012	+		GFF4818	0.66	+0.9
4,804,012	+		GFF4818	0.66	+1.0
4,804,020	-		GFF4818	0.66	-0.3
4,804,042	+		GFF4818	0.69	-0.2
4,804,042	+		GFF4818	0.69	-0.2
4,804,042	+		GFF4818	0.69	-0.5
4,804,046	-		GFF4818	0.69	-0.3
4,804,050	-		GFF4818	0.69	+0.5
4,804,050	-		GFF4818	0.69	+0.2
4,804,084	+		GFF4818	0.72	-0.0
4,804,084	+		GFF4818	0.72	+1.2
4,804,084	+		GFF4818	0.72	-0.2
4,804,092	-		GFF4818	0.73	-0.7
4,804,092	-		GFF4818	0.73	-1.5
4,804,092	-		GFF4818	0.73	-0.3
4,804,092	-		GFF4818	0.73	-0.3
4,804,092	-		GFF4818	0.73	-0.0
4,804,092	-		GFF4818	0.73	+0.8
4,804,092	-		GFF4818	0.73	+0.9
4,804,113	+		GFF4818	0.75	-1.9
4,804,137	+		GFF4818	0.77	-0.5
4,804,145	-		GFF4818	0.78	-0.4
4,804,186	-		GFF4818	0.82	-0.2
4,804,223	+		GFF4818	0.86	-0.3
4,804,223	+		GFF4818	0.86	+0.4
4,804,230	+		GFF4818	0.86	-1.9
4,804,231	-		GFF4818	0.86	+0.6
4,804,231	-		GFF4818	0.86	-1.3
4,804,231	-		GFF4818	0.86	+0.5
4,804,231	-		GFF4818	0.86	+0.4
4,804,231	-		GFF4818	0.86	-0.2
4,804,231	-		GFF4818	0.86	+0.6
4,804,231	-		GFF4818	0.86	-1.2
4,804,248	+		GFF4818	0.88	-0.3
4,804,262	+		GFF4818	0.89	+0.3
4,804,275	-				-3.0
4,804,275	-				+0.7
4,804,284	+				-1.4
4,804,304	+				-2.3
4,804,304	+				-0.2
4,804,304	+				+0.2
4,804,304	+				-1.4
4,804,312	-				+0.2
4,804,317	+				+1.4
4,804,322	+				-0.8
4,804,327	+				+0.3
4,804,408	-				-0.2
4,804,424	+				-0.3
4,804,439	+				-2.4
4,804,439	+				-1.8
4,804,439	-				-0.1
4,804,445	+				+0.1
4,804,457	-				-2.3
4,804,457	-				-0.3
4,804,459	+				-0.7
4,804,464	+				-1.7
4,804,498	+				-1.2
4,804,506	-				+0.7
4,804,529	-				-1.0
4,804,534	+				+0.6
4,804,534	+				+0.6
4,804,559	-				+1.4
4,804,560	-				+0.4
4,804,560	-				+0.1
4,804,585	+				-0.5
4,804,618	-				+0.2
4,804,620	+				-2.0
4,804,685	+				-0.1
4,804,685	+				-0.8
4,804,685	+				-0.3
4,804,685	+				-2.6
4,804,688	-				+0.1
4,804,690	+				+1.3
4,804,693	-				+0.6
4,804,693	-				+0.8
4,804,693	-				-0.2
4,804,693	-				-0.2
4,804,693	-				+0.5
4,804,693	-				-0.5
4,804,693	-				+0.6
4,804,693	-				+0.6
4,804,695	+				-0.1
4,804,695	+				+1.4
4,804,696	+				-2.4
4,804,715	-		GFF4819	0.10	-0.4
4,804,721	+		GFF4819	0.10	-1.7
4,804,731	+		GFF4819	0.11	+1.4
4,804,733	+		GFF4819	0.11	-1.1
4,804,739	-		GFF4819	0.11	+1.1
4,804,762	+		GFF4819	0.12	+0.8
4,804,762	+		GFF4819	0.12	+0.2
4,804,769	-		GFF4819	0.13	-0.9
4,804,784	+		GFF4819	0.13	-0.2
4,804,792	+		GFF4819	0.14	-0.4
4,804,792	+		GFF4819	0.14	+1.0
4,804,792	+		GFF4819	0.14	+0.6
4,804,792	+		GFF4819	0.14	+0.9
4,804,792	+		GFF4819	0.14	-0.0
4,804,792	+		GFF4819	0.14	+0.8
4,804,800	-		GFF4819	0.14	-1.9
4,804,800	-		GFF4819	0.14	+1.2
4,804,800	-		GFF4819	0.14	+1.3
4,804,802	+		GFF4819	0.14	-2.0
4,804,805	-		GFF4819	0.14	+0.2
4,804,805	-		GFF4819	0.14	+0.6
4,804,810	-		GFF4819	0.14	+0.1
4,804,818	-		GFF4819	0.15	+0.2
4,804,828	-		GFF4819	0.15	-0.1
4,804,918	-		GFF4819	0.19	-0.9
4,804,927	-		GFF4819	0.20	-1.5
4,804,945	-		GFF4819	0.20	-0.2
4,804,947	-		GFF4819	0.21	+1.3
4,804,976	+		GFF4819	0.22	+0.7
4,804,979	+		GFF4819	0.22	+0.1
4,804,983	+		GFF4819	0.22	-0.8
4,804,987	+		GFF4819	0.22	+0.4
4,804,989	-		GFF4819	0.22	-0.1
4,804,991	+		GFF4819	0.23	+0.4
4,804,991	-		GFF4819	0.23	+1.4
4,804,994	-		GFF4819	0.23	+0.3
4,804,994	-		GFF4819	0.23	-0.9
4,805,034	+		GFF4819	0.24	-0.8
4,805,034	+		GFF4819	0.24	+0.0
4,805,035	+		GFF4819	0.25	+0.6
4,805,036	+		GFF4819	0.25	+0.1
4,805,042	-		GFF4819	0.25	+0.4
4,805,051	+		GFF4819	0.25	-1.9
4,805,053	+		GFF4819	0.25	+1.1
4,805,053	+		GFF4819	0.25	+0.3
4,805,053	+		GFF4819	0.25	+0.0
4,805,053	+		GFF4819	0.25	-0.3
4,805,053	+		GFF4819	0.25	+0.4
4,805,053	+		GFF4819	0.25	-0.9
4,805,053	+		GFF4819	0.25	-1.2
4,805,053	+		GFF4819	0.25	+0.3
4,805,053	+		GFF4819	0.25	+0.9
4,805,058	+		GFF4819	0.26	+0.2
4,805,058	+		GFF4819	0.26	-1.6
4,805,058	+		GFF4819	0.26	+0.4
4,805,061	-		GFF4819	0.26	-0.8
4,805,061	-		GFF4819	0.26	-1.6
4,805,061	-		GFF4819	0.26	-0.2
4,805,061	-		GFF4819	0.26	+1.8
4,805,061	-		GFF4819	0.26	+0.6
4,805,061	-		GFF4819	0.26	-1.1
4,805,061	-		GFF4819	0.26	-0.5
4,805,061	-		GFF4819	0.26	-0.5
4,805,061	-		GFF4819	0.26	+0.4
4,805,066	-		GFF4819	0.26	-0.1
4,805,066	-		GFF4819	0.26	+0.1
4,805,066	-		GFF4819	0.26	+0.9
4,805,068	+		GFF4819	0.26	-0.8
4,805,075	+		GFF4819	0.26	-0.8
4,805,076	-		GFF4819	0.26	+0.4
4,805,083	-		GFF4819	0.27	+1.0
4,805,083	-		GFF4819	0.27	+0.8
4,805,089	-		GFF4819	0.27	-0.3
4,805,094	-		GFF4819	0.27	-0.7
4,805,095	-		GFF4819	0.27	+0.9
4,805,095	-		GFF4819	0.27	-0.2
4,805,102	+		GFF4819	0.28	+0.2
4,805,104	+		GFF4819	0.28	-0.8
4,805,104	+		GFF4819	0.28	-1.2
4,805,104	+		GFF4819	0.28	-2.3
4,805,109	+		GFF4819	0.28	+0.0
4,805,112	-		GFF4819	0.28	-1.1
4,805,143	-		GFF4819	0.29	-1.1
4,805,175	+		GFF4819	0.31	-1.9
4,805,205	-		GFF4819	0.32	-0.1
4,805,209	-		GFF4819	0.32	-0.3
4,805,223	+		GFF4819	0.33	-2.0
4,805,261	-		GFF4819	0.35	+0.1
4,805,272	+		GFF4819	0.35	-0.5
4,805,278	+		GFF4819	0.35	-1.0
4,805,283	+		GFF4819	0.36	-0.3
4,805,328	-		GFF4819	0.38	+0.0
4,805,330	-		GFF4819	0.38	-1.0
4,805,379	+		GFF4819	0.40	-0.2
4,805,387	-		GFF4819	0.40	+1.2
4,805,405	-		GFF4819	0.41	+1.0
4,805,420	-		GFF4819	0.42	+0.6
4,805,448	+		GFF4819	0.43	+1.1
4,805,456	-		GFF4819	0.43	-0.1
4,805,456	-		GFF4819	0.43	-0.3
4,805,477	-		GFF4819	0.44	+0.0
4,805,487	+		GFF4819	0.45	-0.7
4,805,508	+		GFF4819	0.46	-2.9
4,805,541	-		GFF4819	0.47	-0.5
4,805,584	+		GFF4819	0.49	-1.6
4,805,673	-		GFF4819	0.53	+0.6
4,805,704	-		GFF4819	0.55	+0.1
4,805,714	+		GFF4819	0.55	-0.6
4,805,719	+		GFF4819	0.55	+0.9
4,805,722	-		GFF4819	0.55	+0.2
4,805,726	-		GFF4819	0.56	+0.2
4,805,727	+		GFF4819	0.56	+0.6
4,805,737	+		GFF4819	0.56	+0.6
4,805,742	+		GFF4819	0.56	+0.1
4,805,747	+		GFF4819	0.57	+0.7
4,805,765	-		GFF4819	0.57	+0.3
4,805,772	+		GFF4819	0.58	-0.3
4,805,782	-		GFF4819	0.58	+0.7
4,805,793	+		GFF4819	0.59	-0.9
4,805,795	+		GFF4819	0.59	-0.5
4,805,795	+		GFF4819	0.59	-1.1
4,805,807	+		GFF4819	0.59	-0.1
4,805,808	-		GFF4819	0.59	+0.2
4,805,860	+		GFF4819	0.62	+0.5
4,805,868	-		GFF4819	0.62	-0.6
4,805,868	-		GFF4819	0.62	-1.1
4,805,886	+		GFF4819	0.63	+0.2
4,805,886	+		GFF4819	0.63	+0.2
4,805,894	-		GFF4819	0.63	-0.6
4,805,896	+		GFF4819	0.63	+0.6
4,805,902	-		GFF4819	0.64	+0.3
4,805,904	-		GFF4819	0.64	-0.4
4,805,918	+		GFF4819	0.64	+1.5
4,805,923	+		GFF4819	0.65	-0.1
4,805,929	+		GFF4819	0.65	+0.4
4,805,941	+		GFF4819	0.65	-2.0
4,805,949	-		GFF4819	0.66	+0.2
4,805,949	-		GFF4819	0.66	+0.5
4,805,949	-		GFF4819	0.66	-0.1
4,805,954	+		GFF4819	0.66	+0.3
4,805,977	-		GFF4819	0.67	+0.4
4,805,977	-		GFF4819	0.67	+1.6
4,805,977	-		GFF4819	0.67	-0.6
4,805,994	+		GFF4819	0.68	-1.0
4,806,002	-		GFF4819	0.68	+0.1
4,806,009	-		GFF4819	0.68	-2.2
4,806,009	-		GFF4819	0.68	+0.7
4,806,010	+		GFF4819	0.68	+0.5
4,806,013	+		GFF4819	0.69	-1.3
4,806,017	-		GFF4819	0.69	+0.1
4,806,046	+		GFF4819	0.70	-1.1
4,806,061	+		GFF4819	0.71	+0.8
4,806,061	+		GFF4819	0.71	-1.1
4,806,061	+		GFF4819	0.71	+1.3
4,806,069	-		GFF4819	0.71	-0.1
4,806,097	+		GFF4819	0.72	-0.9
4,806,105	-		GFF4819	0.73	+0.1
4,806,107	+		GFF4819	0.73	+0.1
4,806,115	-		GFF4819	0.73	-0.9
4,806,115	-		GFF4819	0.73	+0.7
4,806,115	-		GFF4819	0.73	+0.6
4,806,125	+		GFF4819	0.74	+0.1
4,806,125	+		GFF4819	0.74	-1.6
4,806,125	+		GFF4819	0.74	+0.5
4,806,133	-		GFF4819	0.74	-1.0
4,806,133	-		GFF4819	0.74	+0.6
4,806,150	+		GFF4819	0.75	+0.4
4,806,152	+		GFF4819	0.75	+0.5
4,806,158	+		GFF4819	0.75	+0.8
4,806,168	+		GFF4819	0.76	+1.1
4,806,176	-		GFF4819	0.76	-0.5
4,806,178	-		GFF4819	0.76	-0.8
4,806,179	-		GFF4819	0.76	-0.1
4,806,183	+		GFF4819	0.76	-0.5
4,806,196	-		GFF4819	0.77	-1.4
4,806,205	+		GFF4819	0.77	-0.6
4,806,205	+		GFF4819	0.77	+1.0
4,806,205	+		GFF4819	0.77	-1.4
4,806,208	-		GFF4819	0.77	-0.4
4,806,213	-		GFF4819	0.78	-2.1
4,806,232	+		GFF4819	0.78	-0.7
4,806,237	+		GFF4819	0.79	+1.0
4,806,237	+		GFF4819	0.79	+1.1
4,806,245	-		GFF4819	0.79	+0.8
4,806,245	-		GFF4819	0.79	+0.3
4,806,251	-		GFF4819	0.79	+0.4
4,806,292	-		GFF4819	0.81	-0.6
4,806,339	+		GFF4819	0.83	-0.2
4,806,347	-		GFF4819	0.84	-0.1
4,806,368	+		GFF4819	0.85	+0.8
4,806,373	+		GFF4819	0.85	+1.5
4,806,376	-		GFF4819	0.85	+1.3
4,806,383	+		GFF4819	0.85	-0.4
4,806,391	-		GFF4819	0.86	-0.6
4,806,398	+		GFF4819	0.86	+1.0
4,806,413	-		GFF4819	0.87	+0.4
4,806,413	-		GFF4819	0.87	+0.0
4,806,428	-		GFF4819	0.87	+0.1
4,806,431	+		GFF4819	0.87	-0.0
4,806,431	+		GFF4819	0.87	-0.9
4,806,431	+		GFF4819	0.87	+0.7
4,806,431	+		GFF4819	0.87	+0.2
4,806,439	-		GFF4819	0.88	+0.9
4,806,444	-		GFF4819	0.88	+1.2
4,806,448	+		GFF4819	0.88	-0.3
4,806,460	+		GFF4819	0.89	+0.3
4,806,480	-		GFF4819	0.90	+1.2
4,806,480	-		GFF4819	0.90	+1.1
4,806,480	-		GFF4819	0.90	+0.5
4,806,495	-				-0.0
4,806,514	-				-0.2
4,806,515	+				-0.8
4,806,515	+				-1.2
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