Strain Fitness in Sphingobium sp. HT1-2 around GFF4808

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,797,700	+				-1.7
4,797,703	-				+0.1
4,797,703	-				-0.4
4,797,708	-				+1.0
4,797,708	-				-0.7
4,797,723	+				-0.3
4,797,782	+		GFF4806	0.35	+0.3
4,797,782	+		GFF4806	0.35	+0.4
4,797,782	+		GFF4806	0.35	-0.7
4,797,783	+		GFF4806	0.36	+0.7
4,797,787	+		GFF4806	0.38	+1.3
4,797,790	-		GFF4806	0.40	+0.5
4,797,790	-		GFF4806	0.40	-0.7
4,797,823	+		GFF4806	0.59	-1.2
4,797,835	+		GFF4806	0.66	+0.8
4,797,840	+		GFF4806	0.68	-1.4
4,797,844	+		GFF4806	0.71	-1.2
4,797,848	-		GFF4806	0.73	-0.2
4,797,888	+				-0.7
4,797,888	+				-1.8
4,797,888	+				+1.1
4,797,888	+				+0.4
4,797,896	-				+0.0
4,797,896	-				-1.8
4,797,896	-				+0.8
4,797,901	-				+0.1
4,797,936	+				+0.2
4,797,971	-				-2.0
4,798,021	+				+1.2
4,798,021	+				+0.4
4,798,021	+				+0.3
4,798,021	+				-0.3
4,798,021	+				+0.9
4,798,021	+				-0.5
4,798,021	+				-0.4
4,798,021	+				-0.4
4,798,029	-				+0.7
4,798,029	-				-1.4
4,798,029	-				-1.0
4,798,029	-				+0.4
4,798,029	-				-1.6
4,798,035	+				-0.9
4,798,037	+				+0.5
4,798,042	+				-2.2
4,798,042	+				+0.3
4,798,057	+				+0.3
4,798,057	+				-1.0
4,798,057	+				-0.4
4,798,057	+				+0.6
4,798,065	-				-0.5
4,798,067	-				+1.2
4,798,078	+				-0.7
4,798,078	+				-0.2
4,798,079	+				-0.5
4,798,086	-				+0.8
4,798,086	-				-0.9
4,798,086	-				+0.5
4,798,086	-				-0.8
4,798,086	-				-1.1
4,798,105	+				-0.5
4,798,123	-				-0.1
4,798,133	+				+1.2
4,798,135	+				-0.9
4,798,143	-				-1.8
4,798,178	+				-1.0
4,798,219	-				+1.1
4,798,254	+				-0.2
4,798,259	+				-0.2
4,798,262	-				-0.9
4,798,272	+				-0.9
4,798,280	-				+0.2
4,798,280	-				-0.2
4,798,280	-				-0.2
4,798,295	+				+0.8
4,798,300	-				-1.8
4,798,300	-				-0.0
4,798,321	+				+0.2
4,798,359	+				-0.0
4,798,372	-				+0.3
4,798,377	-				+0.3
4,798,395	+				+1.1
4,798,460	+		GFF4807	0.54	-0.7
4,798,465	+		GFF4807	0.59	+0.7
4,798,473	-		GFF4807	0.66	-2.2
4,798,498	+		GFF4807	0.88	+1.2
4,798,498	+		GFF4807	0.88	+0.5
4,798,498	+		GFF4807	0.88	+0.8
4,798,498	+		GFF4807	0.88	-0.7
4,798,506	-				+0.2
4,798,506	-				-1.9
4,798,506	-				-0.5
4,798,506	-				-2.0
4,798,508	+				-1.2
4,798,516	-				-0.7
4,798,570	+				-1.6
4,798,578	-				-1.8
4,798,601	-				-0.0
4,798,606	-				+0.3
4,798,615	+				-1.0
4,798,616	+				+0.5
4,798,624	-				+1.4
4,798,633	-				-2.5
4,798,658	+				+0.5
4,798,709	-				-1.0
4,798,710	+				-1.2
4,798,718	-				+0.9
4,798,757	+				+0.4
4,798,776	-				+0.4
4,798,848	+		GFF4808	0.17	-0.4
4,798,878	+		GFF4808	0.20	-0.4
4,798,883	+		GFF4808	0.21	+1.8
4,798,886	-		GFF4808	0.21	-0.4
4,798,890	+		GFF4808	0.21	+0.8
4,798,891	-		GFF4808	0.22	-0.9
4,798,924	-		GFF4808	0.25	+1.4
4,798,938	+		GFF4808	0.27	+0.2
4,798,938	+		GFF4808	0.27	-0.3
4,798,938	+		GFF4808	0.27	-1.7
4,798,946	-		GFF4808	0.28	+0.0
4,798,953	+		GFF4808	0.28	+0.9
4,798,957	+		GFF4808	0.29	+0.1
4,798,962	+		GFF4808	0.30	-0.9
4,798,970	-		GFF4808	0.30	+0.6
4,799,005	+		GFF4808	0.34	+1.0
4,799,060	+		GFF4808	0.41	+0.6
4,799,083	+		GFF4808	0.43	+0.0
4,799,089	+		GFF4808	0.44	-1.9
4,799,089	+		GFF4808	0.44	+0.5
4,799,097	-		GFF4808	0.45	+0.2
4,799,097	-		GFF4808	0.45	-0.9
4,799,097	-		GFF4808	0.45	+0.7
4,799,128	+		GFF4808	0.48	+0.0
4,799,134	-		GFF4808	0.49	+0.3
4,799,141	+		GFF4808	0.50	-0.1
4,799,149	-		GFF4808	0.51	-0.4
4,799,158	+		GFF4808	0.52	-2.3
4,799,166	-		GFF4808	0.52	-0.8
4,799,173	-		GFF4808	0.53	-0.5
4,799,175	+		GFF4808	0.53	-1.0
4,799,233	-		GFF4808	0.60	+1.1
4,799,234	+		GFF4808	0.60	-2.6
4,799,234	+		GFF4808	0.60	-1.1
4,799,234	+		GFF4808	0.60	+1.0
4,799,234	+		GFF4808	0.60	+0.3
4,799,234	+		GFF4808	0.60	+1.3
4,799,234	+		GFF4808	0.60	-0.4
4,799,242	-		GFF4808	0.61	-0.1
4,799,243	+		GFF4808	0.61	+0.8
4,799,243	+		GFF4808	0.61	+0.5
4,799,244	+		GFF4808	0.61	+0.5
4,799,251	-		GFF4808	0.62	-1.1
4,799,251	-		GFF4808	0.62	+1.6
4,799,287	-		GFF4808	0.66	+0.5
4,799,294	+		GFF4808	0.67	-0.6
4,799,294	+		GFF4808	0.67	-2.0
4,799,294	+		GFF4808	0.67	-0.2
4,799,294	+		GFF4808	0.67	+1.3
4,799,299	+		GFF4808	0.67	+0.3
4,799,300	-		GFF4808	0.68	+1.5
4,799,300	-		GFF4808	0.68	-0.5
4,799,302	-		GFF4808	0.68	+2.3
4,799,302	-		GFF4808	0.68	-0.8
4,799,302	-		GFF4808	0.68	+0.4
4,799,302	-		GFF4808	0.68	-2.0
4,799,302	-		GFF4808	0.68	+1.0
4,799,307	-		GFF4808	0.68	-0.9
4,799,307	-		GFF4808	0.68	-0.3
4,799,321	-		GFF4808	0.70	-0.3
4,799,321	-		GFF4808	0.70	-1.9
4,799,354	-		GFF4808	0.74	-0.9
4,799,359	+		GFF4808	0.74	-1.7
4,799,359	-		GFF4808	0.74	+0.2
4,799,359	-		GFF4808	0.74	-0.9
4,799,366	+		GFF4808	0.75	-0.4
4,799,367	-		GFF4808	0.75	+0.2
4,799,374	-		GFF4808	0.76	-2.5
4,799,374	-		GFF4808	0.76	+1.2
4,799,374	-		GFF4808	0.76	-0.5
4,799,374	-		GFF4808	0.76	+0.7
4,799,376	+		GFF4808	0.76	+0.7
4,799,376	+		GFF4808	0.76	+0.4
4,799,376	+		GFF4808	0.76	-0.8
4,799,430	+		GFF4808	0.82	+0.9
4,799,445	-		GFF4808	0.84	+0.1
4,799,445	-		GFF4808	0.84	-0.7
4,799,449	+		GFF4808	0.84	-2.0
4,799,469	-		GFF4808	0.87	-0.2
4,799,477	+		GFF4808	0.88	+1.0
4,799,494	-		GFF4808	0.89	-3.2
4,799,509	+				-0.2
4,799,533	+				-1.0
4,799,550	+				+0.3
4,799,550	+				-1.7
4,799,558	-				+1.0
4,799,572	+				+0.2
4,799,572	+				-1.1
4,799,589	-				-0.5
4,799,590	+				-0.3
4,799,602	-				+0.3
4,799,616	-				+1.3
4,799,627	+		GFF4809	0.11	+0.8
4,799,635	-		GFF4809	0.14	-0.4
4,799,703	+		GFF4809	0.33	+0.4
4,799,703	+		GFF4809	0.33	+0.3
4,799,704	+		GFF4809	0.34	+1.0
4,799,740	+		GFF4809	0.44	+0.1
4,799,740	+		GFF4809	0.44	-0.6
4,799,740	+		GFF4809	0.44	-0.4
4,799,740	+		GFF4809	0.44	-0.1
4,799,748	-		GFF4809	0.46	+0.2
4,799,748	-		GFF4809	0.46	-1.2
4,799,748	-		GFF4809	0.46	-1.6
4,799,748	-		GFF4809	0.46	-2.5
4,799,748	-		GFF4809	0.46	+0.2
4,799,748	-		GFF4809	0.46	-1.1
4,799,748	-		GFF4809	0.46	+0.6
4,799,748	-		GFF4809	0.46	+0.4
4,799,748	-		GFF4809	0.46	-0.2
4,799,748	-		GFF4809	0.46	+0.5
4,799,752	+		GFF4809	0.47	-0.9
4,799,805	-		GFF4809	0.63	+0.2
4,799,825	-		GFF4809	0.68	-1.2
4,799,856	+		GFF4809	0.77	+1.0
4,799,890	+		GFF4809	0.87	+1.0
4,799,905	+				+0.9
4,799,921	+				-0.1
4,800,029	-				-1.8
4,800,048	+				+1.1
4,800,058	+				-0.0
4,800,058	+				+0.2
4,800,058	+				+0.4
4,800,079	-				+0.1
4,800,082	+				-0.7
4,800,082	+				+0.8
4,800,090	-				-1.7
4,800,096	-				-1.7
4,800,122	-				-0.5
4,800,126	+				+0.4
4,800,126	+				-0.8
4,800,126	+				-0.8
4,800,137	-				-0.2
4,800,159	+		GFF4810	0.12	+0.8
4,800,167	-		GFF4810	0.13	-0.2
4,800,167	-		GFF4810	0.13	+0.0
4,800,175	-		GFF4810	0.13	+0.4
4,800,178	+		GFF4810	0.14	-1.4
4,800,216	+		GFF4810	0.18	-0.9
4,800,221	+		GFF4810	0.19	+0.5
4,800,222	-		GFF4810	0.19	+0.6
4,800,224	-		GFF4810	0.19	-1.0
4,800,226	+		GFF4810	0.19	-0.1
4,800,226	+		GFF4810	0.19	+1.4
4,800,234	+		GFF4810	0.20	-0.3
4,800,239	+		GFF4810	0.21	+0.5
4,800,239	+		GFF4810	0.21	-0.6
4,800,247	-		GFF4810	0.21	+0.4
4,800,276	-		GFF4810	0.25	+0.4
4,800,280	-		GFF4810	0.25	-1.5
4,800,289	-		GFF4810	0.26	+0.5
4,800,313	+		GFF4810	0.29	+0.6
4,800,314	-		GFF4810	0.29	+1.5
4,800,318	+		GFF4810	0.29	+1.3
4,800,346	+		GFF4810	0.33	-2.9
4,800,354	-		GFF4810	0.33	-0.4
4,800,354	-		GFF4810	0.33	+0.2
4,800,366	+		GFF4810	0.35	-1.2
4,800,373	+		GFF4810	0.36	-1.6
4,800,373	+		GFF4810	0.36	+0.3
4,800,373	+		GFF4810	0.36	-1.8
4,800,373	+		GFF4810	0.36	+0.1
4,800,376	-		GFF4810	0.36	-1.0
4,800,381	-		GFF4810	0.36	+1.0
4,800,381	-		GFF4810	0.36	-0.0
4,800,381	-		GFF4810	0.36	+0.9
4,800,381	-		GFF4810	0.36	+0.9
4,800,381	-		GFF4810	0.36	+0.2
4,800,381	-		GFF4810	0.36	+0.9
4,800,381	-		GFF4810	0.36	-0.5
4,800,384	+		GFF4810	0.37	-0.9
4,800,394	+		GFF4810	0.38	-0.8
4,800,394	-		GFF4810	0.38	-0.5
4,800,418	+		GFF4810	0.41	-0.9
4,800,425	+		GFF4810	0.41	-0.5
4,800,433	-		GFF4810	0.42	+1.0
4,800,435	+		GFF4810	0.43	-0.8
4,800,435	+		GFF4810	0.43	-0.3
4,800,435	+		GFF4810	0.43	+0.3
4,800,435	+		GFF4810	0.43	-0.4
4,800,440	+		GFF4810	0.43	+0.3
4,800,443	-		GFF4810	0.43	-3.0
4,800,443	-		GFF4810	0.43	+1.1
4,800,443	-		GFF4810	0.43	-0.0
4,800,443	-		GFF4810	0.43	+1.0
4,800,443	-		GFF4810	0.43	+0.3
4,800,443	-		GFF4810	0.43	+0.4
4,800,443	-		GFF4810	0.43	-1.7
4,800,453	-		GFF4810	0.45	-1.6
4,800,471	-		GFF4810	0.47	-0.8
4,800,493	+		GFF4810	0.49	-1.8
4,800,500	+		GFF4810	0.50	+0.3
4,800,500	+		GFF4810	0.50	+0.6
4,800,500	+		GFF4810	0.50	-1.1
4,800,543	+		GFF4810	0.55	+0.4
4,800,585	-		GFF4810	0.59	+0.5