Strain Fitness in Sphingobium sp. HT1-2 around GFF4796

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,790,572	-				-1.2
4,790,596	-				+0.3
4,790,658	+				-0.2
4,790,666	+				-0.4
4,790,678	-				-0.8
4,790,679	+				-1.0
4,790,705	+				-1.4
4,790,705	+				-0.4
4,790,705	+				-0.9
4,790,705	+				-0.8
4,790,705	+				-1.4
4,790,712	+				-1.3
4,790,713	-				-3.4
4,790,713	-				+0.9
4,790,713	-				-1.9
4,790,713	-				+0.1
4,790,713	-				-1.8
4,790,725	-				-0.0
4,790,727	+				-0.6
4,790,745	-				+0.2
4,790,745	-				-0.9
4,790,771	+				-1.2
4,790,771	+				-2.0
4,790,771	+				-1.8
4,790,771	+				-0.2
4,790,771	+				+1.0
4,790,771	+				-0.1
4,790,771	+				+1.3
4,790,771	+				+1.1
4,790,771	+				-2.0
4,790,771	+				+0.2
4,790,773	-				+0.9
4,790,779	-				-0.2
4,790,779	-				-0.1
4,790,779	-				-0.3
4,790,779	-				-2.9
4,790,779	-				-1.4
4,790,779	-				-0.2
4,790,779	-				-0.6
4,790,779	-				-0.9
4,790,790	-				-0.7
4,790,790	-				+0.2
4,790,790	-				-0.5
4,790,819	+		GFF4795	0.13	-1.9
4,790,826	+		GFF4795	0.15	-0.3
4,790,850	+		GFF4795	0.20	-0.7
4,790,850	-		GFF4795	0.20	-1.9
4,790,850	-		GFF4795	0.20	+0.0
4,790,858	+		GFF4795	0.22	-2.8
4,790,858	+		GFF4795	0.22	-1.7
4,790,858	-		GFF4795	0.22	-0.6
4,790,860	-		GFF4795	0.23	-2.1
4,790,860	-		GFF4795	0.23	-3.0
4,790,862	+		GFF4795	0.23	-1.2
4,790,881	-		GFF4795	0.27	-0.1
4,790,890	+		GFF4795	0.29	-1.8
4,790,890	+		GFF4795	0.29	-0.8
4,790,890	+		GFF4795	0.29	-1.5
4,790,890	+		GFF4795	0.29	-2.7
4,790,898	-		GFF4795	0.31	+0.4
4,790,898	-		GFF4795	0.31	-1.9
4,790,898	-		GFF4795	0.31	-0.8
4,790,898	-		GFF4795	0.31	-0.1
4,790,898	-		GFF4795	0.31	-0.4
4,790,905	+		GFF4795	0.32	-0.2
4,790,920	-		GFF4795	0.36	-3.2
4,790,927	+		GFF4795	0.37	-0.9
4,790,933	-		GFF4795	0.39	-2.1
4,790,940	-		GFF4795	0.40	-1.7
4,790,947	+		GFF4795	0.42	-0.6
4,790,947	+		GFF4795	0.42	-3.1
4,790,947	+		GFF4795	0.42	-1.7
4,790,955	-		GFF4795	0.43	-1.1
4,790,955	-		GFF4795	0.43	-2.1
4,790,955	-		GFF4795	0.43	-1.3
4,790,957	+		GFF4795	0.44	-0.2
4,790,957	+		GFF4795	0.44	-2.2
4,790,957	+		GFF4795	0.44	-0.8
4,790,957	+		GFF4795	0.44	-2.4
4,790,957	+		GFF4795	0.44	-0.0
4,790,957	+		GFF4795	0.44	+0.4
4,790,957	+		GFF4795	0.44	-2.1
4,790,957	+		GFF4795	0.44	+0.6
4,790,957	+		GFF4795	0.44	-1.0
4,790,957	+		GFF4795	0.44	-1.7
4,790,957	+		GFF4795	0.44	-2.6
4,790,965	-		GFF4795	0.46	-1.2
4,790,965	-		GFF4795	0.46	-1.7
4,790,965	-		GFF4795	0.46	-0.8
4,790,965	-		GFF4795	0.46	-0.1
4,790,965	-		GFF4795	0.46	-0.4
4,790,965	-		GFF4795	0.46	-0.6
4,790,965	-		GFF4795	0.46	-2.1
4,790,965	-		GFF4795	0.46	-0.9
4,790,965	-		GFF4795	0.46	-2.0
4,790,965	-		GFF4795	0.46	-1.0
4,790,967	+		GFF4795	0.46	-1.7
4,790,973	+		GFF4795	0.47	+0.2
4,790,975	-		GFF4795	0.48	+0.5
4,790,976	-		GFF4795	0.48	+0.3
4,790,979	+		GFF4795	0.49	-0.3
4,790,988	-		GFF4795	0.51	-1.2
4,791,006	-		GFF4795	0.55	+0.2
4,791,015	+		GFF4795	0.57	-1.8
4,791,032	-		GFF4795	0.60	-1.0
4,791,037	+		GFF4795	0.62	-2.3
4,791,037	+		GFF4795	0.62	-1.3
4,791,045	-		GFF4795	0.63	-2.7
4,791,068	-		GFF4795	0.68	+0.1
4,791,069	-		GFF4795	0.69	-2.0
4,791,071	+		GFF4795	0.69	-1.2
4,791,099	+		GFF4795	0.75	-1.2
4,791,107	-		GFF4795	0.77	-1.8
4,791,110	-		GFF4795	0.78	-1.6
4,791,123	-		GFF4795	0.81	-1.7
4,791,125	+		GFF4795	0.81	-2.8
4,791,131	-		GFF4795	0.82	-1.1
4,791,151	+		GFF4795	0.87	-1.1
4,791,153	+		GFF4795	0.87	-3.3
4,791,153	+		GFF4795	0.87	-1.8
4,791,153	+		GFF4795	0.87	-0.3
4,791,153	+		GFF4795	0.87	-1.8
4,791,153	+		GFF4795	0.87	-1.3
4,791,153	+		GFF4795	0.87	-1.0
4,791,153	+		GFF4795	0.87	-0.4
4,791,153	+		GFF4795	0.87	-2.9
4,791,153	+		GFF4795	0.87	+0.3
4,791,153	+		GFF4795	0.87	-1.2
4,791,153	+		GFF4795	0.87	-1.0
4,791,153	+		GFF4795	0.87	+0.2
4,791,153	+		GFF4795	0.87	-1.0
4,791,153	+		GFF4795	0.87	-0.7
4,791,153	+		GFF4795	0.87	-0.9
4,791,153	+		GFF4795	0.87	-1.6
4,791,153	+		GFF4795	0.87	-0.6
4,791,153	+		GFF4795	0.87	-2.2
4,791,153	+		GFF4795	0.87	-1.0
4,791,153	+		GFF4795	0.87	-1.1
4,791,161	-		GFF4795	0.89	-1.3
4,791,161	-		GFF4795	0.89	+1.5
4,791,161	-		GFF4795	0.89	-0.6
4,791,161	-		GFF4795	0.89	+0.9
4,791,161	-		GFF4795	0.89	-1.0
4,791,161	-		GFF4795	0.89	+0.2
4,791,161	-		GFF4795	0.89	-1.0
4,791,161	-		GFF4795	0.89	+0.3
4,791,161	-		GFF4795	0.89	+0.6
4,791,161	-		GFF4795	0.89	-1.4
4,791,161	-		GFF4795	0.89	-1.3
4,791,161	-		GFF4795	0.89	+0.1
4,791,161	-		GFF4795	0.89	-0.7
4,791,161	-		GFF4795	0.89	-1.1
4,791,161	-		GFF4795	0.89	-2.7
4,791,161	-		GFF4795	0.89	-2.4
4,791,161	-		GFF4795	0.89	-0.1
4,791,161	-		GFF4795	0.89	-0.9
4,791,161	-		GFF4795	0.89	-1.5
4,791,161	-		GFF4795	0.89	-3.0
4,791,161	-		GFF4795	0.89	-0.4
4,791,161	-		GFF4795	0.89	-0.9
4,791,161	-		GFF4795	0.89	-1.3
4,791,161	-		GFF4795	0.89	+1.6
4,791,161	-		GFF4795	0.89	-2.9
4,791,161	-		GFF4795	0.89	-2.5
4,791,161	-		GFF4795	0.89	+0.1
4,791,161	-		GFF4795	0.89	-2.2
4,791,161	-		GFF4795	0.89	-1.0
4,791,161	-		GFF4795	0.89	-0.5
4,791,161	-		GFF4795	0.89	-1.0
4,791,161	-		GFF4795	0.89	-0.0
4,791,161	-		GFF4795	0.89	-1.8
4,791,176	+				-1.9
4,791,214	+				-0.8
4,791,221	+				-0.1
4,791,251	+				+0.3
4,791,261	+				+0.1
4,791,269	-				-1.1
4,791,287	-				-0.4
4,791,287	-				+0.5
4,791,298	+				-0.3
4,791,306	+				-0.2
4,791,346	+				+0.2
4,791,354	-				+0.3
4,791,361	+				-0.8
4,791,361	+				-1.0
4,791,369	-				-1.3
4,791,442	-		GFF4796	0.18	-0.6
4,791,460	+		GFF4796	0.21	+0.3
4,791,471	+		GFF4796	0.23	-0.9
4,791,471	+		GFF4796	0.23	+0.6
4,791,471	+		GFF4796	0.23	-2.8
4,791,471	+		GFF4796	0.23	-1.9
4,791,471	+		GFF4796	0.23	-3.4
4,791,476	+		GFF4796	0.23	-0.8
4,791,479	-		GFF4796	0.24	-1.3
4,791,479	-		GFF4796	0.24	-1.7
4,791,479	-		GFF4796	0.24	-0.7
4,791,479	-		GFF4796	0.24	+0.3
4,791,491	+		GFF4796	0.26	-1.7
4,791,491	+		GFF4796	0.26	+0.3
4,791,491	+		GFF4796	0.26	-0.7
4,791,491	+		GFF4796	0.26	+0.2
4,791,491	+		GFF4796	0.26	+0.3
4,791,495	+		GFF4796	0.26	-1.4
4,791,499	-		GFF4796	0.27	-0.2
4,791,508	+		GFF4796	0.28	+0.2
4,791,525	+		GFF4796	0.31	-1.0
4,791,526	+		GFF4796	0.31	-2.1
4,791,526	+		GFF4796	0.31	-1.0
4,791,526	+		GFF4796	0.31	-0.7
4,791,531	+		GFF4796	0.31	+0.8
4,791,531	+		GFF4796	0.31	+0.2
4,791,534	-		GFF4796	0.32	+0.5
4,791,534	-		GFF4796	0.32	-0.3
4,791,539	-		GFF4796	0.33	-0.7
4,791,658	-		GFF4796	0.50	-0.5
4,791,673	+		GFF4796	0.52	-1.7
4,791,702	-		GFF4796	0.56	-1.6
4,791,727	-		GFF4796	0.60	-1.9
4,791,729	+		GFF4796	0.60	-0.1
4,791,729	+		GFF4796	0.60	-2.2
4,791,729	+		GFF4796	0.60	-0.6
4,791,762	+		GFF4796	0.65	-1.4
4,791,770	-		GFF4796	0.66	+0.4
4,791,791	+		GFF4796	0.69	-0.0
4,791,819	-		GFF4796	0.73	-0.4
4,791,833	-		GFF4796	0.75	-1.0
4,791,844	-		GFF4796	0.77	+0.1
4,791,844	-		GFF4796	0.77	-0.9
4,791,852	-		GFF4796	0.78	-0.0
4,791,879	+		GFF4796	0.82	-2.7
4,791,949	-				-3.0
4,791,949	-				-1.2
4,791,955	+				+0.5
4,791,963	-				-1.3
4,791,963	-				+0.8
4,791,980	-				+0.8
4,791,980	-				-0.4
4,791,985	-				-1.4
4,792,005	-				-2.3
4,792,005	-				-0.8
4,792,007	-				-1.0
4,792,028	+				-2.8
4,792,031	-				-3.0
4,792,036	-				-0.8
4,792,036	-				-0.8
4,792,050	-				-3.2
4,792,134	+		GFF4797	0.16	-1.0
4,792,137	-		GFF4797	0.17	-1.9
4,792,158	+		GFF4797	0.20	+0.3
4,792,158	+		GFF4797	0.20	+0.4
4,792,161	-		GFF4797	0.20	-0.9
4,792,163	+		GFF4797	0.20	-2.3
4,792,163	+		GFF4797	0.20	+0.3
4,792,166	-		GFF4797	0.21	-0.4
4,792,171	-		GFF4797	0.21	-0.9
4,792,271	+		GFF4797	0.35	-0.1
4,792,271	+		GFF4797	0.35	-0.4
4,792,271	+		GFF4797	0.35	-0.9
4,792,271	+		GFF4797	0.35	+0.6
4,792,279	-		GFF4797	0.36	-1.4
4,792,279	-		GFF4797	0.36	-1.4
4,792,279	-		GFF4797	0.36	-1.7
4,792,279	-		GFF4797	0.36	-0.0
4,792,287	+		GFF4797	0.37	-0.4
4,792,295	-		GFF4797	0.39	-0.5
4,792,297	-		GFF4797	0.39	-0.7
4,792,336	-		GFF4797	0.44	+0.0
4,792,339	+		GFF4797	0.45	-1.6
4,792,343	+		GFF4797	0.45	-1.2
4,792,343	+		GFF4797	0.45	-0.2
4,792,344	+		GFF4797	0.45	-2.1
4,792,351	-		GFF4797	0.46	-0.3
4,792,351	-		GFF4797	0.46	-0.0
4,792,351	-		GFF4797	0.46	+0.7
4,792,387	+		GFF4797	0.51	-0.0
4,792,395	-		GFF4797	0.52	-0.2
4,792,396	-		GFF4797	0.53	-1.0
4,792,398	+		GFF4797	0.53	-0.6
4,792,398	+		GFF4797	0.53	-1.0
4,792,403	+		GFF4797	0.54	-0.6
4,792,406	-		GFF4797	0.54	+0.6
4,792,406	-		GFF4797	0.54	+0.6
4,792,406	-		GFF4797	0.54	-0.1
4,792,436	+		GFF4797	0.58	+0.9
4,792,455	-		GFF4797	0.61	-0.7
4,792,455	-		GFF4797	0.61	-0.2
4,792,455	-		GFF4797	0.61	-0.6
4,792,455	-		GFF4797	0.61	-0.2
4,792,455	-		GFF4797	0.61	-0.7
4,792,471	+		GFF4797	0.63	-0.3
4,792,507	-		GFF4797	0.68	-0.3
4,792,537	+		GFF4797	0.72	-1.1
4,792,571	+		GFF4797	0.77	-2.6
4,792,571	+		GFF4797	0.77	-2.0
4,792,572	-		GFF4797	0.77	-1.4
4,792,579	-		GFF4797	0.78	-1.4
4,792,579	-		GFF4797	0.78	-0.4
4,792,587	-		GFF4797	0.79	-0.9
4,792,641	-		GFF4797	0.86	-0.2
4,792,651	-		GFF4797	0.88	+0.7
4,792,651	-		GFF4797	0.88	-1.2
4,792,657	-		GFF4797	0.89	+0.4
4,792,658	-		GFF4797	0.89	-0.7
4,792,675	+				+0.2
4,792,676	+				-0.5
4,792,681	+				-1.6
4,792,681	+				-2.1
4,792,684	-				-0.7
4,792,684	-				-0.2
4,792,689	-				+1.2
4,792,702	-				-0.3
4,792,702	-				+0.0
4,792,710	+				-2.3
4,792,710	+				-0.5
4,792,710	+				-2.3
4,792,746	+				-1.0
4,792,765	-				-2.4
4,792,769	+				-0.6
4,792,769	+				-2.6
4,792,769	+				-2.7
4,792,769	+				-2.3
4,792,777	-				-2.0
4,792,777	-				-0.9
4,792,777	-				-0.4
4,792,784	+				-0.8
4,792,792	-				-1.0
4,792,792	-				-1.0
4,792,796	-				+0.3
4,792,818	-				-1.0
4,792,822	+				-0.0
4,792,875	-				-0.8
4,792,875	-				-0.6
4,792,943	-				-0.2
4,792,953	-				-0.9
4,792,953	-				-0.9
4,792,959	+				-2.6
4,792,959	+				-0.2
4,792,961	+				-0.1
4,792,961	+				+0.1
4,792,967	+				-0.4
4,792,967	-				-0.2
4,792,967	-				-2.8
4,792,972	+				+0.4
4,792,993	+				-2.6
4,792,993	+				-1.1
4,793,001	-				-1.4