Strain Fitness in Sphingobium sp. HT1-2 around GFF4790

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,784,405	-		GFF4788	0.62	+0.3
4,784,416	+		GFF4788	0.63	-0.9
4,784,416	+		GFF4788	0.63	+1.6
4,784,418	+		GFF4788	0.63	-2.3
4,784,424	-		GFF4788	0.64	-0.7
4,784,424	-		GFF4788	0.64	+0.3
4,784,424	-		GFF4788	0.64	-0.3
4,784,429	+		GFF4788	0.64	-0.8
4,784,432	-		GFF4788	0.64	-1.1
4,784,460	+		GFF4788	0.66	+0.1
4,784,460	+		GFF4788	0.66	-0.7
4,784,468	-		GFF4788	0.67	-0.7
4,784,483	+		GFF4788	0.68	-1.8
4,784,487	-		GFF4788	0.69	+0.3
4,784,493	+		GFF4788	0.69	-0.4
4,784,515	-		GFF4788	0.71	-0.3
4,784,557	+		GFF4788	0.74	-0.2
4,784,580	+		GFF4788	0.76	-0.2
4,784,586	+		GFF4788	0.77	-2.7
4,784,591	+		GFF4788	0.77	-0.2
4,784,591	+		GFF4788	0.77	-1.1
4,784,591	+		GFF4788	0.77	-1.0
4,784,591	+		GFF4788	0.77	-1.2
4,784,591	+		GFF4788	0.77	-0.7
4,784,591	+		GFF4788	0.77	-0.6
4,784,591	+		GFF4788	0.77	-1.8
4,784,598	+		GFF4788	0.78	-0.1
4,784,599	-		GFF4788	0.78	+0.9
4,784,599	-		GFF4788	0.78	-0.8
4,784,599	-		GFF4788	0.78	-1.1
4,784,599	-		GFF4788	0.78	-0.1
4,784,599	-		GFF4788	0.78	+0.9
4,784,601	-		GFF4788	0.78	-1.6
4,784,625	-		GFF4788	0.80	-1.1
4,784,630	+		GFF4788	0.80	-1.8
4,784,635	+		GFF4788	0.81	+0.4
4,784,635	+		GFF4788	0.81	-1.2
4,784,643	-		GFF4788	0.81	-0.1
4,784,643	-		GFF4788	0.81	+0.3
4,784,665	-		GFF4788	0.83	-0.8
4,784,673	-		GFF4788	0.84	-1.8
4,784,679	-		GFF4788	0.84	+0.9
4,784,685	-		GFF4788	0.85	-0.2
4,784,685	-		GFF4788	0.85	-1.1
4,784,692	+		GFF4788	0.85	+0.4
4,784,692	+		GFF4788	0.85	-1.8
4,784,692	+		GFF4788	0.85	-1.4
4,784,692	+		GFF4788	0.85	+0.1
4,784,700	-		GFF4788	0.86	-1.5
4,784,700	-		GFF4788	0.86	+0.1
4,784,700	-		GFF4788	0.86	-1.8
4,784,700	-		GFF4788	0.86	+0.9
4,784,700	-		GFF4788	0.86	+0.2
4,784,700	-		GFF4788	0.86	-2.6
4,784,704	-		GFF4788	0.86	-1.9
4,784,739	+		GFF4788	0.89	-0.7
4,784,745	+		GFF4788	0.89	-1.7
4,784,745	+		GFF4788	0.89	-0.3
4,784,753	-				-0.1
4,784,753	-				+0.8
4,784,753	-				-0.2
4,784,755	-				-1.5
4,784,758	-				-0.0
4,784,769	-				-1.7
4,784,805	+				+0.4
4,784,811	-				-1.2
4,784,821	+				-0.6
4,784,864	-				+1.2
4,784,899	-				-0.2
4,784,935	-				+0.9
4,784,949	+				+0.2
4,784,990	-				-0.9
4,785,004	+		GFF4789	0.13	-1.0
4,785,007	-		GFF4789	0.13	-0.0
4,785,023	-		GFF4789	0.18	-0.8
4,785,026	-		GFF4789	0.19	+0.3
4,785,054	-		GFF4789	0.27	-0.6
4,785,054	-		GFF4789	0.27	-0.4
4,785,100	+		GFF4789	0.39	+0.2
4,785,108	+		GFF4789	0.42	+0.5
4,785,108	-		GFF4789	0.42	+0.9
4,785,108	-		GFF4789	0.42	-1.8
4,785,108	-		GFF4789	0.42	-0.2
4,785,184	-		GFF4789	0.63	-0.3
4,785,195	+		GFF4789	0.66	+1.0
4,785,195	+		GFF4789	0.66	-0.7
4,785,195	+		GFF4789	0.66	-0.2
4,785,195	+		GFF4789	0.66	-0.4
4,785,195	+		GFF4789	0.66	+0.0
4,785,195	+		GFF4789	0.66	-1.1
4,785,203	-		GFF4789	0.68	-2.8
4,785,203	-		GFF4789	0.68	+0.1
4,785,203	-		GFF4789	0.68	-0.6
4,785,224	+		GFF4789	0.74	-1.1
4,785,235	+		GFF4789	0.77	-2.8
4,785,240	+		GFF4789	0.79	-0.1
4,785,248	-		GFF4789	0.81	+0.4
4,785,270	+		GFF4789	0.87	-0.6
4,785,270	+		GFF4789	0.87	-0.8
4,785,270	+		GFF4789	0.87	+0.2
4,785,270	+		GFF4789	0.87	-1.9
4,785,270	+		GFF4789	0.87	-1.8
4,785,270	+		GFF4789	0.87	+0.6
4,785,278	-		GFF4789	0.89	-1.1
4,785,278	-		GFF4789	0.89	+0.5
4,785,278	-		GFF4789	0.89	-0.6
4,785,278	-		GFF4789	0.89	-1.3
4,785,278	-		GFF4789	0.89	-2.0
4,785,278	-		GFF4789	0.89	-1.0
4,785,278	-		GFF4789	0.89	-0.4
4,785,278	-		GFF4789	0.89	-2.0
4,785,278	-		GFF4789	0.89	+0.2
4,785,278	-		GFF4789	0.89	-1.9
4,785,278	-		GFF4789	0.89	-0.5
4,785,278	-		GFF4789	0.89	-1.9
4,785,278	-		GFF4789	0.89	+0.4
4,785,278	-		GFF4789	0.89	-0.9
4,785,278	-		GFF4789	0.89	-1.7
4,785,278	-		GFF4789	0.89	+0.3
4,785,278	-		GFF4789	0.89	-2.3
4,785,278	-		GFF4789	0.89	-0.2
4,785,285	-				-0.5
4,785,304	+				-1.0
4,785,304	+				-0.7
4,785,306	+				-0.6
4,785,311	+				+0.8
4,785,312	-				-1.0
4,785,314	-				+0.2
4,785,334	-				-0.2
4,785,359	+				-0.1
4,785,368	+				-0.8
4,785,379	+				+0.3
4,785,502	+		GFF4790	0.27	-2.8
4,785,502	+		GFF4790	0.27	+1.1
4,785,502	+		GFF4790	0.27	-2.5
4,785,502	+		GFF4790	0.27	-1.6
4,785,502	+		GFF4790	0.27	+0.3
4,785,502	+		GFF4790	0.27	+0.8
4,785,502	+		GFF4790	0.27	-0.0
4,785,502	+		GFF4790	0.27	-1.9
4,785,502	+		GFF4790	0.27	-1.3
4,785,502	+		GFF4790	0.27	-1.0
4,785,502	+		GFF4790	0.27	-2.9
4,785,502	+		GFF4790	0.27	-0.9
4,785,502	+		GFF4790	0.27	-0.0
4,785,502	+		GFF4790	0.27	-0.7
4,785,502	+		GFF4790	0.27	-0.5
4,785,502	+		GFF4790	0.27	-0.8
4,785,502	+		GFF4790	0.27	+0.4
4,785,502	+		GFF4790	0.27	+0.2
4,785,510	-		GFF4790	0.28	+0.2
4,785,510	-		GFF4790	0.28	-0.4
4,785,510	-		GFF4790	0.28	-0.7
4,785,510	-		GFF4790	0.28	-0.2
4,785,510	-		GFF4790	0.28	-2.3
4,785,510	-		GFF4790	0.28	-1.3
4,785,510	-		GFF4790	0.28	+0.2
4,785,510	-		GFF4790	0.28	-1.6
4,785,516	-		GFF4790	0.30	-1.1
4,785,548	+		GFF4790	0.36	-2.1
4,785,548	+		GFF4790	0.36	-2.3
4,785,550	+		GFF4790	0.37	-1.0
4,785,552	+		GFF4790	0.37	-1.6
4,785,556	-		GFF4790	0.38	-2.1
4,785,569	-		GFF4790	0.41	+0.5
4,785,570	+		GFF4790	0.41	-1.9
4,785,570	+		GFF4790	0.41	-0.3
4,785,578	-		GFF4790	0.43	-0.2
4,785,578	-		GFF4790	0.43	-0.7
4,785,585	+		GFF4790	0.44	+0.3
4,785,590	+		GFF4790	0.45	-0.4
4,785,590	+		GFF4790	0.45	-0.5
4,785,598	-		GFF4790	0.47	-1.4
4,785,635	-		GFF4790	0.55	-1.6
4,785,638	+		GFF4790	0.55	-0.7
4,785,673	+		GFF4790	0.63	-1.6
4,785,676	-		GFF4790	0.63	+0.0
4,785,681	+		GFF4790	0.65	-0.2
4,785,681	+		GFF4790	0.65	-1.2
4,785,681	+		GFF4790	0.65	-2.2
4,785,681	+		GFF4790	0.65	-1.2
4,785,681	+		GFF4790	0.65	-0.9
4,785,681	-		GFF4790	0.65	-0.8
4,785,689	-		GFF4790	0.66	-1.8
4,785,689	-		GFF4790	0.66	+0.3
4,785,689	-		GFF4790	0.66	-2.0
4,785,691	+		GFF4790	0.67	-0.7
4,785,705	+		GFF4790	0.70	-0.3
4,785,708	-		GFF4790	0.70	-3.1
4,785,708	-		GFF4790	0.70	-1.4
4,785,713	-		GFF4790	0.71	-1.9
4,785,713	-		GFF4790	0.71	+0.8
4,785,728	+		GFF4790	0.75	-1.2
4,785,731	+		GFF4790	0.75	+0.0
4,785,731	+		GFF4790	0.75	+0.3
4,785,736	+		GFF4790	0.76	-1.6
4,785,739	-		GFF4790	0.77	-1.9
4,785,784	-		GFF4790	0.86	-2.3
4,785,784	-		GFF4790	0.86	-3.1
4,785,784	-		GFF4790	0.86	-0.4
4,785,801	-				-0.4
4,785,805	+				-0.6
4,785,805	+				-1.8
4,785,813	-				+0.5
4,785,818	+				+0.4
4,785,826	-				-1.6
4,785,830	+				-1.1
4,785,831	-				-2.2
4,785,831	-				-1.0
4,785,831	-				-0.1
4,785,831	-				-2.1
4,785,836	+				-0.7
4,785,836	-				-2.3
4,785,841	+				-2.6
4,785,844	-				-2.1
4,785,844	-				+1.3
4,785,844	-				-0.6
4,785,846	+				-0.7
4,785,848	+				-1.4
4,785,849	-				-0.1
4,785,849	-				+0.1
4,785,849	-				-1.7
4,785,855	+				-0.1
4,785,855	+				-0.7
4,785,855	+				-0.9
4,785,863	-				+0.2
4,785,863	-				+0.2
4,785,863	-				-1.2
4,785,863	-				+0.6
4,785,866	+				-1.5
4,785,867	-				+1.0
4,785,919	+				-1.7
4,785,919	+				-0.6
4,785,923	+				-0.8
4,785,954	-				-1.0
4,785,954	-				-0.8
4,785,960	-				+0.3
4,785,963	+				-1.9
4,785,968	+				-0.6
4,785,971	-				-0.2
4,785,971	-				-2.6
4,785,979	+				-1.7
4,785,979	+				-0.8
4,785,987	-				-2.5
4,785,989	+				-1.4
4,785,989	+				-0.5
4,785,989	+				-0.7
4,785,989	+				-1.2
4,785,995	-				-3.6
4,785,997	-				-0.6
4,785,997	-				-1.2
4,785,997	-				-0.9
4,785,997	-				-2.6
4,786,008	+		GFF4791	0.10	+1.1
4,786,016	-		GFF4791	0.11	-2.5
4,786,016	-		GFF4791	0.11	-0.5
4,786,016	-		GFF4791	0.11	+0.5
4,786,016	-		GFF4791	0.11	-0.6
4,786,016	-		GFF4791	0.11	+0.1
4,786,021	-		GFF4791	0.11	+0.5
4,786,057	+		GFF4791	0.14	-2.1
4,786,075	+		GFF4791	0.15	-1.5
4,786,090	-		GFF4791	0.16	-0.0
4,786,102	+		GFF4791	0.17	-1.7
4,786,107	+		GFF4791	0.17	+0.3
4,786,107	+		GFF4791	0.17	-0.6
4,786,110	+		GFF4791	0.18	+0.5
4,786,110	+		GFF4791	0.18	-1.2
4,786,110	-		GFF4791	0.18	-0.2
4,786,110	-		GFF4791	0.18	-2.0
4,786,111	-		GFF4791	0.18	-2.2
4,786,112	+		GFF4791	0.18	-2.0
4,786,112	+		GFF4791	0.18	+0.4
4,786,112	+		GFF4791	0.18	-0.9
4,786,112	+		GFF4791	0.18	-1.3
4,786,120	-		GFF4791	0.18	-0.4
4,786,120	-		GFF4791	0.18	-2.6
4,786,120	-		GFF4791	0.18	+0.2
4,786,120	-		GFF4791	0.18	-1.4
4,786,120	-		GFF4791	0.18	-0.6
4,786,120	-		GFF4791	0.18	-2.2
4,786,120	-		GFF4791	0.18	-1.8
4,786,120	-		GFF4791	0.18	-1.1
4,786,123	-		GFF4791	0.19	-0.0
4,786,123	-		GFF4791	0.19	+0.5
4,786,130	-		GFF4791	0.19	-2.0
4,786,134	-		GFF4791	0.19	-1.2
4,786,134	-		GFF4791	0.19	-1.4
4,786,143	+		GFF4791	0.20	+0.3
4,786,143	+		GFF4791	0.20	-1.7
4,786,150	+		GFF4791	0.20	+0.1
4,786,151	-		GFF4791	0.20	-1.9
4,786,153	+		GFF4791	0.21	-1.2
4,786,160	+		GFF4791	0.21	-1.0
4,786,199	+		GFF4791	0.24	+1.8
4,786,207	-		GFF4791	0.24	-0.2
4,786,207	-		GFF4791	0.24	-0.1
4,786,207	-		GFF4791	0.24	-0.8
4,786,221	+		GFF4791	0.25	-2.4
4,786,257	-		GFF4791	0.28	-0.3
4,786,267	-		GFF4791	0.29	-2.6
4,786,267	-		GFF4791	0.29	-1.1
4,786,299	-		GFF4791	0.31	-1.1
4,786,306	+		GFF4791	0.31	-0.6
4,786,308	+		GFF4791	0.31	-0.4
4,786,353	-		GFF4791	0.35	-1.1
4,786,358	-		GFF4791	0.35	-0.1
4,786,361	-		GFF4791	0.35	+0.2
4,786,363	+		GFF4791	0.35	+0.0
4,786,371	-		GFF4791	0.36	-1.8
4,786,371	-		GFF4791	0.36	-0.5
4,786,371	-		GFF4791	0.36	-2.1
4,786,375	+		GFF4791	0.36	-0.6
4,786,382	+		GFF4791	0.37	+0.1
4,786,383	-		GFF4791	0.37	-0.9
4,786,383	-		GFF4791	0.37	-0.9
4,786,383	-		GFF4791	0.37	+0.6
4,786,390	-		GFF4791	0.37	-0.7
4,786,395	-		GFF4791	0.38	+0.1
4,786,427	-		GFF4791	0.40	-0.7
4,786,470	+		GFF4791	0.43	-0.1
4,786,480	-		GFF4791	0.43	-2.5
4,786,486	-		GFF4791	0.44	-0.0
4,786,489	-		GFF4791	0.44	-2.0
4,786,496	+		GFF4791	0.45	-3.0
4,786,504	-		GFF4791	0.45	-0.2
4,786,504	-		GFF4791	0.45	-0.8
4,786,511	+		GFF4791	0.46	-0.6
4,786,511	+		GFF4791	0.46	-0.7
4,786,511	+		GFF4791	0.46	-1.0
4,786,522	+		GFF4791	0.46	-1.8
4,786,573	-		GFF4791	0.50	-1.7
4,786,573	-		GFF4791	0.50	-2.8
4,786,652	+		GFF4791	0.55	+0.0
4,786,652	+		GFF4791	0.55	-0.4
4,786,654	+		GFF4791	0.56	-1.1
4,786,660	-		GFF4791	0.56	+0.3
4,786,660	-		GFF4791	0.56	-2.9
4,786,660	-		GFF4791	0.56	-0.8
4,786,660	-		GFF4791	0.56	+0.2
4,786,664	+		GFF4791	0.56	-0.8
4,786,666	+		GFF4791	0.56	-0.5
4,786,666	+		GFF4791	0.56	+0.3
4,786,671	+		GFF4791	0.57	-2.6
4,786,673	+		GFF4791	0.57	-1.2
4,786,679	-		GFF4791	0.57	-0.9
4,786,679	-		GFF4791	0.57	-0.7
4,786,696	+		GFF4791	0.59	-1.4
4,786,727	+		GFF4791	0.61	+1.5
4,786,728	+		GFF4791	0.61	+1.4
4,786,730	-		GFF4791	0.61	+1.4
4,786,735	-		GFF4791	0.61	-1.9
4,786,735	-		GFF4791	0.61	+0.5
4,786,777	+		GFF4791	0.64	+0.1
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