Strain Fitness in Sphingobium sp. HT1-2 around GFF4787

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,780,728	+		GFF4786	0.23	+0.5
4,780,751	+		GFF4786	0.25	+0.2
4,780,751	+		GFF4786	0.25	-3.0
4,780,751	+		GFF4786	0.25	-0.2
4,780,751	+		GFF4786	0.25	+0.8
4,780,751	+		GFF4786	0.25	-2.1
4,780,751	+		GFF4786	0.25	-0.2
4,780,759	-		GFF4786	0.26	-1.0
4,780,759	-		GFF4786	0.26	+0.1
4,780,759	-		GFF4786	0.26	-1.4
4,780,759	-		GFF4786	0.26	-0.7
4,780,759	-		GFF4786	0.26	-1.0
4,780,759	-		GFF4786	0.26	+1.0
4,780,759	-		GFF4786	0.26	-2.2
4,780,759	-		GFF4786	0.26	-0.5
4,780,771	-		GFF4786	0.27	-1.4
4,780,837	+		GFF4786	0.33	-2.2
4,780,837	+		GFF4786	0.33	-0.2
4,780,837	+		GFF4786	0.33	-0.9
4,780,845	-		GFF4786	0.34	-0.3
4,780,845	-		GFF4786	0.34	-0.1
4,780,845	-		GFF4786	0.34	-0.1
4,780,845	-		GFF4786	0.34	-0.4
4,780,845	-		GFF4786	0.34	+0.3
4,780,845	-		GFF4786	0.34	-0.0
4,780,854	+		GFF4786	0.34	-0.7
4,780,854	+		GFF4786	0.34	-2.3
4,780,854	+		GFF4786	0.34	+0.3
4,780,862	-		GFF4786	0.35	+0.0
4,780,862	-		GFF4786	0.35	-1.3
4,780,862	-		GFF4786	0.35	-0.7
4,780,862	-		GFF4786	0.35	+0.6
4,780,862	-		GFF4786	0.35	+0.1
4,780,875	+		GFF4786	0.36	-0.9
4,780,875	+		GFF4786	0.36	+0.2
4,780,875	+		GFF4786	0.36	-0.2
4,780,880	+		GFF4786	0.37	+0.2
4,780,883	-		GFF4786	0.37	-3.0
4,780,890	-		GFF4786	0.37	-2.4
4,780,892	+		GFF4786	0.38	+0.7
4,780,892	-		GFF4786	0.38	+1.3
4,780,902	+		GFF4786	0.39	+1.1
4,780,926	-		GFF4786	0.41	+0.0
4,780,931	-		GFF4786	0.41	-0.4
4,780,931	-		GFF4786	0.41	-1.8
4,780,931	-		GFF4786	0.41	+0.1
4,780,961	+		GFF4786	0.44	-0.0
4,780,962	+		GFF4786	0.44	-1.7
4,780,974	-		GFF4786	0.45	-2.1
4,780,982	+		GFF4786	0.45	-2.7
4,780,982	+		GFF4786	0.45	-0.9
4,780,982	+		GFF4786	0.45	-0.1
4,780,990	-		GFF4786	0.46	-2.2
4,781,000	+		GFF4786	0.47	-2.0
4,781,007	-		GFF4786	0.48	-0.7
4,781,009	+		GFF4786	0.48	-1.5
4,781,017	+		GFF4786	0.48	-0.4
4,781,017	-		GFF4786	0.48	-0.8
4,781,025	-		GFF4786	0.49	-2.2
4,781,031	+		GFF4786	0.50	-0.9
4,781,039	-		GFF4786	0.50	+0.1
4,781,039	-		GFF4786	0.50	-0.1
4,781,039	-		GFF4786	0.50	-2.2
4,781,057	+		GFF4786	0.52	-0.7
4,781,065	+		GFF4786	0.53	-1.3
4,781,073	-		GFF4786	0.53	-1.0
4,781,073	-		GFF4786	0.53	-0.7
4,781,073	-		GFF4786	0.53	-0.4
4,781,113	+		GFF4786	0.57	-3.3
4,781,120	+		GFF4786	0.57	+0.2
4,781,130	+		GFF4786	0.58	+0.1
4,781,130	+		GFF4786	0.58	-2.1
4,781,140	+		GFF4786	0.59	-2.3
4,781,148	-		GFF4786	0.60	-1.4
4,781,168	+		GFF4786	0.62	-1.7
4,781,181	-		GFF4786	0.63	-0.2
4,781,187	+		GFF4786	0.63	-0.8
4,781,195	-		GFF4786	0.64	-0.2
4,781,209	+		GFF4786	0.65	-0.8
4,781,217	-		GFF4786	0.66	+0.3
4,781,219	+		GFF4786	0.66	-2.5
4,781,221	-		GFF4786	0.66	-1.0
4,781,235	+		GFF4786	0.67	-0.1
4,781,235	+		GFF4786	0.67	-3.2
4,781,235	-		GFF4786	0.67	-0.1
4,781,243	+		GFF4786	0.68	-1.8
4,781,243	-		GFF4786	0.68	+0.0
4,781,254	+		GFF4786	0.69	-2.2
4,781,254	+		GFF4786	0.69	-0.3
4,781,259	+		GFF4786	0.69	-0.7
4,781,261	+		GFF4786	0.70	-1.3
4,781,261	+		GFF4786	0.70	-1.5
4,781,269	-		GFF4786	0.70	-1.6
4,781,269	-		GFF4786	0.70	-1.2
4,781,275	+		GFF4786	0.71	-1.0
4,781,293	-		GFF4786	0.72	-2.0
4,781,298	-		GFF4786	0.73	-0.5
4,781,298	-		GFF4786	0.73	-2.0
4,781,307	+		GFF4786	0.74	+0.8
4,781,309	-		GFF4786	0.74	-0.9
4,781,315	-		GFF4786	0.74	-0.6
4,781,327	-		GFF4786	0.75	-1.4
4,781,344	+		GFF4786	0.77	-0.5
4,781,346	+		GFF4786	0.77	-2.0
4,781,346	+		GFF4786	0.77	-1.6
4,781,346	+		GFF4786	0.77	-0.6
4,781,346	+		GFF4786	0.77	+0.5
4,781,346	+		GFF4786	0.77	-0.7
4,781,346	+		GFF4786	0.77	-0.7
4,781,352	-		GFF4786	0.77	-1.6
4,781,354	-		GFF4786	0.78	-2.2
4,781,354	-		GFF4786	0.78	-1.9
4,781,354	-		GFF4786	0.78	+0.9
4,781,354	-		GFF4786	0.78	-3.3
4,781,354	-		GFF4786	0.78	-0.1
4,781,354	-		GFF4786	0.78	-0.9
4,781,354	-		GFF4786	0.78	-1.4
4,781,354	-		GFF4786	0.78	-2.5
4,781,354	-		GFF4786	0.78	-0.7
4,781,356	-		GFF4786	0.78	+0.2
4,781,371	-		GFF4786	0.79	-0.1
4,781,379	-		GFF4786	0.80	-1.8
4,781,403	+		GFF4786	0.82	+0.2
4,781,410	+		GFF4786	0.83	-0.2
4,781,413	-		GFF4786	0.83	-2.1
4,781,463	-		GFF4786	0.87	-0.2
4,781,469	-		GFF4786	0.88	-2.1
4,781,480	+		GFF4786	0.89	-0.0
4,781,490	+		GFF4786	0.89	+0.7
4,781,495	+		GFF4786	0.90	-1.3
4,781,500	+				-0.7
4,781,500	+				-1.0
4,781,508	-				-1.8
4,781,508	-				-0.3
4,781,508	-				-0.9
4,781,508	-				-0.8
4,781,508	-				+0.6
4,781,539	-				+0.2
4,781,554	+				-0.7
4,781,616	+				-1.9
4,781,624	-				-0.2
4,781,632	-				-0.5
4,781,634	+				-0.9
4,781,634	+				-0.7
4,781,634	+				+0.7
4,781,634	+				-0.4
4,781,634	+				+1.2
4,781,642	-				-2.1
4,781,642	-				+0.7
4,781,659	-				-1.3
4,781,671	+				-1.1
4,781,671	+				-0.6
4,781,679	-				-0.8
4,781,685	+				-0.2
4,781,717	+				-0.6
4,781,717	+				+1.0
4,781,722	+				-1.2
4,781,724	-				-0.7
4,781,730	-				+0.6
4,781,749	-				-0.7
4,781,769	+				-0.2
4,781,780	+				-0.1
4,781,799	+				-0.1
4,781,807	+				+0.6
4,781,807	-				-1.5
4,781,815	-				-1.2
4,781,817	-				-2.6
4,781,819	+				+0.7
4,781,841	+				-1.2
4,781,844	-				+1.0
4,781,846	+				-0.5
4,781,852	+				-0.7
4,781,852	+				+0.9
4,781,852	+				-2.8
4,781,852	+				-1.4
4,781,852	+				-0.2
4,781,855	-				-1.6
4,781,860	-				-0.8
4,781,860	-				-1.7
4,781,860	-				+0.2
4,781,860	-				-1.4
4,781,860	-				-0.7
4,781,860	-				+1.0
4,781,882	+				+0.3
4,781,882	+				-0.5
4,781,898	+				-3.6
4,781,927	+		GFF4787	0.11	-1.8
4,781,927	+		GFF4787	0.11	-0.8
4,781,927	+		GFF4787	0.11	-1.1
4,781,927	+		GFF4787	0.11	-0.1
4,781,927	+		GFF4787	0.11	-0.6
4,781,927	+		GFF4787	0.11	-0.3
4,781,927	+		GFF4787	0.11	-1.9
4,781,927	+		GFF4787	0.11	+1.6
4,781,927	+		GFF4787	0.11	-0.4
4,781,927	+		GFF4787	0.11	+0.7
4,781,927	+		GFF4787	0.11	-0.4
4,781,927	+		GFF4787	0.11	-1.0
4,781,927	+		GFF4787	0.11	-0.1
4,781,927	+		GFF4787	0.11	-2.9
4,781,927	+		GFF4787	0.11	-0.1
4,781,927	+		GFF4787	0.11	-1.1
4,781,927	+		GFF4787	0.11	-1.0
4,781,932	+		GFF4787	0.11	-0.8
4,781,932	+		GFF4787	0.11	-1.0
4,781,932	+		GFF4787	0.11	-2.0
4,781,935	-		GFF4787	0.11	+0.4
4,781,935	-		GFF4787	0.11	-1.1
4,781,935	-		GFF4787	0.11	+0.3
4,781,935	-		GFF4787	0.11	-0.6
4,781,935	-		GFF4787	0.11	+0.3
4,781,935	-		GFF4787	0.11	-1.8
4,781,935	-		GFF4787	0.11	-0.2
4,781,935	-		GFF4787	0.11	-1.6
4,781,935	-		GFF4787	0.11	-2.9
4,781,935	-		GFF4787	0.11	-0.8
4,781,935	-		GFF4787	0.11	-0.5
4,781,935	-		GFF4787	0.11	-1.2
4,781,935	-		GFF4787	0.11	-0.9
4,781,935	-		GFF4787	0.11	-0.6
4,781,935	-		GFF4787	0.11	-0.2
4,781,935	-		GFF4787	0.11	-1.0
4,781,935	-		GFF4787	0.11	-1.8
4,781,935	-		GFF4787	0.11	-2.6
4,781,935	-		GFF4787	0.11	-0.9
4,781,935	-		GFF4787	0.11	-1.0
4,781,935	-		GFF4787	0.11	+0.4
4,781,962	-		GFF4787	0.13	-0.4
4,781,964	-		GFF4787	0.13	-1.6
4,781,972	+		GFF4787	0.13	-1.4
4,781,973	+		GFF4787	0.13	-1.8
4,781,973	+		GFF4787	0.13	+0.8
4,781,973	+		GFF4787	0.13	-0.6
4,781,978	+		GFF4787	0.13	-1.1
4,781,981	-		GFF4787	0.14	-0.2
4,781,981	-		GFF4787	0.14	-0.6
4,781,981	-		GFF4787	0.14	-1.7
4,781,981	-		GFF4787	0.14	-1.0
4,781,983	+		GFF4787	0.14	-1.3
4,782,011	+		GFF4787	0.15	+0.4
4,782,014	+		GFF4787	0.15	-0.8
4,782,019	+		GFF4787	0.16	-1.1
4,782,019	+		GFF4787	0.16	-1.7
4,782,019	+		GFF4787	0.16	+0.4
4,782,019	+		GFF4787	0.16	-0.4
4,782,019	+		GFF4787	0.16	-2.1
4,782,019	+		GFF4787	0.16	-0.7
4,782,019	+		GFF4787	0.16	-1.2
4,782,019	+		GFF4787	0.16	+0.0
4,782,019	+		GFF4787	0.16	-0.7
4,782,019	+		GFF4787	0.16	-0.2
4,782,019	+		GFF4787	0.16	-1.7
4,782,019	+		GFF4787	0.16	-0.5
4,782,019	+		GFF4787	0.16	-1.5
4,782,019	+		GFF4787	0.16	+0.4
4,782,019	-		GFF4787	0.16	+0.1
4,782,024	+		GFF4787	0.16	-0.5
4,782,024	+		GFF4787	0.16	-0.5
4,782,024	+		GFF4787	0.16	-0.1
4,782,024	+		GFF4787	0.16	+0.3
4,782,024	+		GFF4787	0.16	-0.6
4,782,024	+		GFF4787	0.16	+0.1
4,782,027	-		GFF4787	0.16	-0.9
4,782,027	-		GFF4787	0.16	-0.9
4,782,027	-		GFF4787	0.16	-0.8
4,782,027	-		GFF4787	0.16	-1.0
4,782,027	-		GFF4787	0.16	-1.6
4,782,027	-		GFF4787	0.16	+0.1
4,782,027	-		GFF4787	0.16	-2.4
4,782,027	-		GFF4787	0.16	+0.4
4,782,027	-		GFF4787	0.16	+1.3
4,782,027	-		GFF4787	0.16	-0.9
4,782,027	-		GFF4787	0.16	+0.2
4,782,027	-		GFF4787	0.16	+0.6
4,782,027	-		GFF4787	0.16	-1.0
4,782,027	-		GFF4787	0.16	-0.2
4,782,032	-		GFF4787	0.16	+0.4
4,782,032	-		GFF4787	0.16	-0.5
4,782,032	-		GFF4787	0.16	-1.1
4,782,037	-		GFF4787	0.17	-1.3
4,782,039	+		GFF4787	0.17	-1.8
4,782,087	-		GFF4787	0.19	-2.2
4,782,087	-		GFF4787	0.19	-1.3
4,782,087	-		GFF4787	0.19	-0.2
4,782,088	+		GFF4787	0.19	-0.7
4,782,088	+		GFF4787	0.19	-1.9
4,782,101	+		GFF4787	0.20	-0.6
4,782,101	+		GFF4787	0.20	-0.6
4,782,101	+		GFF4787	0.20	-1.2
4,782,104	-		GFF4787	0.20	-0.6
4,782,109	-		GFF4787	0.20	-0.9
4,782,109	-		GFF4787	0.20	+0.0
4,782,109	-		GFF4787	0.20	+0.5
4,782,114	-		GFF4787	0.21	-0.8
4,782,149	+		GFF4787	0.23	-1.8
4,782,151	-		GFF4787	0.23	+0.2
4,782,155	+		GFF4787	0.23	-0.6
4,782,180	+		GFF4787	0.24	-1.3
4,782,184	+		GFF4787	0.24	+0.7
4,782,193	+		GFF4787	0.25	+0.8
4,782,194	+		GFF4787	0.25	+0.9
4,782,202	-		GFF4787	0.25	+0.2
4,782,217	-		GFF4787	0.26	-1.8
4,782,228	+		GFF4787	0.27	-1.7
4,782,233	+		GFF4787	0.27	-0.4
4,782,233	+		GFF4787	0.27	-1.1
4,782,235	+		GFF4787	0.27	+0.4
4,782,236	-		GFF4787	0.27	-0.1
4,782,236	-		GFF4787	0.27	-1.4
4,782,241	-		GFF4787	0.28	-1.2
4,782,241	-		GFF4787	0.28	-1.4
4,782,241	-		GFF4787	0.28	-0.7
4,782,243	-		GFF4787	0.28	+1.1
4,782,247	+		GFF4787	0.28	-1.6
4,782,254	+		GFF4787	0.28	-1.9
4,782,257	+		GFF4787	0.28	-1.1
4,782,257	+		GFF4787	0.28	+0.9
4,782,261	+		GFF4787	0.29	-1.2
4,782,272	+		GFF4787	0.29	+0.2
4,782,272	+		GFF4787	0.29	+0.3
4,782,272	+		GFF4787	0.29	+0.1
4,782,280	-		GFF4787	0.30	-1.3
4,782,289	+		GFF4787	0.30	-2.8
4,782,292	-		GFF4787	0.30	-2.0
4,782,294	+		GFF4787	0.30	-1.2
4,782,294	+		GFF4787	0.30	-1.9
4,782,294	+		GFF4787	0.30	-1.8
4,782,294	+		GFF4787	0.30	-1.9
4,782,295	+		GFF4787	0.30	-1.6
4,782,302	-		GFF4787	0.31	-1.8
4,782,302	-		GFF4787	0.31	-1.8
4,782,311	+		GFF4787	0.31	-1.5
4,782,311	+		GFF4787	0.31	-0.8
4,782,311	+		GFF4787	0.31	-1.4
4,782,311	+		GFF4787	0.31	-0.9
4,782,321	+		GFF4787	0.32	-0.6
4,782,321	+		GFF4787	0.32	-0.4
4,782,329	-		GFF4787	0.32	-1.8
4,782,329	-		GFF4787	0.32	+0.9
4,782,329	-		GFF4787	0.32	-0.4
4,782,370	+		GFF4787	0.34	-0.2
4,782,393	+		GFF4787	0.36	-0.3
4,782,393	+		GFF4787	0.36	-0.2
4,782,401	+		GFF4787	0.36	-0.1
4,782,401	+		GFF4787	0.36	-0.2
4,782,401	-		GFF4787	0.36	+0.3
4,782,401	-		GFF4787	0.36	-1.8
4,782,403	+		GFF4787	0.36	-1.1
4,782,406	+		GFF4787	0.36	-2.2
4,782,406	+		GFF4787	0.36	-0.6
4,782,406	+		GFF4787	0.36	+0.0
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4,782,575	-		GFF4787	0.45	-1.1
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4,782,701	-		GFF4787	0.52	-0.9
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4,782,720	-		GFF4787	0.53	-2.1
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4,782,777	+		GFF4787	0.56	+0.8
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4,782,820	-		GFF4787	0.59	-1.3
4,782,820	-		GFF4787	0.59	-3.1
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4,782,995	-		GFF4787	0.68	-1.8
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4,782,998	+		GFF4787	0.68	+0.9
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4,783,029	+		GFF4787	0.70	-0.2
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4,783,035	+		GFF4787	0.70	-1.0
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4,783,043	-		GFF4787	0.71	-0.1
4,783,043	-		GFF4787	0.71	-1.8
4,783,043	-		GFF4787	0.71	-0.3
4,783,045	-		GFF4787	0.71	-1.8
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4,783,050	-		GFF4787	0.71	-0.2
4,783,050	-		GFF4787	0.71	+0.1
4,783,050	-		GFF4787	0.71	-1.1
4,783,050	-		GFF4787	0.71	-2.0
4,783,050	-		GFF4787	0.71	+0.2
4,783,050	-		GFF4787	0.71	-0.2
4,783,060	+		GFF4787	0.71	-0.1
4,783,060	+		GFF4787	0.71	-1.9
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4,783,114	+		GFF4787	0.74	-0.5
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4,783,119	+		GFF4787	0.75	-0.5
4,783,119	+		GFF4787	0.75	-1.5
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4,783,122	-		GFF4787	0.75	-0.6
4,783,122	-		GFF4787	0.75	-1.1
4,783,122	-		GFF4787	0.75	-0.1
4,783,122	-		GFF4787	0.75	-1.5
4,783,122	-		GFF4787	0.75	-0.4
4,783,122	-		GFF4787	0.75	+0.7
4,783,122	-		GFF4787	0.75	-2.1
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4,783,141	-		GFF4787	0.76	-0.7
4,783,149	+		GFF4787	0.76	-1.4
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4,783,193	+		GFF4787	0.79	-0.7
4,783,193	+		GFF4787	0.79	-0.5
4,783,193	+		GFF4787	0.79	+0.4
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4,783,201	-		GFF4787	0.79	-1.8
4,783,201	-		GFF4787	0.79	-0.9
4,783,201	-		GFF4787	0.79	-1.0
4,783,201	-		GFF4787	0.79	-0.2
4,783,203	+		GFF4787	0.79	-1.5
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4,783,219	+		GFF4787	0.80	-1.3
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4,783,243	+		GFF4787	0.81	-1.1
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4,783,298	-		GFF4787	0.84	-2.3
4,783,298	-		GFF4787	0.84	-1.9
4,783,298	-		GFF4787	0.84	-1.1
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4,783,298	-		GFF4787	0.84	+0.0
4,783,298	-		GFF4787	0.84	-0.7
4,783,298	-		GFF4787	0.84	-0.7
4,783,298	-		GFF4787	0.84	-2.9
4,783,298	-		GFF4787	0.84	-0.3
4,783,302	+		GFF4787	0.84	-2.9
4,783,302	+		GFF4787	0.84	-0.5
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4,783,365	+		GFF4787	0.88	+0.4
4,783,365	+		GFF4787	0.88	+0.2
4,783,373	-		GFF4787	0.88	-3.7
4,783,389	-		GFF4787	0.89	-0.7
4,783,399	-		GFF4787	0.90	-0.9
4,783,408	-				-1.1
4,783,408	-				+1.6
4,783,408	-				+0.2
4,783,410	+				-0.2
4,783,427	-				-0.3
4,783,433	+				-1.3
4,783,433	+				+0.6
4,783,441	-				-1.1
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4,783,449	+				-0.2
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4,783,450	+				+0.2
4,783,457	+				-0.9
4,783,457	-				-1.7
4,783,457	-				-0.2
4,783,458	-				-0.7
4,783,458	-				-0.1
4,783,458	-				-0.2
4,783,465	-				+0.3
4,783,469	+				+0.1
4,783,470	-				+0.3
4,783,470	-				-1.0
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4,783,483	+				-0.2
4,783,493	-				+0.2
4,783,499	-				-1.0
4,783,523	-				+0.2
4,783,529	-				-1.1
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4,783,535	+				-0.9
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4,783,543	-				-0.2
4,783,543	-				+0.3
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4,783,592	-				-0.8
4,783,651	+				-0.1
4,783,709	+				-0.1
4,783,735	-				-1.8
4,783,735	-				-0.5
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4,783,747	+				-2.1
4,783,752	+				+0.8
4,783,755	-				+0.9
4,783,764	+		GFF4788	0.10	-1.1
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4,783,772	-		GFF4788	0.11	-3.6
4,783,804	+		GFF4788	0.14	-0.8
4,783,814	+		GFF4788	0.14	-1.4
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4,783,850	-		GFF4788	0.17	-0.9
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4,783,999	+		GFF4788	0.29	-0.5
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