Strain Fitness in Sphingobium sp. HT1-2 around GFF4764

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,760,105	+				-0.8
4,760,110	+				-1.6
4,760,110	+				-1.5
4,760,110	+				-0.4
4,760,111	+				+0.5
4,760,111	+				-2.3
4,760,118	-				-0.2
4,760,118	-				-1.7
4,760,119	-				-0.0
4,760,119	-				-0.7
4,760,119	-				-2.6
4,760,119	-				-1.0
4,760,124	-				-0.2
4,760,129	+				+0.4
4,760,139	+				+0.4
4,760,141	-				-1.0
4,760,141	-				-0.8
4,760,148	+				-0.2
4,760,155	-				-2.2
4,760,183	+				+0.3
4,760,188	+				-0.1
4,760,196	+				-1.0
4,760,196	-				+0.3
4,760,201	-				-0.3
4,760,225	+				+0.5
4,760,225	+				-1.5
4,760,225	+				-0.1
4,760,239	+				-0.2
4,760,256	-		GFF4763	0.11	-0.8
4,760,257	-		GFF4763	0.11	-0.3
4,760,258	+		GFF4763	0.11	-0.1
4,760,269	+		GFF4763	0.12	-1.0
4,760,294	+		GFF4763	0.15	-0.4
4,760,302	+		GFF4763	0.16	+0.8
4,760,302	+		GFF4763	0.16	-1.0
4,760,302	+		GFF4763	0.16	-0.5
4,760,304	+		GFF4763	0.16	+0.1
4,760,305	-		GFF4763	0.16	+0.2
4,760,310	-		GFF4763	0.17	-2.2
4,760,310	-		GFF4763	0.17	-0.6
4,760,312	-		GFF4763	0.17	+0.2
4,760,323	+		GFF4763	0.18	-0.1
4,760,389	+		GFF4763	0.26	-2.5
4,760,431	+		GFF4763	0.31	-0.5
4,760,472	+		GFF4763	0.36	+0.1
4,760,480	-		GFF4763	0.36	-1.1
4,760,493	+		GFF4763	0.38	+0.2
4,760,549	+		GFF4763	0.44	-0.5
4,760,562	-		GFF4763	0.46	+1.1
4,760,595	+		GFF4763	0.50	-0.7
4,760,595	+		GFF4763	0.50	-2.0
4,760,603	-		GFF4763	0.51	-0.9
4,760,623	+		GFF4763	0.53	-2.9
4,760,623	+		GFF4763	0.53	-2.2
4,760,623	+		GFF4763	0.53	-1.9
4,760,631	-		GFF4763	0.54	-1.9
4,760,631	-		GFF4763	0.54	-1.2
4,760,646	+		GFF4763	0.56	-1.0
4,760,660	+		GFF4763	0.57	-2.9
4,760,666	+		GFF4763	0.58	-2.0
4,760,669	+		GFF4763	0.58	-1.6
4,760,674	+		GFF4763	0.59	+0.6
4,760,677	-		GFF4763	0.59	+0.3
4,760,677	-		GFF4763	0.59	-0.1
4,760,682	-		GFF4763	0.60	-0.8
4,760,682	-		GFF4763	0.60	-1.6
4,760,695	-		GFF4763	0.61	-0.3
4,760,700	-		GFF4763	0.62	+0.5
4,760,747	+		GFF4763	0.67	+0.6
4,760,768	+		GFF4763	0.70	-1.6
4,760,776	-		GFF4763	0.70	-1.0
4,760,811	-		GFF4763	0.74	+0.2
4,760,842	+		GFF4763	0.78	-0.1
4,760,847	+		GFF4763	0.79	-1.6
4,760,852	+		GFF4763	0.79	-1.1
4,760,860	-		GFF4763	0.80	-1.0
4,760,921	+		GFF4763	0.87	-1.2
4,760,938	-		GFF4763	0.89	-0.7
4,760,944	+		GFF4763	0.90	-2.9
4,760,952	+				+0.8
4,760,953	+				-0.2
4,760,954	+				-0.2
4,760,960	+				-0.8
4,760,982	+				-1.9
4,760,987	+				+0.6
4,760,990	-				+0.4
4,760,995	-				-2.0
4,760,995	-				+0.2
4,761,001	-				-0.1
4,761,003	+				-2.0
4,761,011	-				+0.6
4,761,011	-				-1.3
4,761,019	+				-0.5
4,761,026	+				-0.9
4,761,026	+				+0.6
4,761,026	+				-1.6
4,761,027	-				-0.8
4,761,063	+				-0.6
4,761,071	-				-2.5
4,761,071	-				+0.3
4,761,080	-				-0.8
4,761,122	+				-2.7
4,761,129	+				-0.6
4,761,129	+				-2.6
4,761,138	+				-1.7
4,761,141	+				-2.4
4,761,156	-				-0.6
4,761,156	-				-0.9
4,761,176	-				-2.6
4,761,180	+				-2.0
4,761,188	-				-4.3
4,761,188	-				-2.9
4,761,232	-		GFF4764	0.10	-0.9
4,761,239	-		GFF4764	0.11	-2.5
4,761,277	-		GFF4764	0.14	-1.7
4,761,289	-		GFF4764	0.14	-2.5
4,761,324	-		GFF4764	0.17	-2.4
4,761,324	-		GFF4764	0.17	-0.3
4,761,332	-		GFF4764	0.18	-1.4
4,761,362	+		GFF4764	0.20	-2.0
4,761,388	-		GFF4764	0.22	-1.3
4,761,388	-		GFF4764	0.22	-1.7
4,761,393	+		GFF4764	0.22	-2.3
4,761,393	+		GFF4764	0.22	-0.2
4,761,393	+		GFF4764	0.22	-2.5
4,761,410	+		GFF4764	0.23	+0.2
4,761,411	+		GFF4764	0.23	-2.0
4,761,411	-		GFF4764	0.23	-0.5
4,761,416	-		GFF4764	0.24	-2.6
4,761,416	-		GFF4764	0.24	-3.2
4,761,437	-		GFF4764	0.25	-2.7
4,761,439	+		GFF4764	0.25	-1.9
4,761,441	+		GFF4764	0.25	-0.8
4,761,442	-		GFF4764	0.25	-1.1
4,761,447	-		GFF4764	0.26	-2.0
4,761,449	-		GFF4764	0.26	-1.9
4,761,452	+		GFF4764	0.26	-2.6
4,761,469	+		GFF4764	0.27	-3.0
4,761,477	-		GFF4764	0.28	-0.5
4,761,493	-		GFF4764	0.29	-3.3
4,761,494	-		GFF4764	0.29	-1.9
4,761,496	+		GFF4764	0.29	-3.0
4,761,519	+		GFF4764	0.31	-0.4
4,761,551	+		GFF4764	0.33	-2.5
4,761,567	-		GFF4764	0.34	-2.1
4,761,567	-		GFF4764	0.34	-2.1
4,761,588	+		GFF4764	0.36	-1.6
4,761,588	+		GFF4764	0.36	-2.8
4,761,588	+		GFF4764	0.36	-2.1
4,761,588	+		GFF4764	0.36	-2.2
4,761,596	-		GFF4764	0.36	-1.2
4,761,596	-		GFF4764	0.36	-1.9
4,761,596	-		GFF4764	0.36	-3.7
4,761,596	-		GFF4764	0.36	-2.0
4,761,596	-		GFF4764	0.36	-3.8
4,761,598	+		GFF4764	0.37	-2.2
4,761,598	+		GFF4764	0.37	-1.4
4,761,598	+		GFF4764	0.37	-1.9
4,761,606	-		GFF4764	0.37	-2.4
4,761,619	-		GFF4764	0.38	-1.5
4,761,634	-		GFF4764	0.39	-2.5
4,761,644	-		GFF4764	0.40	-2.4
4,761,644	-		GFF4764	0.40	-2.0
4,761,644	-		GFF4764	0.40	-3.2
4,761,644	-		GFF4764	0.40	-3.1
4,761,699	-		GFF4764	0.44	-2.8
4,761,701	+		GFF4764	0.44	-0.5
4,761,772	-		GFF4764	0.49	-1.9
4,761,814	-		GFF4764	0.52	-1.0
4,761,827	+		GFF4764	0.53	-3.1
4,761,850	-		GFF4764	0.55	-0.8
4,761,852	+		GFF4764	0.55	-1.8
4,761,875	-		GFF4764	0.56	-2.0
4,761,875	-		GFF4764	0.56	-1.8
4,761,879	+		GFF4764	0.57	-2.3
4,761,887	-		GFF4764	0.57	-2.3
4,761,898	-		GFF4764	0.58	-2.2
4,761,911	+		GFF4764	0.59	-3.0
4,761,926	+		GFF4764	0.60	-1.8
4,761,926	+		GFF4764	0.60	-2.1
4,761,926	+		GFF4764	0.60	-1.7
4,761,926	+		GFF4764	0.60	-2.3
4,761,926	+		GFF4764	0.60	-1.7
4,761,926	+		GFF4764	0.60	-3.5
4,761,926	+		GFF4764	0.60	-1.9
4,761,932	-		GFF4764	0.60	-2.1
4,761,934	-		GFF4764	0.61	-3.2
4,761,942	-		GFF4764	0.61	-1.7
4,762,015	-		GFF4764	0.66	-2.8
4,762,063	-		GFF4764	0.70	-2.9
4,762,064	-		GFF4764	0.70	-2.7
4,762,082	+		GFF4764	0.71	-2.1
4,762,082	+		GFF4764	0.71	-2.1
4,762,082	+		GFF4764	0.71	-2.6
4,762,082	+		GFF4764	0.71	-0.4
4,762,090	-		GFF4764	0.72	-3.4
4,762,104	+		GFF4764	0.73	-2.4
4,762,104	+		GFF4764	0.73	-3.2
4,762,104	+		GFF4764	0.73	-2.6
4,762,112	-		GFF4764	0.73	-0.9
4,762,143	-		GFF4764	0.75	-1.7
4,762,157	+		GFF4764	0.76	-3.1
4,762,163	+		GFF4764	0.77	-2.3
4,762,170	+		GFF4764	0.77	-0.7
4,762,170	+		GFF4764	0.77	-1.9
4,762,171	-		GFF4764	0.77	-2.3
4,762,171	-		GFF4764	0.77	-2.6
4,762,171	-		GFF4764	0.77	-0.3
4,762,178	-		GFF4764	0.78	-3.1
4,762,183	+		GFF4764	0.78	-1.7
4,762,203	-		GFF4764	0.80	-2.7
4,762,210	+		GFF4764	0.80	-2.4
4,762,214	-		GFF4764	0.81	-3.8
4,762,214	-		GFF4764	0.81	-2.5
4,762,236	-		GFF4764	0.82	-3.7
4,762,236	-		GFF4764	0.82	-2.9
4,762,236	-		GFF4764	0.82	-1.7
4,762,238	+		GFF4764	0.82	-2.0
4,762,246	-		GFF4764	0.83	-2.3
4,762,257	+		GFF4764	0.84	-2.3
4,762,257	+		GFF4764	0.84	-2.3
4,762,257	+		GFF4764	0.84	-1.2
4,762,257	-		GFF4764	0.84	-2.2
4,762,265	+		GFF4764	0.84	-1.9
4,762,273	+		GFF4764	0.85	-1.7
4,762,273	+		GFF4764	0.85	-2.2
4,762,273	+		GFF4764	0.85	-2.3
4,762,281	-		GFF4764	0.85	-1.7
4,762,288	+		GFF4764	0.86	-2.3
4,762,325	+		GFF4764	0.88	-2.2
4,762,337	+		GFF4764	0.89	-2.0
4,762,345	-		GFF4764	0.90	-2.9
4,762,345	-		GFF4764	0.90	-1.7
4,762,393	-				-1.9
4,762,404	-				-1.7
4,762,415	+				-1.9
4,762,429	+				-1.9
4,762,437	-				-2.2
4,762,438	+				-2.1
4,762,438	+				-1.6
4,762,445	+				-2.4
4,762,446	-				-3.0
4,762,453	-				-2.4
4,762,469	+				-2.7
4,762,473	-				-1.5
4,762,504	-				-0.7
4,762,519	-				-3.4
4,762,529	+				-0.3
4,762,529	-				-1.9
4,762,538	+				-1.7
4,762,538	+				-0.6
4,762,556	-				-0.5
4,762,564	+				-2.2
4,762,577	-				+0.2
4,762,620	-		GFF4765	0.14	-3.1
4,762,622	+		GFF4765	0.14	-1.8
4,762,630	-		GFF4765	0.15	-1.2
4,762,655	+		GFF4765	0.19	-0.1
4,762,655	+		GFF4765	0.19	-0.4
4,762,655	+		GFF4765	0.19	-1.4
4,762,655	+		GFF4765	0.19	-0.5
4,762,655	-		GFF4765	0.19	+0.5
4,762,657	+		GFF4765	0.20	-0.5
4,762,663	-		GFF4765	0.21	-2.5
4,762,663	-		GFF4765	0.21	-1.0
4,762,663	-		GFF4765	0.21	-0.5
4,762,663	-		GFF4765	0.21	-0.7
4,762,665	+		GFF4765	0.21	-2.8
4,762,665	+		GFF4765	0.21	-1.5
4,762,673	-		GFF4765	0.22	-2.3
4,762,684	+		GFF4765	0.24	+1.1
4,762,722	+		GFF4765	0.30	+0.3
4,762,726	+		GFF4765	0.30	-1.6
4,762,727	+		GFF4765	0.31	-1.3
4,762,727	+		GFF4765	0.31	-0.4
4,762,727	+		GFF4765	0.31	+0.1
4,762,727	+		GFF4765	0.31	-1.8
4,762,727	+		GFF4765	0.31	+0.2
4,762,727	+		GFF4765	0.31	-1.6
4,762,727	+		GFF4765	0.31	-0.8
4,762,727	+		GFF4765	0.31	-2.8
4,762,727	+		GFF4765	0.31	-1.6
4,762,727	+		GFF4765	0.31	-1.1
4,762,735	-		GFF4765	0.32	+0.2
4,762,735	-		GFF4765	0.32	-1.1
4,762,735	-		GFF4765	0.32	+0.4
4,762,735	-		GFF4765	0.32	-1.6
4,762,735	-		GFF4765	0.32	-0.4
4,762,735	-		GFF4765	0.32	-0.1
4,762,810	-		GFF4765	0.43	-0.8
4,762,874	+		GFF4765	0.53	-0.3
4,762,882	-		GFF4765	0.55	-1.1
4,762,901	-		GFF4765	0.58	-2.9
4,762,928	+		GFF4765	0.62	-0.7
4,762,928	+		GFF4765	0.62	-1.0
4,762,957	+		GFF4765	0.66	-0.2
4,762,966	-		GFF4765	0.68	-1.9
4,762,973	+		GFF4765	0.69	-0.5
4,762,978	+		GFF4765	0.70	-0.6
4,762,978	+		GFF4765	0.70	-1.8
4,762,978	+		GFF4765	0.70	-0.6
4,762,978	+		GFF4765	0.70	-2.9
4,762,978	+		GFF4765	0.70	-1.9
4,762,986	-		GFF4765	0.71	-1.0
4,762,987	-		GFF4765	0.71	-0.8
4,763,017	+		GFF4765	0.76	-2.1
4,763,017	+		GFF4765	0.76	+0.1
4,763,017	+		GFF4765	0.76	-1.8
4,763,025	-		GFF4765	0.77	-0.4
4,763,037	+		GFF4765	0.79	-0.6
4,763,081	-		GFF4765	0.86	-0.6
4,763,099	-		GFF4765	0.88	-3.1
4,763,107	+		GFF4765	0.90	-1.1
4,763,115	-				-0.9
4,763,118	-				-1.2
4,763,134	-				-1.7
4,763,139	-				-0.8
4,763,140	+				-1.2
4,763,140	+				+0.7
4,763,140	+				-0.0
4,763,140	+				-1.5
4,763,148	-				+0.0
4,763,190	+				+0.1
4,763,193	-				-0.6
4,763,219	+		GFF4766	0.14	+0.1
4,763,224	+		GFF4766	0.15	-1.9
4,763,224	+		GFF4766	0.15	-0.3
4,763,224	+		GFF4766	0.15	-2.6
4,763,227	-		GFF4766	0.16	-0.6
4,763,227	-		GFF4766	0.16	-2.0
4,763,231	+		GFF4766	0.17	-2.0
4,763,232	-		GFF4766	0.17	+1.0
4,763,259	+		GFF4766	0.25	+0.5
4,763,295	-		GFF4766	0.35	-3.2
4,763,300	+		GFF4766	0.36	-1.8
4,763,330	+		GFF4766	0.44	-1.1
4,763,330	+		GFF4766	0.44	-0.8
4,763,330	+		GFF4766	0.44	-0.0
4,763,330	+		GFF4766	0.44	-1.5
4,763,330	+		GFF4766	0.44	-0.6
4,763,330	+		GFF4766	0.44	+0.3
4,763,330	+		GFF4766	0.44	-1.0
4,763,330	+		GFF4766	0.44	+0.5
4,763,338	+		GFF4766	0.47	-0.9
4,763,338	-		GFF4766	0.47	+0.4
4,763,353	+		GFF4766	0.51	-1.2
4,763,360	-		GFF4766	0.53	-0.9
4,763,365	+		GFF4766	0.54	-2.6
4,763,420	+		GFF4766	0.69	-0.2
4,763,424	-		GFF4766	0.70	-0.5
4,763,428	-		GFF4766	0.71	-0.0
4,763,433	-		GFF4766	0.73	+0.6
4,763,433	-		GFF4766	0.73	-1.2
4,763,447	+		GFF4766	0.77	-2.3
4,763,474	+		GFF4766	0.84	-0.6
4,763,482	-		GFF4766	0.86	-0.1