Strain Fitness in Sphingobium sp. HT1-2 around GFF4761

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,758,115	-				-1.7
4,758,161	+				-1.5
4,758,161	+				-1.9
4,758,161	+				+0.4
4,758,169	-				-1.9
4,758,169	-				+0.9
4,758,169	-				-1.2
4,758,169	-				-1.9
4,758,178	+				-0.6
4,758,202	+				-2.2
4,758,205	-				-1.9
4,758,247	+		GFF4760	0.10	-2.5
4,758,323	-		GFF4760	0.20	-2.1
4,758,323	-		GFF4760	0.20	-1.7
4,758,412	+		GFF4760	0.33	-1.8
4,758,476	-		GFF4760	0.41	-1.9
4,758,504	-		GFF4760	0.45	-1.9
4,758,511	-		GFF4760	0.46	-1.9
4,758,590	+		GFF4760	0.57	-2.4
4,758,598	-		GFF4760	0.58	-1.7
4,758,635	-		GFF4760	0.63	-0.8
4,758,661	+		GFF4760	0.66	-2.5
4,758,695	-		GFF4760	0.71	-1.9
4,758,753	+		GFF4760	0.79	-1.7
4,758,804	+		GFF4760	0.86	-1.7
4,758,862	-				-1.6
4,758,910	+				-1.8
4,758,910	+				-0.1
4,758,918	-				-1.2
4,758,918	-				-1.3
4,758,932	-				-2.0
4,758,937	+				-0.3
4,758,937	+				+0.3
4,758,941	+				-0.2
4,758,941	+				-3.5
4,758,945	-				-1.1
4,758,945	-				-0.6
4,758,945	-				-0.7
4,758,945	-				-0.8
4,758,945	-				-1.2
4,758,945	-				-0.0
4,758,945	-				-0.7
4,758,947	+				-2.1
4,758,949	-				+0.5
4,758,950	-				-1.1
4,758,971	+				-1.4
4,758,971	+				-0.7
4,758,979	-				-1.8
4,758,979	-				-0.5
4,758,979	-				+0.2
4,758,991	-		GFF4761	0.11	+0.1
4,758,991	-		GFF4761	0.11	-1.0
4,759,024	-		GFF4761	0.16	-0.7
4,759,026	+		GFF4761	0.16	-1.5
4,759,028	+		GFF4761	0.16	+0.2
4,759,028	+		GFF4761	0.16	-0.5
4,759,031	-		GFF4761	0.17	-2.8
4,759,047	+		GFF4761	0.19	+1.2
4,759,055	-		GFF4761	0.20	-2.1
4,759,058	+		GFF4761	0.20	-1.7
4,759,113	+		GFF4761	0.28	-2.6
4,759,119	-		GFF4761	0.29	-1.2
4,759,139	+		GFF4761	0.31	+0.4
4,759,185	+		GFF4761	0.37	-0.8
4,759,185	+		GFF4761	0.37	-0.7
4,759,186	+		GFF4761	0.37	+0.9
4,759,186	+		GFF4761	0.37	+1.1
4,759,189	-		GFF4761	0.38	-0.9
4,759,194	-		GFF4761	0.39	-0.9
4,759,198	-		GFF4761	0.39	+0.3
4,759,224	-		GFF4761	0.43	-1.1
4,759,241	+		GFF4761	0.45	+0.3
4,759,241	+		GFF4761	0.45	-1.3
4,759,241	+		GFF4761	0.45	-0.1
4,759,242	+		GFF4761	0.45	+0.9
4,759,249	-		GFF4761	0.46	-1.9
4,759,249	-		GFF4761	0.46	+0.9
4,759,249	-		GFF4761	0.46	+1.1
4,759,263	+		GFF4761	0.48	+0.5
4,759,263	+		GFF4761	0.48	-1.4
4,759,270	+		GFF4761	0.49	-0.5
4,759,271	-		GFF4761	0.49	-0.2
4,759,276	+		GFF4761	0.50	+0.3
4,759,276	+		GFF4761	0.50	+0.1
4,759,278	-		GFF4761	0.50	+0.3
4,759,278	-		GFF4761	0.50	-0.2
4,759,281	+		GFF4761	0.50	-0.2
4,759,283	-		GFF4761	0.50	-1.8
4,759,283	-		GFF4761	0.50	-1.9
4,759,285	+		GFF4761	0.51	-0.6
4,759,318	+		GFF4761	0.55	-0.9
4,759,318	+		GFF4761	0.55	-0.7
4,759,320	+		GFF4761	0.55	-0.5
4,759,374	-		GFF4761	0.63	-2.8
4,759,419	-		GFF4761	0.69	-2.2
4,759,421	+		GFF4761	0.69	+0.3
4,759,428	+		GFF4761	0.70	-0.7
4,759,428	+		GFF4761	0.70	+0.3
4,759,429	-		GFF4761	0.70	-0.4
4,759,433	+		GFF4761	0.71	-1.4
4,759,446	+		GFF4761	0.72	-1.0
4,759,457	+		GFF4761	0.74	+0.1
4,759,500	+		GFF4761	0.80	-2.6
4,759,504	+		GFF4761	0.80	-0.7
4,759,521	-		GFF4761	0.82	-0.5
4,759,523	+		GFF4761	0.83	-2.7
4,759,523	+		GFF4761	0.83	-0.9
4,759,540	-		GFF4761	0.85	-0.5
4,759,572	+		GFF4761	0.89	-1.9
4,759,573	-		GFF4761	0.89	+0.9
4,759,588	-				-3.1
4,759,608	+				-1.7
4,759,608	+				-0.4
4,759,608	+				-3.2
4,759,608	+				-2.1
4,759,613	+				-2.6
4,759,618	+				+0.9
4,759,618	+				-0.1
4,759,618	+				-2.6
4,759,618	+				-0.3
4,759,626	-				-1.3
4,759,647	-				-0.6
4,759,657	-				-1.7
4,759,662	+				+0.3
4,759,664	+				-0.1
4,759,672	-				-0.5
4,759,672	-				+0.1
4,759,672	-				-0.7
4,759,677	-				-0.9
4,759,682	+				+0.7
4,759,682	+				-0.2
4,759,686	+				-0.1
4,759,691	+				-2.9
4,759,691	+				-0.7
4,759,691	+				-2.3
4,759,691	+				+0.2
4,759,694	-				-1.5
4,759,696	+				+0.2
4,759,699	-				+0.4
4,759,700	-				-0.6
4,759,700	-				-0.0
4,759,704	-				-0.9
4,759,704	-				+0.1
4,759,717	+				-0.9
4,759,717	+				-0.1
4,759,725	-				+0.5
4,759,725	-				+0.2
4,759,725	-				-0.2
4,759,743	+				+0.1
4,759,751	-				-1.6
4,759,769	-		GFF4762	0.14	+0.3
4,759,769	-		GFF4762	0.14	-2.0
4,759,769	-		GFF4762	0.14	-1.6
4,759,791	+		GFF4762	0.20	+0.5
4,759,796	+		GFF4762	0.22	-0.4
4,759,809	+		GFF4762	0.25	-1.7
4,759,809	+		GFF4762	0.25	-0.4
4,759,809	+		GFF4762	0.25	-0.6
4,759,833	+		GFF4762	0.32	-1.0
4,759,838	+		GFF4762	0.34	-1.0
4,759,841	-		GFF4762	0.34	+0.3
4,759,841	-		GFF4762	0.34	-2.8
4,759,854	-		GFF4762	0.38	-1.3
4,759,856	-		GFF4762	0.39	-2.3
4,759,914	+		GFF4762	0.55	-2.3
4,759,937	+		GFF4762	0.62	-0.3
4,759,938	-		GFF4762	0.62	+0.6
4,759,965	-		GFF4762	0.70	+0.4
4,759,971	-		GFF4762	0.72	-2.4
4,759,972	-		GFF4762	0.72	-0.6
4,759,986	+		GFF4762	0.76	-1.0
4,759,989	-		GFF4762	0.77	-0.9
4,759,991	+		GFF4762	0.77	-2.2
4,759,991	+		GFF4762	0.77	-0.6
4,759,991	+		GFF4762	0.77	-0.4
4,759,991	+		GFF4762	0.77	+0.2
4,759,994	-		GFF4762	0.78	-0.0
4,759,999	-		GFF4762	0.79	-0.6
4,759,999	-		GFF4762	0.79	-0.5
4,759,999	-		GFF4762	0.79	+0.1
4,759,999	-		GFF4762	0.79	-1.8
4,759,999	-		GFF4762	0.79	-0.6
4,759,999	-		GFF4762	0.79	-2.4
4,759,999	-		GFF4762	0.79	-1.6
4,759,999	-		GFF4762	0.79	-1.7
4,759,999	-		GFF4762	0.79	-1.4
4,760,000	-		GFF4762	0.80	+0.1
4,760,007	-		GFF4762	0.82	-2.5
4,760,012	-		GFF4762	0.83	-0.6
4,760,026	+		GFF4762	0.87	+0.5
4,760,031	+		GFF4762	0.89	+0.1
4,760,033	+		GFF4762	0.89	-0.3
4,760,034	-		GFF4762	0.89	-1.4
4,760,039	+				-0.4
4,760,039	-				-1.5
4,760,039	-				-1.2
4,760,039	-				-2.8
4,760,039	-				-0.8
4,760,040	+				-2.3
4,760,041	+				+0.3
4,760,048	-				-0.6
4,760,050	+				-0.7
4,760,058	-				-0.1
4,760,058	-				-2.2
4,760,058	-				-1.0
4,760,063	-				-2.8
4,760,105	+				-0.8
4,760,110	+				-1.6
4,760,110	+				-1.5
4,760,110	+				-0.4
4,760,111	+				+0.5
4,760,111	+				-2.3
4,760,118	-				-0.2
4,760,118	-				-1.7
4,760,119	-				-0.0
4,760,119	-				-0.7
4,760,119	-				-2.6
4,760,119	-				-1.0
4,760,124	-				-0.2
4,760,129	+				+0.4
4,760,139	+				+0.4
4,760,141	-				-1.0
4,760,141	-				-0.8
4,760,148	+				-0.2
4,760,155	-				-2.2
4,760,183	+				+0.3
4,760,188	+				-0.1
4,760,196	+				-1.0
4,760,196	-				+0.3
4,760,201	-				-0.3
4,760,225	+				+0.5
4,760,225	+				-1.5
4,760,225	+				-0.1
4,760,239	+				-0.2
4,760,256	-		GFF4763	0.11	-0.8
4,760,257	-		GFF4763	0.11	-0.3
4,760,258	+		GFF4763	0.11	-0.1
4,760,269	+		GFF4763	0.12	-1.0
4,760,294	+		GFF4763	0.15	-0.4
4,760,302	+		GFF4763	0.16	+0.8
4,760,302	+		GFF4763	0.16	-1.0
4,760,302	+		GFF4763	0.16	-0.5
4,760,304	+		GFF4763	0.16	+0.1
4,760,305	-		GFF4763	0.16	+0.2
4,760,310	-		GFF4763	0.17	-2.2
4,760,310	-		GFF4763	0.17	-0.6
4,760,312	-		GFF4763	0.17	+0.2
4,760,323	+		GFF4763	0.18	-0.1
4,760,389	+		GFF4763	0.26	-2.5
4,760,431	+		GFF4763	0.31	-0.5
4,760,472	+		GFF4763	0.36	+0.1
4,760,480	-		GFF4763	0.36	-1.1
4,760,493	+		GFF4763	0.38	+0.2
4,760,549	+		GFF4763	0.44	-0.5
4,760,562	-		GFF4763	0.46	+1.1
4,760,595	+		GFF4763	0.50	-0.7
4,760,595	+		GFF4763	0.50	-2.0
4,760,603	-		GFF4763	0.51	-0.9
4,760,623	+		GFF4763	0.53	-2.9
4,760,623	+		GFF4763	0.53	-2.2
4,760,623	+		GFF4763	0.53	-1.9
4,760,631	-		GFF4763	0.54	-1.9
4,760,631	-		GFF4763	0.54	-1.2
4,760,646	+		GFF4763	0.56	-1.0