Strain Fitness in Sphingobium sp. HT1-2 around GFF4740

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,738,408	-		GFF4738	0.61	-1.1
4,738,409	-		GFF4738	0.61	-1.7
4,738,409	-		GFF4738	0.61	-0.2
4,738,421	+		GFF4738	0.62	+0.9
4,738,429	-		GFF4738	0.63	-0.2
4,738,432	+		GFF4738	0.63	-2.2
4,738,432	-		GFF4738	0.63	+0.9
4,738,433	-		GFF4738	0.63	-0.4
4,738,440	-		GFF4738	0.64	-0.0
4,738,440	-		GFF4738	0.64	+0.8
4,738,472	-		GFF4738	0.68	-0.6
4,738,492	-		GFF4738	0.70	-0.0
4,738,497	+		GFF4738	0.71	+1.1
4,738,505	-		GFF4738	0.71	-0.7
4,738,511	+		GFF4738	0.72	-0.4
4,738,511	+		GFF4738	0.72	+0.2
4,738,517	-		GFF4738	0.73	-1.3
4,738,526	-		GFF4738	0.74	-0.5
4,738,553	-		GFF4738	0.77	-1.9
4,738,572	-		GFF4738	0.79	+0.9
4,738,572	-		GFF4738	0.79	+0.3
4,738,572	-		GFF4738	0.79	-0.8
4,738,572	-		GFF4738	0.79	+1.0
4,738,588	+		GFF4738	0.80	-1.0
4,738,595	+		GFF4738	0.81	-0.1
4,738,614	-		GFF4738	0.83	+0.2
4,738,614	-		GFF4738	0.83	-0.3
4,738,641	+		GFF4738	0.86	-0.3
4,738,641	+		GFF4738	0.86	+0.7
4,738,643	+		GFF4738	0.87	-0.2
4,738,643	+		GFF4738	0.87	+0.3
4,738,643	+		GFF4738	0.87	+0.2
4,738,643	+		GFF4738	0.87	-0.6
4,738,653	-		GFF4738	0.88	+0.3
4,738,658	+		GFF4738	0.88	+0.5
4,738,658	+		GFF4738	0.88	+1.1
4,738,658	+		GFF4738	0.88	+0.5
4,738,658	+		GFF4738	0.88	+1.0
4,738,658	+		GFF4738	0.88	-2.1
4,738,660	-		GFF4738	0.88	+0.0
4,738,661	-		GFF4738	0.88	-0.3
4,738,666	-		GFF4738	0.89	-2.4
4,738,666	-		GFF4738	0.89	+0.5
4,738,667	-		GFF4738	0.89	-0.6
4,738,668	+		GFF4738	0.89	-0.7
4,738,668	+		GFF4738	0.89	+0.3
4,738,668	+		GFF4738	0.89	-0.6
4,738,668	+		GFF4738	0.89	-0.3
4,738,668	+		GFF4738	0.89	-0.6
4,738,668	+		GFF4738	0.89	+0.9
4,738,676	-				+0.2
4,738,676	-				+0.7
4,738,676	-				+0.2
4,738,726	-				-0.9
4,738,727	+				-1.3
4,738,735	-				+0.1
4,738,739	+				+0.4
4,738,766	+				+1.1
4,738,767	+				+1.3
4,738,800	-				-1.1
4,738,854	-				+2.1
4,738,860	+				-1.9
4,738,886	-				-1.9
4,738,888	+				-0.1
4,738,896	-				-1.0
4,738,944	-				+1.2
4,738,960	+				-0.6
4,738,964	+				-2.6
4,738,965	+				-1.7
4,738,973	-				-0.6
4,738,980	+				-1.0
4,739,085	-		GFF4739	0.12	+0.3
4,739,100	-		GFF4739	0.17	-1.4
4,739,107	+		GFF4739	0.19	-2.7
4,739,107	-		GFF4739	0.19	-0.7
4,739,115	-		GFF4739	0.22	+0.2
4,739,115	-		GFF4739	0.22	+1.3
4,739,115	-		GFF4739	0.22	-1.8
4,739,132	-		GFF4739	0.27	+0.2
4,739,183	+		GFF4739	0.44	-2.6
4,739,191	-		GFF4739	0.46	+0.5
4,739,191	-		GFF4739	0.46	+0.0
4,739,193	+		GFF4739	0.47	-2.1
4,739,228	+		GFF4739	0.58	+0.1
4,739,237	+		GFF4739	0.61	-0.7
4,739,251	-		GFF4739	0.66	-0.3
4,739,315	-		GFF4739	0.87	+0.9
4,739,322	+		GFF4739	0.89	+0.2
4,739,322	+		GFF4739	0.89	-2.2
4,739,362	-				+0.9
4,739,364	+				-1.4
4,739,372	-				-0.4
4,739,478	+		GFF4740	0.25	+0.2
4,739,480	+		GFF4740	0.26	-1.8
4,739,513	+		GFF4740	0.37	-1.6
4,739,533	+		GFF4740	0.43	-1.4
4,739,538	+		GFF4740	0.45	+0.3
4,739,541	-		GFF4740	0.46	-1.8
4,739,565	+		GFF4740	0.54	-2.0
4,739,565	+		GFF4740	0.54	-3.1
4,739,567	+		GFF4740	0.55	+1.5
4,739,567	+		GFF4740	0.55	-0.1
4,739,568	-		GFF4740	0.55	-0.2
4,739,573	-		GFF4740	0.57	+1.0
4,739,573	-		GFF4740	0.57	+0.6
4,739,579	+		GFF4740	0.59	-2.2
4,739,585	-		GFF4740	0.61	-1.3
4,739,585	-		GFF4740	0.61	-0.2
4,739,585	-		GFF4740	0.61	+0.6
4,739,585	-		GFF4740	0.61	+1.2
4,739,585	-		GFF4740	0.61	+0.4
4,739,585	-		GFF4740	0.61	+0.2
4,739,586	-		GFF4740	0.61	+0.8
4,739,588	+		GFF4740	0.62	+0.2
4,739,588	+		GFF4740	0.62	-1.4
4,739,588	+		GFF4740	0.62	-0.2
4,739,588	+		GFF4740	0.62	-1.8
4,739,588	+		GFF4740	0.62	-2.7
4,739,596	-		GFF4740	0.64	-1.7
4,739,596	-		GFF4740	0.64	-1.6
4,739,596	-		GFF4740	0.64	-1.0
4,739,596	-		GFF4740	0.64	-0.1
4,739,596	-		GFF4740	0.64	-0.4
4,739,596	-		GFF4740	0.64	-0.0
4,739,601	-		GFF4740	0.66	-0.6
4,739,601	-		GFF4740	0.66	-0.2
4,739,615	+		GFF4740	0.71	-0.5
4,739,644	+		GFF4740	0.80	+1.4
4,739,650	+		GFF4740	0.82	+0.6
4,739,658	-		GFF4740	0.85	-0.9
4,739,672	+		GFF4740	0.90	+0.3
4,739,678	+				-1.0
4,739,680	-				-0.0
4,739,682	+				+0.5
4,739,713	-				-0.2
4,739,713	-				+0.9
4,739,723	-				-1.9
4,739,746	-				+0.4
4,739,748	-				-0.3
4,739,752	-				+0.9
4,739,757	+				+1.0
4,739,759	+				-1.2
4,739,759	+				+0.1
4,739,759	+				-1.4
4,739,759	+				-1.6
4,739,759	+				-0.6
4,739,759	+				+0.5
4,739,759	+				-0.4
4,739,759	+				+0.4
4,739,759	+				+0.3
4,739,759	+				-0.2
4,739,765	-		GFF4741	0.11	-0.7
4,739,767	-		GFF4741	0.12	-0.0
4,739,767	-		GFF4741	0.12	-0.2
4,739,767	-		GFF4741	0.12	-0.0
4,739,767	-		GFF4741	0.12	-2.0
4,739,767	-		GFF4741	0.12	-0.9
4,739,767	-		GFF4741	0.12	-1.1
4,739,767	-		GFF4741	0.12	-0.9
4,739,767	-		GFF4741	0.12	+0.5
4,739,767	-		GFF4741	0.12	-0.8
4,739,767	-		GFF4741	0.12	+0.2
4,739,767	-		GFF4741	0.12	-0.5
4,739,767	-		GFF4741	0.12	+0.3
4,739,767	-		GFF4741	0.12	+0.6
4,739,767	-		GFF4741	0.12	-2.7
4,739,783	+		GFF4741	0.15	-1.0
4,739,791	-		GFF4741	0.17	+0.2
4,739,803	+		GFF4741	0.20	-0.1
4,739,806	-		GFF4741	0.21	+0.6
4,739,811	+		GFF4741	0.22	-0.1
4,739,811	-		GFF4741	0.22	-1.4
4,739,811	-		GFF4741	0.22	-0.7
4,739,811	-		GFF4741	0.22	-0.0
4,739,811	-		GFF4741	0.22	+0.5
4,739,811	-		GFF4741	0.22	-0.4
4,739,819	-		GFF4741	0.24	+0.5
4,739,846	+		GFF4741	0.30	-0.2
4,739,850	+		GFF4741	0.31	-2.5
4,739,850	+		GFF4741	0.31	+0.4
4,739,850	+		GFF4741	0.31	-0.5
4,739,850	+		GFF4741	0.31	+0.1
4,739,850	+		GFF4741	0.31	-2.2
4,739,850	+		GFF4741	0.31	+0.4
4,739,851	+		GFF4741	0.31	-1.0
4,739,851	+		GFF4741	0.31	+0.9
4,739,858	-		GFF4741	0.33	+0.4
4,739,858	-		GFF4741	0.33	-0.6
4,739,858	-		GFF4741	0.33	-2.5
4,739,858	-		GFF4741	0.33	+0.2
4,739,859	-		GFF4741	0.33	-2.0
4,739,859	-		GFF4741	0.33	-0.1
4,739,887	+		GFF4741	0.40	+0.4
4,739,891	+		GFF4741	0.41	-1.5
4,739,894	-		GFF4741	0.42	+0.6
4,739,909	+		GFF4741	0.45	-0.6
4,739,917	-		GFF4741	0.47	-0.4
4,739,917	-		GFF4741	0.47	-1.9
4,739,917	-		GFF4741	0.47	+1.4
4,739,918	+		GFF4741	0.47	-0.3
4,740,010	+		GFF4741	0.69	-0.3
4,740,038	-		GFF4741	0.75	+0.3
4,740,039	+		GFF4741	0.76	+0.3
4,740,049	+		GFF4741	0.78	-1.0
4,740,057	-		GFF4741	0.80	-1.0
4,740,057	-		GFF4741	0.80	+0.8
4,740,062	-		GFF4741	0.81	+0.0
4,740,069	+		GFF4741	0.83	+0.2
4,740,069	+		GFF4741	0.83	-0.5
4,740,072	-		GFF4741	0.83	+0.5
4,740,079	+		GFF4741	0.85	+1.5
4,740,087	-		GFF4741	0.87	+0.3
4,740,087	-		GFF4741	0.87	-1.1
4,740,108	+				-0.7
4,740,108	+				+0.8
4,740,108	+				-1.2
4,740,127	+				-1.2
4,740,127	+				-1.9
4,740,127	+				+0.8
4,740,135	-				+0.9
4,740,135	-				+1.1
4,740,135	-				-0.1
4,740,135	-				+0.2
4,740,135	-				+0.6
4,740,135	-				-0.1
4,740,146	-				-0.9
4,740,149	+				-1.3
4,740,149	+				-0.7
4,740,149	+				-1.9
4,740,157	-				+1.1
4,740,157	-				-0.0
4,740,157	-				-1.0
4,740,157	-				+0.4
4,740,157	-				+0.6
4,740,168	+				-1.7
4,740,168	+				-0.7
4,740,168	+				-0.6
4,740,168	+				-1.0
4,740,176	-				+0.0
4,740,179	+				+0.8
4,740,179	+				-0.4
4,740,179	+				-2.4
4,740,187	-				+0.1
4,740,187	-				-1.3
4,740,187	-				+0.1
4,740,187	-				-0.2
4,740,187	-				-0.4
4,740,187	-				+0.7
4,740,199	-				+0.4
4,740,199	-				-0.0
4,740,224	-				+0.1
4,740,232	+				-1.0
4,740,232	+				-0.4
4,740,233	+				-0.2
4,740,233	+				+0.1
4,740,241	-				+0.3
4,740,271	+		GFF4742	0.13	+0.2
4,740,279	-		GFF4742	0.14	-1.5
4,740,365	-		GFF4742	0.23	-0.6
4,740,414	-		GFF4742	0.28	+0.0
4,740,424	-		GFF4742	0.29	-0.8
4,740,449	+		GFF4742	0.32	-0.5
4,740,457	-		GFF4742	0.33	+0.0
4,740,472	-		GFF4742	0.35	-0.1
4,740,474	+		GFF4742	0.35	-0.8
4,740,474	+		GFF4742	0.35	-1.5
4,740,482	-		GFF4742	0.36	-0.0
4,740,483	+		GFF4742	0.36	+0.2
4,740,508	+		GFF4742	0.39	+0.5
4,740,529	-		GFF4742	0.41	-0.7
4,740,529	-		GFF4742	0.41	+2.1
4,740,561	-		GFF4742	0.44	-0.4
4,740,569	+		GFF4742	0.45	-0.8
4,740,577	-		GFF4742	0.46	+1.4
4,740,585	+		GFF4742	0.47	-0.5
4,740,622	+		GFF4742	0.51	+0.2
4,740,622	+		GFF4742	0.51	+0.6
4,740,630	-		GFF4742	0.52	-0.7
4,740,630	-		GFF4742	0.52	-1.6
4,740,632	+		GFF4742	0.52	-1.1
4,740,632	+		GFF4742	0.52	-0.4
4,740,632	+		GFF4742	0.52	+0.3
4,740,632	+		GFF4742	0.52	+0.7
4,740,637	-		GFF4742	0.52	-0.4
4,740,640	-		GFF4742	0.53	+0.8
4,740,640	-		GFF4742	0.53	-0.6
4,740,640	-		GFF4742	0.53	-0.2
4,740,644	+		GFF4742	0.53	-0.3
4,740,644	+		GFF4742	0.53	-0.3
4,740,644	+		GFF4742	0.53	-0.9
4,740,652	-		GFF4742	0.54	-1.5
4,740,672	+		GFF4742	0.56	-0.2
4,740,675	-		GFF4742	0.57	+0.8
4,740,675	-		GFF4742	0.57	+1.2
4,740,700	+		GFF4742	0.59	+0.3