Strain Fitness in Sphingobium sp. HT1-2 around GFF4734

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,732,004	-				-0.0
4,732,004	-				+0.7
4,732,004	-				+0.2
4,732,004	-				-0.5
4,732,014	+				-1.2
4,732,014	+				-1.4
4,732,014	+				-0.8
4,732,042	+		GFF4732	0.21	-0.3
4,732,045	-		GFF4732	0.22	+0.3
4,732,064	+		GFF4732	0.31	-0.0
4,732,064	+		GFF4732	0.31	-0.1
4,732,064	+		GFF4732	0.31	-2.1
4,732,064	+		GFF4732	0.31	-2.8
4,732,064	+		GFF4732	0.31	-1.0
4,732,072	-		GFF4732	0.35	-0.7
4,732,072	-		GFF4732	0.35	-0.0
4,732,072	-		GFF4732	0.35	-0.9
4,732,072	-		GFF4732	0.35	-0.5
4,732,090	+		GFF4732	0.44	-1.7
4,732,136	+		GFF4732	0.66	-0.3
4,732,136	+		GFF4732	0.66	-0.1
4,732,136	+		GFF4732	0.66	-0.4
4,732,136	+		GFF4732	0.66	+0.7
4,732,136	+		GFF4732	0.66	+0.6
4,732,136	+		GFF4732	0.66	+1.1
4,732,136	+		GFF4732	0.66	-0.8
4,732,136	+		GFF4732	0.66	+0.3
4,732,144	-		GFF4732	0.70	+0.5
4,732,144	-		GFF4732	0.70	-0.6
4,732,144	-		GFF4732	0.70	+0.8
4,732,146	-		GFF4732	0.70	-0.7
4,732,146	-		GFF4732	0.70	-1.1
4,732,182	+		GFF4732	0.88	-1.7
4,732,184	+		GFF4732	0.89	-0.2
4,732,197	+				-0.0
4,732,197	+				-0.1
4,732,239	+				-1.2
4,732,247	+				+0.9
4,732,317	+				-1.0
4,732,324	-				-1.7
4,732,335	+				-2.0
4,732,348	-				+0.3
4,732,376	+		GFF4733	0.14	+0.5
4,732,394	-		GFF4733	0.17	-1.0
4,732,395	+		GFF4733	0.17	-0.3
4,732,395	-		GFF4733	0.17	-0.6
4,732,403	-		GFF4733	0.19	+0.6
4,732,405	+		GFF4733	0.19	-0.1
4,732,413	-		GFF4733	0.20	+1.8
4,732,413	-		GFF4733	0.20	-0.0
4,732,455	-		GFF4733	0.27	+0.6
4,732,460	+		GFF4733	0.28	-0.4
4,732,467	-		GFF4733	0.29	-1.3
4,732,468	-		GFF4733	0.29	-0.1
4,732,474	-		GFF4733	0.30	+0.2
4,732,483	+		GFF4733	0.31	-1.2
4,732,483	+		GFF4733	0.31	-0.1
4,732,491	-		GFF4733	0.33	+0.8
4,732,491	-		GFF4733	0.33	+1.3
4,732,519	+		GFF4733	0.37	-1.8
4,732,522	-		GFF4733	0.38	-0.3
4,732,527	-		GFF4733	0.38	-0.6
4,732,527	-		GFF4733	0.38	-2.6
4,732,537	+		GFF4733	0.40	-1.3
4,732,540	+		GFF4733	0.41	-0.9
4,732,545	+		GFF4733	0.41	-2.0
4,732,550	+		GFF4733	0.42	+0.8
4,732,570	+		GFF4733	0.45	+0.8
4,732,578	-		GFF4733	0.47	-1.9
4,732,578	-		GFF4733	0.47	+0.9
4,732,585	-		GFF4733	0.48	-0.1
4,732,648	+		GFF4733	0.58	-0.4
4,732,648	+		GFF4733	0.58	-0.1
4,732,648	+		GFF4733	0.58	+1.4
4,732,648	+		GFF4733	0.58	-0.2
4,732,648	+		GFF4733	0.58	-0.4
4,732,648	+		GFF4733	0.58	+1.3
4,732,648	+		GFF4733	0.58	-1.5
4,732,656	-		GFF4733	0.59	-0.5
4,732,656	-		GFF4733	0.59	+0.6
4,732,656	-		GFF4733	0.59	-0.2
4,732,656	-		GFF4733	0.59	+0.8
4,732,656	-		GFF4733	0.59	+0.1
4,732,659	+		GFF4733	0.60	+0.1
4,732,677	+		GFF4733	0.62	-0.2
4,732,710	+		GFF4733	0.68	-0.2
4,732,718	-		GFF4733	0.69	+0.3
4,732,718	-		GFF4733	0.69	+0.8
4,732,718	-		GFF4733	0.69	+0.3
4,732,718	-		GFF4733	0.69	+1.6
4,732,764	-		GFF4733	0.76	+0.5
4,732,770	+		GFF4733	0.77	+0.9
4,732,770	+		GFF4733	0.77	-0.7
4,732,770	+		GFF4733	0.77	-0.2
4,732,770	+		GFF4733	0.77	-1.0
4,732,773	-		GFF4733	0.78	+0.2
4,732,777	-		GFF4733	0.79	-0.9
4,732,802	+		GFF4733	0.83	+0.8
4,732,804	-		GFF4733	0.83	+0.3
4,732,828	+		GFF4733	0.87	+0.0
4,732,833	+		GFF4733	0.88	+0.6
4,732,833	+		GFF4733	0.88	+0.3
4,732,833	+		GFF4733	0.88	-0.8
4,732,841	-		GFF4733	0.89	-2.4
4,732,841	-		GFF4733	0.89	-0.5
4,732,859	+				+0.9
4,732,865	-				-1.2
4,732,878	+				+0.0
4,732,878	+				-2.0
4,732,886	-				+0.3
4,732,886	-				-2.4
4,732,905	+				-0.4
4,732,912	+				-0.8
4,732,913	-				+0.4
4,732,967	+				+0.8
4,732,968	-				-1.8
4,732,975	-				+0.0
4,732,995	+				-0.7
4,732,995	+				-2.0
4,732,995	+				+0.9
4,732,995	+				-0.3
4,732,995	+				+0.2
4,732,995	+				-0.9
4,733,003	-				-2.2
4,733,003	-				-1.0
4,733,012	+				-1.6
4,733,012	-				-0.0
4,733,020	-				+0.6
4,733,046	+				+0.5
4,733,046	+				+1.5
4,733,046	+				+0.6
4,733,046	+				-1.0
4,733,046	+				-0.2
4,733,046	+				-0.9
4,733,054	-				-0.9
4,733,054	-				-0.7
4,733,054	-				+0.9
4,733,078	+				-1.4
4,733,081	-				-0.8
4,733,086	-				+0.3
4,733,101	+				+0.9
4,733,101	+				-0.1
4,733,106	+				-0.2
4,733,109	-				+1.2
4,733,124	+				-1.3
4,733,134	+				-0.5
4,733,142	-		GFF4734	0.10	+1.5
4,733,160	-		GFF4734	0.12	-0.8
4,733,179	+		GFF4734	0.13	+0.4
4,733,191	+		GFF4734	0.14	+0.1
4,733,199	+		GFF4734	0.15	+0.4
4,733,199	+		GFF4734	0.15	-0.3
4,733,221	+		GFF4734	0.16	-0.1
4,733,229	-		GFF4734	0.17	-0.3
4,733,252	+		GFF4734	0.18	+1.0
4,733,286	+		GFF4734	0.21	-0.2
4,733,286	+		GFF4734	0.21	-0.7
4,733,286	+		GFF4734	0.21	-1.4
4,733,294	-		GFF4734	0.22	+0.7
4,733,294	-		GFF4734	0.22	+0.3
4,733,333	+		GFF4734	0.24	-0.7
4,733,333	+		GFF4734	0.24	-0.1
4,733,341	-		GFF4734	0.25	-1.4
4,733,359	+		GFF4734	0.26	-2.6
4,733,397	+		GFF4734	0.29	-0.9
4,733,405	-		GFF4734	0.30	-0.2
4,733,432	-		GFF4734	0.32	+0.4
4,733,463	+		GFF4734	0.34	-0.4
4,733,467	+		GFF4734	0.34	+0.3
4,733,473	+		GFF4734	0.35	+0.9
4,733,476	-		GFF4734	0.35	-0.6
4,733,478	+		GFF4734	0.35	+0.4
4,733,478	+		GFF4734	0.35	+0.0
4,733,478	+		GFF4734	0.35	-1.9
4,733,486	-		GFF4734	0.36	-2.2
4,733,564	+		GFF4734	0.41	-0.2
4,733,564	+		GFF4734	0.41	+0.2
4,733,564	+		GFF4734	0.41	+0.6
4,733,564	+		GFF4734	0.41	+1.5
4,733,570	+		GFF4734	0.42	-0.2
4,733,572	-		GFF4734	0.42	+0.3
4,733,572	-		GFF4734	0.42	-0.8
4,733,572	-		GFF4734	0.42	-0.1
4,733,592	-		GFF4734	0.43	-0.0
4,733,594	+		GFF4734	0.43	-2.0
4,733,615	-		GFF4734	0.45	+0.6
4,733,617	+		GFF4734	0.45	-1.4
4,733,621	-		GFF4734	0.45	-0.3
4,733,621	-		GFF4734	0.45	-0.4
4,733,686	+		GFF4734	0.50	+0.1
4,733,690	-		GFF4734	0.50	-0.6
4,733,739	-		GFF4734	0.54	-0.2
4,733,766	+		GFF4734	0.56	-2.5
4,733,772	+		GFF4734	0.56	-1.0
4,733,775	-		GFF4734	0.57	-1.0
4,733,782	-		GFF4734	0.57	-0.0
4,733,783	+		GFF4734	0.57	+0.4
4,733,783	+		GFF4734	0.57	-0.9
4,733,788	+		GFF4734	0.58	+1.1
4,733,827	+		GFF4734	0.60	+0.2
4,733,827	+		GFF4734	0.60	-0.4
4,733,856	-		GFF4734	0.63	+0.6
4,733,879	-		GFF4734	0.64	+0.4
4,733,899	-		GFF4734	0.66	-0.1
4,733,899	-		GFF4734	0.66	-0.9
4,733,899	-		GFF4734	0.66	-0.2
4,733,901	+		GFF4734	0.66	-1.4
4,733,901	+		GFF4734	0.66	-0.7
4,733,901	+		GFF4734	0.66	-0.1
4,733,901	+		GFF4734	0.66	+0.4
4,733,901	+		GFF4734	0.66	-1.7
4,733,901	+		GFF4734	0.66	-1.2
4,733,909	-		GFF4734	0.66	-0.1
4,733,909	-		GFF4734	0.66	+0.3
4,733,909	-		GFF4734	0.66	+0.3
4,733,909	-		GFF4734	0.66	-1.1
4,733,909	-		GFF4734	0.66	-0.9
4,733,909	-		GFF4734	0.66	-0.1
4,733,926	+		GFF4734	0.68	-0.6
4,733,934	-		GFF4734	0.68	+1.0
4,733,935	+		GFF4734	0.68	+0.9
4,733,935	+		GFF4734	0.68	+0.2
4,733,939	-		GFF4734	0.69	+1.3
4,733,954	+		GFF4734	0.70	-0.4
4,733,964	+		GFF4734	0.70	-2.2
4,733,964	+		GFF4734	0.70	-0.9
4,733,972	-		GFF4734	0.71	-0.1
4,733,972	-		GFF4734	0.71	-1.2
4,733,978	+		GFF4734	0.71	-0.6
4,733,978	+		GFF4734	0.71	-0.1
4,733,982	-		GFF4734	0.72	-2.4
4,733,984	-		GFF4734	0.72	+1.0
4,733,986	-		GFF4734	0.72	+0.2
4,733,986	-		GFF4734	0.72	-0.6
4,734,012	-		GFF4734	0.74	-1.7
4,734,023	+		GFF4734	0.75	+0.2
4,734,038	+		GFF4734	0.76	+0.9
4,734,043	+		GFF4734	0.76	+0.3
4,734,046	-		GFF4734	0.76	-0.5
4,734,046	-		GFF4734	0.76	-0.3
4,734,046	-		GFF4734	0.76	-0.0
4,734,087	+		GFF4734	0.79	+0.5
4,734,087	+		GFF4734	0.79	-0.8
4,734,087	+		GFF4734	0.79	-0.4
4,734,087	+		GFF4734	0.79	-0.9
4,734,087	+		GFF4734	0.79	+1.1
4,734,095	-		GFF4734	0.80	-0.9
4,734,095	-		GFF4734	0.80	+0.2
4,734,095	-		GFF4734	0.80	-0.6
4,734,095	-		GFF4734	0.80	+0.9
4,734,119	+		GFF4734	0.82	-0.4
4,734,119	+		GFF4734	0.82	+0.3
4,734,119	+		GFF4734	0.82	+0.5
4,734,119	+		GFF4734	0.82	+0.3
4,734,127	-		GFF4734	0.82	+1.3
4,734,127	-		GFF4734	0.82	-0.7
4,734,132	-		GFF4734	0.83	+0.1
4,734,168	+		GFF4734	0.85	+0.2
4,734,168	+		GFF4734	0.85	+0.3
4,734,169	+		GFF4734	0.85	+0.3
4,734,176	-		GFF4734	0.86	-0.4
4,734,176	-		GFF4734	0.86	+0.3
4,734,177	-		GFF4734	0.86	+0.0
4,734,182	+		GFF4734	0.86	-0.8
4,734,190	+		GFF4734	0.87	-2.1
4,734,193	-		GFF4734	0.87	-0.6
4,734,195	+		GFF4734	0.87	-0.3
4,734,202	+		GFF4734	0.88	-0.2
4,734,218	+		GFF4734	0.89	+0.4
4,734,226	+		GFF4734	0.89	+0.9
4,734,228	+		GFF4734	0.90	-0.5
4,734,228	+		GFF4734	0.90	-0.4
4,734,233	+				-0.0
4,734,233	+				+0.3
4,734,237	+				-1.1
4,734,240	-				+1.0
4,734,245	+				+0.6
4,734,245	+				-0.5
4,734,318	+				-0.2
4,734,338	+				+0.7
4,734,338	+				+0.2
4,734,338	+				-1.7
4,734,338	+				-1.8
4,734,338	+				+0.5
4,734,338	+				-0.0
4,734,338	+				-0.2
4,734,346	-				+0.2
4,734,346	-				+1.1
4,734,346	-				-1.0
4,734,346	-				+0.1
4,734,346	-				+1.0
4,734,346	-				-1.8
4,734,346	-				+0.1
4,734,348	+				+0.0
4,734,348	+				-0.6
4,734,348	+				-0.1
4,734,348	+				-1.4
4,734,349	+				+0.2
4,734,356	-				+1.1
4,734,356	-				+0.3
4,734,356	-				+1.6
4,734,357	+				-0.8
4,734,357	+				+0.2
4,734,370	-				-0.7
4,734,379	+				+1.5
4,734,394	+				+0.7
4,734,394	+				+0.5
4,734,394	+				-1.6
4,734,394	+				-1.2
4,734,402	-				-1.6
4,734,402	-				-1.4
4,734,402	-				-0.5
4,734,402	-				-0.0
4,734,402	-				+0.9
4,734,406	-				-0.1
4,734,487	+		GFF4735	0.12	-1.6
4,734,487	+		GFF4735	0.12	-0.3
4,734,487	+		GFF4735	0.12	-2.4
4,734,489	-		GFF4735	0.12	-0.8
4,734,495	-		GFF4735	0.12	-0.9
4,734,497	+		GFF4735	0.13	+0.3
4,734,502	+		GFF4735	0.13	-0.5
4,734,521	+		GFF4735	0.15	-0.7
4,734,521	+		GFF4735	0.15	-0.9
4,734,521	+		GFF4735	0.15	-0.5
4,734,521	+		GFF4735	0.15	-0.7
4,734,521	+		GFF4735	0.15	-0.2
4,734,527	+		GFF4735	0.16	-0.7
4,734,527	+		GFF4735	0.16	+1.5
4,734,529	-		GFF4735	0.16	-0.8
4,734,529	-		GFF4735	0.16	-0.2
4,734,529	-		GFF4735	0.16	+0.9
4,734,529	-		GFF4735	0.16	-0.9
4,734,529	-		GFF4735	0.16	+0.7
4,734,534	+		GFF4735	0.16	+0.3
4,734,542	-		GFF4735	0.17	-0.6
4,734,566	+		GFF4735	0.19	+0.4
4,734,586	-		GFF4735	0.21	-0.0
4,734,586	-		GFF4735	0.21	-0.4
4,734,586	-		GFF4735	0.21	-0.4
4,734,597	+		GFF4735	0.22	-0.9
4,734,616	+		GFF4735	0.24	-0.0
4,734,621	+		GFF4735	0.25	-0.2
4,734,624	+		GFF4735	0.25	-1.3
4,734,629	+		GFF4735	0.25	+1.0
4,734,629	+		GFF4735	0.25	+0.3
4,734,629	+		GFF4735	0.25	+0.5
4,734,629	+		GFF4735	0.25	-0.7
4,734,629	+		GFF4735	0.25	-0.6
4,734,629	+		GFF4735	0.25	-2.8
4,734,632	-		GFF4735	0.26	+0.3
4,734,632	-		GFF4735	0.26	-0.7
4,734,636	+		GFF4735	0.26	-0.1
4,734,637	-		GFF4735	0.26	-0.6
4,734,637	-		GFF4735	0.26	+0.8
4,734,637	-		GFF4735	0.26	-0.1
4,734,646	+		GFF4735	0.27	+0.9
4,734,654	-		GFF4735	0.28	-2.8
4,734,664	+		GFF4735	0.29	-1.2
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