Strain Fitness in Sphingobium sp. HT1-2 around GFF4724

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,722,493	+				-0.5
4,722,501	-				+0.1
4,722,505	+				+1.1
4,722,526	+				+0.9
4,722,534	-				-1.3
4,722,536	+				-0.9
4,722,536	+				+0.1
4,722,536	+				+1.0
4,722,536	+				-1.2
4,722,536	+				-0.9
4,722,543	+				+0.4
4,722,543	+				+1.1
4,722,544	-				+0.3
4,722,544	-				+0.3
4,722,544	-				-0.5
4,722,544	-				-0.1
4,722,551	+				+0.1
4,722,551	+				-1.7
4,722,551	+				+2.0
4,722,551	-				+0.8
4,722,561	-				+0.0
4,722,561	-				-1.3
4,722,564	+				+0.7
4,722,574	+				-0.5
4,722,574	+				+0.7
4,722,579	+				-1.0
4,722,582	-				+0.6
4,722,582	-				+1.4
4,722,585	+				+0.8
4,722,604	-				-1.9
4,722,633	-				+0.7
4,722,648	+				-0.2
4,722,648	+				-0.5
4,722,648	+				-0.1
4,722,648	+				+0.1
4,722,648	+				+1.0
4,722,648	+				+0.3
4,722,648	+				+0.2
4,722,648	+				+0.4
4,722,648	+				-0.2
4,722,656	-				-1.1
4,722,656	-				-0.3
4,722,656	-				+0.2
4,722,656	-				+0.5
4,722,656	-				-0.9
4,722,656	-				+1.4
4,722,656	-				+0.8
4,722,656	-				-1.4
4,722,658	+				-1.0
4,722,658	+				+0.4
4,722,658	+				-0.2
4,722,658	+				-1.4
4,722,658	+				-0.9
4,722,666	-				+1.4
4,722,666	-				-0.2
4,722,666	-				-0.1
4,722,677	+				+0.9
4,722,677	+				+0.9
4,722,677	+				-2.6
4,722,677	+				+0.8
4,722,685	-				-1.2
4,722,685	-				-0.8
4,722,685	-				-2.7
4,722,685	-				-2.1
4,722,685	-				-0.3
4,722,685	-				-0.1
4,722,685	-				+0.3
4,722,685	-				+1.4
4,722,687	+				+0.1
4,722,696	-				-0.7
4,722,703	-				-0.1
4,722,703	-				+0.5
4,722,703	-				-1.8
4,722,703	-				-0.1
4,722,703	-				-2.3
4,722,703	-				-1.7
4,722,703	-				-1.3
4,722,715	+				-0.3
4,722,726	+				-0.5
4,722,734	-				+0.7
4,722,743	-				-2.6
4,722,798	+		GFF4722	0.17	+1.0
4,722,800	+		GFF4722	0.18	-0.2
4,722,800	+		GFF4722	0.18	-0.1
4,722,800	+		GFF4722	0.18	-1.2
4,722,808	-		GFF4722	0.20	-1.8
4,722,810	+		GFF4722	0.21	-1.9
4,722,810	+		GFF4722	0.21	-2.5
4,722,810	+		GFF4722	0.21	-0.8
4,722,810	+		GFF4722	0.21	+0.7
4,722,810	+		GFF4722	0.21	+1.0
4,722,818	-		GFF4722	0.23	-0.1
4,722,818	-		GFF4722	0.23	+0.1
4,722,818	-		GFF4722	0.23	-1.1
4,722,818	-		GFF4722	0.23	-1.7
4,722,818	-		GFF4722	0.23	-0.3
4,722,818	-		GFF4722	0.23	+1.3
4,722,818	-		GFF4722	0.23	+0.9
4,722,818	-		GFF4722	0.23	+1.4
4,722,837	-		GFF4722	0.28	+0.2
4,722,850	+		GFF4722	0.32	-0.0
4,722,850	+		GFF4722	0.32	-0.5
4,722,857	+		GFF4722	0.34	-2.1
4,722,858	+		GFF4722	0.34	+0.5
4,722,858	+		GFF4722	0.34	-0.4
4,722,866	-		GFF4722	0.37	+0.9
4,722,867	+		GFF4722	0.37	+0.0
4,722,872	+		GFF4722	0.39	-0.3
4,722,882	+		GFF4722	0.41	+0.7
4,722,882	+		GFF4722	0.41	-1.9
4,722,884	-		GFF4722	0.42	+0.8
4,722,889	-		GFF4722	0.43	-0.1
4,722,935	+		GFF4722	0.57	-0.3
4,722,943	-		GFF4722	0.59	+0.1
4,722,954	+		GFF4722	0.62	+0.1
4,722,982	-		GFF4722	0.70	-0.4
4,722,995	+		GFF4722	0.74	+0.5
4,722,995	+		GFF4722	0.74	+0.9
4,722,995	+		GFF4722	0.74	+0.8
4,722,995	+		GFF4722	0.74	+0.4
4,722,995	+		GFF4722	0.74	-1.1
4,723,000	+		GFF4722	0.75	-0.3
4,723,003	-		GFF4722	0.76	-1.2
4,723,003	-		GFF4722	0.76	+1.0
4,723,003	-		GFF4722	0.76	-0.4
4,723,005	+		GFF4722	0.77	-0.1
4,723,005	+		GFF4722	0.77	+0.1
4,723,008	+		GFF4722	0.78	-0.1
4,723,013	-		GFF4722	0.79	+0.4
4,723,018	-		GFF4722	0.80	-0.3
4,723,031	-		GFF4722	0.84	+0.7
4,723,039	-		GFF4722	0.86	-0.0
4,723,039	-		GFF4722	0.86	-0.5
4,723,064	+				-1.5
4,723,065	-				-1.5
4,723,075	+				-0.1
4,723,085	+				-0.1
4,723,085	+				+0.1
4,723,085	+				+0.3
4,723,093	-				+0.2
4,723,117	+				-0.5
4,723,124	+				-3.0
4,723,124	+				-0.2
4,723,124	+				-0.5
4,723,124	+				+0.8
4,723,124	+				+0.5
4,723,132	-				+0.7
4,723,132	-				-2.2
4,723,132	-				-0.5
4,723,132	-				-0.1
4,723,132	-				+0.9
4,723,132	-				+0.6
4,723,132	-				-1.5
4,723,137	+				-1.1
4,723,141	+				-0.1
4,723,141	+				-0.4
4,723,145	-				-0.1
4,723,149	-				+0.4
4,723,167	-				-0.1
4,723,172	-				-0.3
4,723,172	-				-0.1
4,723,172	-				+0.2
4,723,180	-				+0.4
4,723,192	+				+1.0
4,723,228	+		GFF4723	0.22	-0.0
4,723,238	-		GFF4723	0.26	-1.1
4,723,262	-		GFF4723	0.34	-0.0
4,723,273	+		GFF4723	0.38	-0.1
4,723,279	+		GFF4723	0.40	-0.1
4,723,282	+		GFF4723	0.41	+0.5
4,723,290	-		GFF4723	0.44	-0.8
4,723,304	+		GFF4723	0.49	+0.3
4,723,310	-		GFF4723	0.51	+0.0
4,723,312	-		GFF4723	0.52	+0.3
4,723,338	+		GFF4723	0.61	-0.5
4,723,338	+		GFF4723	0.61	-1.7
4,723,338	+		GFF4723	0.61	+0.3
4,723,338	+		GFF4723	0.61	+0.2
4,723,338	+		GFF4723	0.61	-0.3
4,723,338	+		GFF4723	0.61	+0.1
4,723,338	+		GFF4723	0.61	-1.2
4,723,339	+		GFF4723	0.61	-0.3
4,723,346	-		GFF4723	0.64	+0.8
4,723,346	-		GFF4723	0.64	+0.1
4,723,348	+		GFF4723	0.64	-0.6
4,723,355	+		GFF4723	0.67	+0.1
4,723,355	+		GFF4723	0.67	+0.2
4,723,363	-		GFF4723	0.69	+0.5
4,723,363	-		GFF4723	0.69	+1.0
4,723,371	-		GFF4723	0.72	-0.2
4,723,390	+		GFF4723	0.79	-0.5
4,723,390	+		GFF4723	0.79	+0.3
4,723,450	+				+0.5
4,723,472	-				+0.6
4,723,480	+				+0.4
4,723,480	+				+0.8
4,723,480	+				-0.7
4,723,480	+				+0.9
4,723,480	+				+0.3
4,723,480	+				-0.5
4,723,480	+				-0.8
4,723,480	+				+0.3
4,723,485	+				-0.1
4,723,488	-				-0.4
4,723,488	-				+1.5
4,723,488	-				-0.1
4,723,488	-				-0.9
4,723,488	-				-0.0
4,723,488	-				-0.7
4,723,490	+				-0.1
4,723,490	+				-1.3
4,723,513	+				-1.0
4,723,513	+				-0.0
4,723,521	-		GFF4724	0.12	-0.3
4,723,527	-		GFF4724	0.13	+0.2
4,723,540	-		GFF4724	0.16	+0.1
4,723,553	-		GFF4724	0.19	+0.8
4,723,553	-		GFF4724	0.19	-0.0
4,723,560	+		GFF4724	0.21	-1.7
4,723,573	+		GFF4724	0.24	+0.9
4,723,573	+		GFF4724	0.24	+0.4
4,723,573	+		GFF4724	0.24	-0.6
4,723,573	+		GFF4724	0.24	-0.6
4,723,573	+		GFF4724	0.24	+0.7
4,723,573	+		GFF4724	0.24	-0.9
4,723,573	+		GFF4724	0.24	+0.5
4,723,573	+		GFF4724	0.24	+0.7
4,723,573	+		GFF4724	0.24	-1.0
4,723,581	-		GFF4724	0.26	+0.2
4,723,581	-		GFF4724	0.26	+1.5
4,723,581	-		GFF4724	0.26	+0.9
4,723,581	-		GFF4724	0.26	-0.3
4,723,581	-		GFF4724	0.26	-0.6
4,723,581	-		GFF4724	0.26	+1.5
4,723,609	+		GFF4724	0.32	+0.2
4,723,660	-		GFF4724	0.44	-2.0
4,723,661	-		GFF4724	0.44	-0.3
4,723,676	+		GFF4724	0.47	-1.9
4,723,709	+		GFF4724	0.55	-2.0
4,723,722	-		GFF4724	0.58	+0.1
4,723,722	-		GFF4724	0.58	+0.6
4,723,724	+		GFF4724	0.58	-2.2
4,723,824	+		GFF4724	0.81	+0.1
4,723,824	+		GFF4724	0.81	+0.3
4,723,832	-		GFF4724	0.83	-0.2
4,723,867	+				+0.4
4,723,870	+				-0.2
4,723,872	+				-1.0
4,723,875	-				-0.5
4,723,880	-				+0.1
4,723,898	+				-0.4
4,723,913	-				-1.8
4,723,930	+				+0.1
4,723,930	+				+0.8
4,723,930	+				+0.6
4,723,930	+				+0.8
4,723,930	+				-1.0
4,723,930	+				-0.3
4,723,931	-				-1.2
4,723,932	+				+0.4
4,723,935	+				-2.3
4,723,938	-				-0.6
4,723,938	-				-1.7
4,723,938	-				+0.9
4,723,938	-				+1.4
4,723,938	-				+0.7
4,723,938	-				+0.4
4,723,938	-				+0.5
4,723,943	-				-0.1
4,723,965	+				+0.7
4,723,965	+				+0.0
4,723,973	-				+0.2
4,723,979	+				-0.2
4,724,012	+				+0.0
4,724,091	-				+0.9
4,724,122	+				-0.6
4,724,122	+				-0.5
4,724,122	+				+1.1
4,724,292	+				+0.1
4,724,353	-				-0.5
4,724,386	+				-0.7
4,724,411	+				-0.3
4,724,419	-				-1.8
4,724,433	+				-0.9
4,724,433	+				-1.3
4,724,435	+				-1.2
4,724,441	-				+1.1
4,724,466	+				+0.8
4,724,481	-				-1.2
4,724,482	+				+0.3
4,724,482	-				-0.2
4,724,490	-				-1.2
4,724,495	-				-0.2
4,724,497	+				+0.3
4,724,497	+				+0.6
4,724,497	+				+0.4
4,724,497	+				+0.5
4,724,505	-				-0.1
4,724,505	-				+0.1
4,724,505	-				+0.5
4,724,533	+				+0.3
4,724,533	+				+0.1
4,724,533	+				-1.7
4,724,541	+				+0.2
4,724,555	+				+0.4
4,724,556	-				-1.9
4,724,556	-				+0.1
4,724,556	-				-0.9
4,724,556	-				-1.3
4,724,562	-				+0.4
4,724,572	+				-0.7
4,724,580	-				-0.2
4,724,609	+				-2.8
4,724,711	+		GFF4725	0.29	+0.1
4,724,719	+		GFF4725	0.32	-0.0
4,724,719	-		GFF4725	0.32	-1.0
4,724,719	-		GFF4725	0.32	-1.7
4,724,722	-		GFF4725	0.33	-0.1
4,724,765	-		GFF4725	0.46	-0.0
4,724,765	-		GFF4725	0.46	+0.8
4,724,766	-		GFF4725	0.46	+1.1
4,724,766	-		GFF4725	0.46	+1.0