Strain Fitness in Sphingobium sp. HT1-2 around GFF4709

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,709,960	-				-0.8
4,709,978	+				+0.4
4,709,994	+				-0.5
4,709,994	+				+1.4
4,710,002	-				+0.8
4,710,028	-				+1.2
4,710,037	+				+0.0
4,710,041	-				+0.1
4,710,041	-				+0.6
4,710,045	-				+0.8
4,710,045	-				+0.4
4,710,045	-				+1.3
4,710,141	+		GFF4708	0.18	-0.3
4,710,148	+		GFF4708	0.18	-1.6
4,710,148	+		GFF4708	0.18	-1.1
4,710,148	+		GFF4708	0.18	-0.8
4,710,148	+		GFF4708	0.18	+0.0
4,710,156	-		GFF4708	0.19	+0.3
4,710,156	-		GFF4708	0.19	-0.7
4,710,156	-		GFF4708	0.19	-1.0
4,710,156	-		GFF4708	0.19	+0.5
4,710,156	-		GFF4708	0.19	-0.3
4,710,165	-		GFF4708	0.20	+0.2
4,710,167	-		GFF4708	0.20	-0.6
4,710,231	+		GFF4708	0.27	+1.4
4,710,257	-		GFF4708	0.29	-1.4
4,710,258	-		GFF4708	0.30	+0.2
4,710,263	-		GFF4708	0.30	+0.4
4,710,263	-		GFF4708	0.30	-1.2
4,710,277	+		GFF4708	0.31	+0.0
4,710,277	+		GFF4708	0.31	+0.5
4,710,282	+		GFF4708	0.32	+0.5
4,710,282	+		GFF4708	0.32	-2.4
4,710,282	+		GFF4708	0.32	-2.0
4,710,282	+		GFF4708	0.32	-0.7
4,710,285	-		GFF4708	0.32	+1.4
4,710,290	-		GFF4708	0.33	-0.9
4,710,333	-		GFF4708	0.37	-1.2
4,710,355	-		GFF4708	0.39	-2.0
4,710,363	+		GFF4708	0.40	+0.4
4,710,371	-		GFF4708	0.41	+1.3
4,710,375	+		GFF4708	0.42	+0.6
4,710,395	+		GFF4708	0.44	-0.2
4,710,403	-		GFF4708	0.44	+0.4
4,710,439	-		GFF4708	0.48	+0.9
4,710,448	+		GFF4708	0.49	-0.0
4,710,454	-		GFF4708	0.50	+0.9
4,710,509	+		GFF4708	0.55	+0.6
4,710,509	+		GFF4708	0.55	+0.9
4,710,509	+		GFF4708	0.55	-1.6
4,710,509	+		GFF4708	0.55	-0.0
4,710,509	+		GFF4708	0.55	-0.4
4,710,509	+		GFF4708	0.55	-0.0
4,710,517	-		GFF4708	0.56	-2.8
4,710,517	-		GFF4708	0.56	+0.9
4,710,517	-		GFF4708	0.56	+0.3
4,710,517	-		GFF4708	0.56	-0.5
4,710,517	-		GFF4708	0.56	-2.8
4,710,517	-		GFF4708	0.56	-0.4
4,710,522	-		GFF4708	0.57	-0.2
4,710,522	-		GFF4708	0.57	-0.4
4,710,548	+		GFF4708	0.59	+0.7
4,710,548	+		GFF4708	0.59	+1.0
4,710,548	+		GFF4708	0.59	-0.4
4,710,548	+		GFF4708	0.59	+0.7
4,710,556	-		GFF4708	0.60	-0.8
4,710,556	-		GFF4708	0.60	-0.3
4,710,556	-		GFF4708	0.60	+0.8
4,710,556	-		GFF4708	0.60	+0.2
4,710,558	-		GFF4708	0.60	+0.7
4,710,569	+		GFF4708	0.61	-1.1
4,710,572	-		GFF4708	0.62	-1.4
4,710,575	-		GFF4708	0.62	+0.2
4,710,577	-		GFF4708	0.62	+0.2
4,710,579	+		GFF4708	0.62	+0.0
4,710,579	+		GFF4708	0.62	-1.1
4,710,579	+		GFF4708	0.62	-1.6
4,710,579	+		GFF4708	0.62	+0.1
4,710,579	+		GFF4708	0.62	+0.4
4,710,587	-		GFF4708	0.63	+1.0
4,710,587	-		GFF4708	0.63	+0.2
4,710,587	-		GFF4708	0.63	+0.5
4,710,587	-		GFF4708	0.63	-0.7
4,710,587	-		GFF4708	0.63	-0.7
4,710,587	-		GFF4708	0.63	+1.4
4,710,614	+		GFF4708	0.66	+0.4
4,710,632	-		GFF4708	0.68	+1.1
4,710,668	+		GFF4708	0.71	-0.3
4,710,668	+		GFF4708	0.71	-0.8
4,710,668	-		GFF4708	0.71	-1.1
4,710,676	-		GFF4708	0.72	+0.1
4,710,676	-		GFF4708	0.72	+1.7
4,710,697	+		GFF4708	0.74	+0.5
4,710,718	+		GFF4708	0.77	+0.1
4,710,718	+		GFF4708	0.77	-0.3
4,710,718	+		GFF4708	0.77	-0.5
4,710,721	-		GFF4708	0.77	+1.5
4,710,721	-		GFF4708	0.77	-1.0
4,710,726	-		GFF4708	0.77	-1.4
4,710,726	-		GFF4708	0.77	-0.8
4,710,726	-		GFF4708	0.77	+0.5
4,710,726	-		GFF4708	0.77	-0.4
4,710,726	-		GFF4708	0.77	-1.8
4,710,728	-		GFF4708	0.78	-0.0
4,710,739	-		GFF4708	0.79	-0.2
4,710,775	+		GFF4708	0.82	-0.0
4,710,775	+		GFF4708	0.82	-0.6
4,710,775	+		GFF4708	0.82	-1.0
4,710,775	+		GFF4708	0.82	+0.1
4,710,775	+		GFF4708	0.82	-0.6
4,710,775	+		GFF4708	0.82	-0.8
4,710,775	+		GFF4708	0.82	-2.0
4,710,775	+		GFF4708	0.82	+0.5
4,710,780	+		GFF4708	0.83	+0.6
4,710,783	-		GFF4708	0.83	+0.9
4,710,783	-		GFF4708	0.83	-0.5
4,710,783	-		GFF4708	0.83	+1.1
4,710,783	-		GFF4708	0.83	+0.7
4,710,783	-		GFF4708	0.83	-1.0
4,710,783	-		GFF4708	0.83	-0.8
4,710,797	+		GFF4708	0.85	-0.2
4,710,805	-		GFF4708	0.85	-0.5
4,710,831	+		GFF4708	0.88	+0.1
4,710,843	+		GFF4708	0.89	+0.7
4,710,843	+		GFF4708	0.89	+1.0
4,710,843	+		GFF4708	0.89	+1.1
4,710,851	-				+0.4
4,710,851	-				+0.4
4,710,851	-				+0.0
4,710,857	-				-2.3
4,710,926	+				-1.6
4,710,934	-				+0.8
4,710,936	+				+0.7
4,710,944	+				+0.4
4,710,944	-				-2.2
4,710,949	-				-0.0
4,710,951	-				+0.8
4,710,952	-				-0.1
4,710,952	-				-0.3
4,710,953	+				-0.5
4,710,953	+				-1.6
4,710,953	+				-1.5
4,710,953	+				+1.4
4,710,953	+				-0.9
4,710,953	+				+0.8
4,710,961	-				+0.6
4,710,961	-				+0.6
4,710,962	-				+0.5
4,710,962	-				+0.8
4,710,979	-				-3.1
4,710,982	+				-2.8
4,710,984	-				-1.1
4,711,009	+		GFF4709	0.13	+0.6
4,711,019	+		GFF4709	0.15	+0.0
4,711,019	+		GFF4709	0.15	-0.6
4,711,022	-		GFF4709	0.16	-1.7
4,711,027	-		GFF4709	0.17	-1.6
4,711,027	-		GFF4709	0.17	-0.5
4,711,027	-		GFF4709	0.17	+0.3
4,711,032	+		GFF4709	0.18	-0.3
4,711,032	+		GFF4709	0.18	+1.3
4,711,032	+		GFF4709	0.18	-0.4
4,711,040	-		GFF4709	0.20	+0.0
4,711,056	+		GFF4709	0.24	-0.0
4,711,099	+		GFF4709	0.35	+0.8
4,711,099	+		GFF4709	0.35	+0.4
4,711,107	-		GFF4709	0.37	-0.7
4,711,107	-		GFF4709	0.37	-1.2
4,711,109	+		GFF4709	0.37	+0.1
4,711,117	-		GFF4709	0.39	+0.8
4,711,118	-		GFF4709	0.39	-0.0
4,711,119	-		GFF4709	0.40	-1.7
4,711,128	+		GFF4709	0.42	+0.6
4,711,128	+		GFF4709	0.42	+0.1
4,711,185	+		GFF4709	0.56	-0.4
4,711,188	-		GFF4709	0.56	-0.5
4,711,198	-		GFF4709	0.59	+1.6
4,711,198	-		GFF4709	0.59	-0.8
4,711,210	-		GFF4709	0.62	+0.2
4,711,215	+		GFF4709	0.63	+0.8
4,711,215	+		GFF4709	0.63	+1.1
4,711,223	-		GFF4709	0.65	+0.8
4,711,223	-		GFF4709	0.65	-1.6
4,711,235	-		GFF4709	0.68	-1.6
4,711,237	+		GFF4709	0.68	-0.2
4,711,263	+		GFF4709	0.75	+0.2
4,711,279	+		GFF4709	0.79	+0.2
4,711,287	-		GFF4709	0.81	+0.6
4,711,287	-		GFF4709	0.81	-1.0
4,711,299	-		GFF4709	0.83	+0.8
4,711,301	+		GFF4709	0.84	-0.7
4,711,315	+		GFF4709	0.87	-0.5
4,711,410	-				-2.0
4,711,421	-				-0.0
4,711,451	+		GFF4710	0.11	-0.6
4,711,459	+		GFF4710	0.12	+0.7
4,711,478	+		GFF4710	0.15	+0.3
4,711,478	+		GFF4710	0.15	-1.5
4,711,478	+		GFF4710	0.15	-0.9
4,711,481	-		GFF4710	0.16	+0.8
4,711,486	-		GFF4710	0.17	+1.3
4,711,486	-		GFF4710	0.17	+1.9
4,711,501	-		GFF4710	0.19	-0.8
4,711,526	+		GFF4710	0.23	-1.0
4,711,526	+		GFF4710	0.23	-0.6
4,711,526	+		GFF4710	0.23	-0.6
4,711,526	+		GFF4710	0.23	-2.3
4,711,546	+		GFF4710	0.26	-0.0
4,711,562	+		GFF4710	0.28	+0.3
4,711,562	+		GFF4710	0.28	+0.3
4,711,619	-		GFF4710	0.37	+0.4
4,711,630	+		GFF4710	0.39	-2.0
4,711,630	+		GFF4710	0.39	+0.4
4,711,638	-		GFF4710	0.40	+0.1
4,711,659	+		GFF4710	0.44	-1.6
4,711,680	-		GFF4710	0.47	-1.5
4,711,697	-		GFF4710	0.50	-0.4
4,711,697	-		GFF4710	0.50	-0.1
4,711,729	-		GFF4710	0.55	+1.1
4,711,735	+		GFF4710	0.56	-1.9
4,711,743	-		GFF4710	0.57	+0.5
4,711,746	+		GFF4710	0.57	-2.1
4,711,754	+		GFF4710	0.59	-1.5
4,711,771	-		GFF4710	0.61	-1.1
4,711,840	-		GFF4710	0.72	+0.6
4,711,847	-		GFF4710	0.73	+1.3
4,711,886	-		GFF4710	0.79	-0.9
4,711,889	-		GFF4710	0.80	+0.9
4,711,899	-		GFF4710	0.81	+0.6
4,711,927	+		GFF4710	0.86	-1.4
4,711,938	+		GFF4710	0.87	-1.6
4,711,943	+		GFF4710	0.88	-0.5
4,711,943	+		GFF4710	0.88	-0.6
4,711,943	+		GFF4710	0.88	-0.7
4,711,949	-		GFF4710	0.89	-1.6
4,711,951	-		GFF4710	0.89	+0.6
4,711,951	-		GFF4710	0.89	-0.8
4,711,951	-		GFF4710	0.89	+0.0
4,711,958	-				+0.0
4,711,958	-				-2.2
4,711,958	-				+1.4
4,711,958	-				-1.4
4,711,958	-				+1.0
4,711,958	-				+0.2
4,711,958	-				+0.2
4,711,958	-				+0.6
4,711,958	-				+0.8
4,711,958	-				+0.7
4,711,958	-				+1.0
4,711,958	-				+1.4
4,711,958	-				+0.1
4,711,993	-				-0.9
4,712,065	+				-1.6
4,712,078	+				+1.5
4,712,086	-				+0.9
4,712,102	+				-0.5
4,712,143	+				+0.8
4,712,143	+				+1.3
4,712,143	+				+0.6
4,712,143	+				+0.9
4,712,151	-				+1.5
4,712,151	-				+0.7
4,712,151	-				+0.0
4,712,153	+				-1.5
4,712,166	-				-0.2
4,712,176	-				-0.1
4,712,176	-				-0.5
4,712,186	-				+1.1
4,712,189	+				-0.6
4,712,189	+				+0.7
4,712,189	+				+0.1
4,712,191	-				-0.2
4,712,196	+				-2.3
4,712,224	+		GFF4711	0.10	-0.9
4,712,231	+		GFF4711	0.12	-0.5
4,712,231	+		GFF4711	0.12	+0.1
4,712,231	+		GFF4711	0.12	-0.3
4,712,232	-		GFF4711	0.12	+0.5
4,712,232	-		GFF4711	0.12	-0.5
4,712,234	-		GFF4711	0.12	+0.6
4,712,239	-		GFF4711	0.13	-0.3
4,712,255	-		GFF4711	0.17	+0.2
4,712,273	-		GFF4711	0.21	+0.4
4,712,273	-		GFF4711	0.21	-0.9
4,712,283	+		GFF4711	0.23	-0.5
4,712,289	-		GFF4711	0.24	+0.7
4,712,300	+		GFF4711	0.26	-0.1
4,712,302	+		GFF4711	0.27	-0.5
4,712,302	+		GFF4711	0.27	-0.1
4,712,302	+		GFF4711	0.27	-0.8
4,712,302	+		GFF4711	0.27	+0.2
4,712,308	-		GFF4711	0.28	-2.1
4,712,310	-		GFF4711	0.28	-0.5
4,712,310	-		GFF4711	0.28	-0.9
4,712,310	-		GFF4711	0.28	+0.8
4,712,310	-		GFF4711	0.28	-2.2
4,712,329	+		GFF4711	0.32	+0.4
4,712,344	-		GFF4711	0.35	-0.5
4,712,348	+		GFF4711	0.36	+1.1
4,712,359	-		GFF4711	0.39	-0.9