Strain Fitness in Sphingobium sp. HT1-2 around GFF4704

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,704,754	+				-0.1
4,704,759	+				-1.6
4,704,762	-				+0.2
4,704,762	-				+0.4
4,704,762	-				-0.8
4,704,762	-				+1.7
4,704,767	-				-0.2
4,704,767	-				-2.3
4,704,767	-				+1.9
4,704,771	+				+0.0
4,704,774	-				-0.1
4,704,799	+				-0.2
4,704,827	-				-1.2
4,704,833	+				+0.9
4,704,833	+				+0.8
4,704,838	+				-2.0
4,704,841	-				+0.4
4,704,854	+		GFF4703	0.11	+0.1
4,704,857	+		GFF4703	0.12	+0.1
4,704,862	+		GFF4703	0.12	+0.2
4,704,862	+		GFF4703	0.12	-0.1
4,704,862	-		GFF4703	0.12	-0.7
4,704,873	+		GFF4703	0.13	+1.2
4,704,928	-		GFF4703	0.20	+0.7
4,704,947	+		GFF4703	0.22	-2.1
4,704,963	-		GFF4703	0.24	-2.2
4,704,965	-		GFF4703	0.24	+2.3
4,704,993	+		GFF4703	0.27	+1.3
4,705,003	-		GFF4703	0.28	+0.4
4,705,006	-		GFF4703	0.29	+0.1
4,705,016	-		GFF4703	0.30	-0.7
4,705,035	-		GFF4703	0.32	+0.8
4,705,037	+		GFF4703	0.32	-0.6
4,705,037	+		GFF4703	0.32	+1.0
4,705,037	+		GFF4703	0.32	+0.7
4,705,043	+		GFF4703	0.33	+0.3
4,705,043	+		GFF4703	0.33	-0.4
4,705,045	-		GFF4703	0.33	+0.4
4,705,045	-		GFF4703	0.33	-0.6
4,705,045	-		GFF4703	0.33	+0.2
4,705,051	-		GFF4703	0.34	+0.6
4,705,051	-		GFF4703	0.34	+0.3
4,705,063	+		GFF4703	0.35	-1.6
4,705,063	+		GFF4703	0.35	-0.0
4,705,063	+		GFF4703	0.35	-1.2
4,705,063	+		GFF4703	0.35	-0.4
4,705,071	-		GFF4703	0.36	+0.1
4,705,071	-		GFF4703	0.36	+0.3
4,705,071	-		GFF4703	0.36	+0.8
4,705,071	-		GFF4703	0.36	-0.5
4,705,071	-		GFF4703	0.36	+0.6
4,705,071	-		GFF4703	0.36	-0.2
4,705,083	+		GFF4703	0.37	-1.6
4,705,084	-		GFF4703	0.37	-0.6
4,705,089	-		GFF4703	0.38	-0.1
4,705,089	-		GFF4703	0.38	-1.7
4,705,096	-		GFF4703	0.39	-0.1
4,705,117	+		GFF4703	0.41	+1.2
4,705,119	+		GFF4703	0.41	+1.0
4,705,119	-		GFF4703	0.41	+0.4
4,705,134	+		GFF4703	0.43	-0.4
4,705,142	-		GFF4703	0.44	+0.5
4,705,176	-		GFF4703	0.48	-0.6
4,705,183	+		GFF4703	0.49	+0.4
4,705,257	+		GFF4703	0.57	+0.4
4,705,291	-		GFF4703	0.61	+0.7
4,705,320	-		GFF4703	0.64	+1.3
4,705,325	-		GFF4703	0.65	+0.8
4,705,325	-		GFF4703	0.65	-2.4
4,705,325	-		GFF4703	0.65	+0.9
4,705,354	+		GFF4703	0.68	+0.1
4,705,366	+		GFF4703	0.69	+0.1
4,705,384	+		GFF4703	0.71	-0.8
4,705,402	-		GFF4703	0.73	+0.5
4,705,412	-		GFF4703	0.75	+0.2
4,705,412	-		GFF4703	0.75	+1.1
4,705,418	+		GFF4703	0.75	-0.8
4,705,418	+		GFF4703	0.75	-1.8
4,705,426	-		GFF4703	0.76	+0.5
4,705,426	-		GFF4703	0.76	+0.5
4,705,431	-		GFF4703	0.77	+1.1
4,705,440	+		GFF4703	0.78	-1.1
4,705,440	+		GFF4703	0.78	+0.9
4,705,440	+		GFF4703	0.78	+1.4
4,705,444	+		GFF4703	0.78	+0.6
4,705,444	+		GFF4703	0.78	+1.4
4,705,452	-		GFF4703	0.79	-1.6
4,705,463	-		GFF4703	0.80	-0.5
4,705,463	-		GFF4703	0.80	-2.6
4,705,465	-		GFF4703	0.81	+0.8
4,705,481	+		GFF4703	0.82	+2.3
4,705,488	+		GFF4703	0.83	-0.1
4,705,488	+		GFF4703	0.83	-0.8
4,705,488	+		GFF4703	0.83	+0.0
4,705,488	+		GFF4703	0.83	+0.0
4,705,496	-		GFF4703	0.84	+0.1
4,705,496	-		GFF4703	0.84	+1.1
4,705,540	-		GFF4703	0.89	+1.6
4,705,662	+				-0.0
4,705,662	+				-1.9
4,705,670	-				-2.0
4,705,670	-				+0.4
4,705,670	-				+2.0
4,705,684	+				+1.4
4,705,684	+				-1.8
4,705,684	+				+1.2
4,705,684	+				-0.9
4,705,684	+				-0.5
4,705,684	+				+0.7
4,705,684	+				+1.3
4,705,684	+				-1.0
4,705,684	+				-0.3
4,705,684	+				-1.2
4,705,684	+				+0.8
4,705,692	-				-1.8
4,705,692	-				-0.2
4,705,692	-				+0.8
4,705,692	-				-0.4
4,705,694	+				+0.8
4,705,696	+				-0.0
4,705,699	+				+1.1
4,705,702	-				+1.2
4,705,735	+				+0.1
4,705,736	+				+1.4
4,705,740	+				-0.3
4,705,743	+				-1.8
4,705,743	+				-0.9
4,705,743	+				+0.4
4,705,743	+				+0.3
4,705,760	-				-0.3
4,705,768	-				-0.8
4,705,768	-				+1.3
4,705,768	-				+0.1
4,705,768	-				-1.5
4,705,772	+				-1.6
4,705,780	+				+0.1
4,705,780	+				-1.1
4,705,781	+				+0.0
4,705,788	-		GFF4704	0.10	-0.1
4,705,789	-		GFF4704	0.10	+0.1
4,705,789	-		GFF4704	0.10	-1.8
4,705,790	+		GFF4704	0.10	-1.5
4,705,794	-		GFF4704	0.11	-1.9
4,705,806	-		GFF4704	0.12	+0.3
4,705,808	-		GFF4704	0.13	-0.6
4,705,816	-		GFF4704	0.14	+0.9
4,705,833	+		GFF4704	0.16	+0.8
4,705,841	-		GFF4704	0.16	-0.9
4,705,841	-		GFF4704	0.16	+0.6
4,705,845	-		GFF4704	0.17	+0.2
4,705,846	-		GFF4704	0.17	-0.2
4,705,848	+		GFF4704	0.17	-0.7
4,705,856	-		GFF4704	0.18	-0.6
4,705,856	-		GFF4704	0.18	+1.0
4,705,856	-		GFF4704	0.18	+1.4
4,705,865	-		GFF4704	0.19	-0.4
4,705,867	+		GFF4704	0.19	+0.4
4,705,878	+		GFF4704	0.21	+0.6
4,705,886	-		GFF4704	0.22	-0.8
4,705,890	-		GFF4704	0.22	+0.3
4,705,935	+		GFF4704	0.27	-1.1
4,705,935	+		GFF4704	0.27	-0.5
4,705,943	-		GFF4704	0.28	-1.5
4,705,943	-		GFF4704	0.28	+0.3
4,705,949	-		GFF4704	0.29	-1.6
4,706,008	-		GFF4704	0.36	+0.9
4,706,011	-		GFF4704	0.36	+0.9
4,706,026	+		GFF4704	0.38	+0.5
4,706,026	+		GFF4704	0.38	-1.2
4,706,026	+		GFF4704	0.38	-0.0
4,706,026	+		GFF4704	0.38	+0.4
4,706,026	+		GFF4704	0.38	-2.0
4,706,026	+		GFF4704	0.38	-0.1
4,706,034	-		GFF4704	0.39	+0.4
4,706,034	-		GFF4704	0.39	+1.1
4,706,034	-		GFF4704	0.39	-0.0
4,706,034	-		GFF4704	0.39	+0.1
4,706,034	-		GFF4704	0.39	+0.9
4,706,034	-		GFF4704	0.39	+1.2
4,706,034	-		GFF4704	0.39	+0.8
4,706,034	-		GFF4704	0.39	-0.2
4,706,034	-		GFF4704	0.39	+0.3
4,706,043	-		GFF4704	0.40	+0.4
4,706,043	-		GFF4704	0.40	+1.7
4,706,045	+		GFF4704	0.40	-0.0
4,706,045	+		GFF4704	0.40	-0.8
4,706,048	-		GFF4704	0.41	+0.5
4,706,053	-		GFF4704	0.41	-1.1
4,706,053	-		GFF4704	0.41	-0.1
4,706,053	-		GFF4704	0.41	+1.1
4,706,053	-		GFF4704	0.41	+0.4
4,706,053	-		GFF4704	0.41	-1.7
4,706,053	-		GFF4704	0.41	+0.5
4,706,058	-		GFF4704	0.42	-2.3
4,706,075	-		GFF4704	0.44	-0.5
4,706,083	+		GFF4704	0.45	-2.1
4,706,083	+		GFF4704	0.45	+0.9
4,706,083	+		GFF4704	0.45	+0.3
4,706,083	+		GFF4704	0.45	+0.1
4,706,091	-		GFF4704	0.46	+0.4
4,706,091	-		GFF4704	0.46	+0.3
4,706,092	-		GFF4704	0.46	-0.1
4,706,110	-		GFF4704	0.48	+0.7
4,706,138	+		GFF4704	0.51	+1.4
4,706,138	+		GFF4704	0.51	+0.7
4,706,146	-		GFF4704	0.52	-0.4
4,706,146	-		GFF4704	0.52	+1.6
4,706,148	+		GFF4704	0.52	+0.1
4,706,149	-		GFF4704	0.52	+1.5
4,706,151	-		GFF4704	0.53	-1.7
4,706,182	+		GFF4704	0.56	-1.3
4,706,185	-		GFF4704	0.57	+0.7
4,706,190	-		GFF4704	0.57	-0.0
4,706,206	-		GFF4704	0.59	-1.2
4,706,209	+		GFF4704	0.59	-0.9
4,706,219	+		GFF4704	0.60	+0.2
4,706,222	-		GFF4704	0.61	-1.2
4,706,226	+		GFF4704	0.61	-2.1
4,706,240	+		GFF4704	0.63	-2.3
4,706,240	+		GFF4704	0.63	-1.0
4,706,240	+		GFF4704	0.63	-0.9
4,706,248	-		GFF4704	0.64	+0.2
4,706,248	-		GFF4704	0.64	+1.1
4,706,257	+		GFF4704	0.65	+0.3
4,706,265	-		GFF4704	0.66	-0.5
4,706,265	-		GFF4704	0.66	-1.6
4,706,288	-		GFF4704	0.69	+0.1
4,706,290	+		GFF4704	0.69	-0.5
4,706,291	-		GFF4704	0.69	-0.2
4,706,298	-		GFF4704	0.70	+0.3
4,706,334	-		GFF4704	0.74	+1.4
4,706,336	-		GFF4704	0.74	+1.2
4,706,346	-		GFF4704	0.75	-0.1
4,706,359	-		GFF4704	0.77	+0.1
4,706,464	-		GFF4704	0.89	-0.9
4,706,497	+				+1.3
4,706,497	+				-0.1
4,706,502	+				-0.0
4,706,507	+				-1.6
4,706,512	+				-0.0
4,706,515	-				+0.4
4,706,520	-				+1.3
4,706,522	-				+0.9
4,706,524	+				-0.2
4,706,524	+				+0.5
4,706,532	-				+1.0
4,706,532	-				-1.9
4,706,532	-				+0.1
4,706,552	-				-0.0
4,706,559	+				-2.7
4,706,567	-				+0.1
4,706,608	-				+0.2
4,706,663	-		GFF4705	0.15	-0.0
4,706,680	-		GFF4705	0.17	+0.0
4,706,688	-		GFF4705	0.19	-0.7
4,706,703	+		GFF4705	0.21	-0.3
4,706,711	-		GFF4705	0.22	-1.6
4,706,711	-		GFF4705	0.22	+0.7
4,706,739	+		GFF4705	0.26	+0.5
4,706,803	-		GFF4705	0.35	+0.5
4,706,813	+		GFF4705	0.36	-0.1
4,706,821	-		GFF4705	0.37	+0.6
4,706,851	+		GFF4705	0.41	+0.2
4,706,865	-		GFF4705	0.43	-0.3
4,706,865	-		GFF4705	0.43	-1.0
4,706,874	+		GFF4705	0.44	-1.1
4,706,875	-		GFF4705	0.45	-0.2
4,706,877	-		GFF4705	0.45	+0.3
4,706,887	-		GFF4705	0.46	-0.2
4,706,948	+		GFF4705	0.55	+1.9
4,706,973	-		GFF4705	0.58	+0.8
4,706,978	+		GFF4705	0.59	+1.1
4,707,026	+		GFF4705	0.66	-0.2
4,707,026	+		GFF4705	0.66	-1.0
4,707,026	+		GFF4705	0.66	+0.5
4,707,027	+		GFF4705	0.66	+0.4
4,707,034	-		GFF4705	0.67	-1.0
4,707,034	-		GFF4705	0.67	+0.2
4,707,040	+		GFF4705	0.68	-0.6
4,707,049	+		GFF4705	0.69	+0.8
4,707,051	+		GFF4705	0.69	-0.5
4,707,057	-		GFF4705	0.70	+0.7
4,707,057	-		GFF4705	0.70	+0.8
4,707,059	+		GFF4705	0.70	-0.3
4,707,066	+		GFF4705	0.71	-1.5
4,707,080	+		GFF4705	0.73	-0.1
4,707,080	+		GFF4705	0.73	+0.1
4,707,085	+		GFF4705	0.74	-0.7
4,707,085	+		GFF4705	0.74	-0.4
4,707,085	+		GFF4705	0.74	-0.4
4,707,085	+		GFF4705	0.74	+0.1
4,707,106	+		GFF4705	0.77	+0.6
4,707,180	-		GFF4705	0.87	+1.7
4,707,190	-		GFF4705	0.88	-1.6
4,707,190	-		GFF4705	0.88	+0.1
4,707,216	+				+0.6
4,707,216	+				+1.5
4,707,216	+				-0.2
4,707,225	-				-1.9
4,707,241	+				+1.1
4,707,249	-				-1.0
4,707,298	+				+1.0
4,707,322	+				-1.8
4,707,336	+				+0.4
4,707,343	-				-1.9
4,707,351	-				+1.0
4,707,357	+				+0.4
4,707,357	+				-0.9
4,707,357	+				-2.0
4,707,364	+				-1.3
4,707,364	+				+0.5
4,707,364	+				-0.1
4,707,365	-				+0.9
4,707,383	+				+1.0
4,707,414	-				-0.8
4,707,438	+				-0.5
4,707,438	+				-0.5
4,707,438	+				+1.3
4,707,438	+				-2.3
4,707,438	+				-2.2
4,707,446	-				-0.9
4,707,455	+				+0.1
4,707,455	+				-0.3
4,707,455	+				-0.6
4,707,463	-				-0.6
4,707,463	-				+0.4
4,707,487	+				+0.4
4,707,495	-				+0.4
4,707,495	-				-0.5
4,707,503	-				-2.5
4,707,507	+				+0.4
4,707,512	+				+0.7
4,707,525	-				+0.8
4,707,535	-				-2.1
4,707,535	-				+1.1