Strain Fitness in Sphingobium sp. HT1-2 around GFF4613

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,607,468	-		GFF4611	0.80	-2.0
4,607,470	+		GFF4611	0.81	-1.5
4,607,470	-		GFF4611	0.81	-0.5
4,607,486	+		GFF4611	0.84	+0.0
4,607,486	+		GFF4611	0.84	+0.2
4,607,501	+		GFF4611	0.86	-0.4
4,607,506	+		GFF4611	0.87	-1.1
4,607,506	+		GFF4611	0.87	-1.7
4,607,506	+		GFF4611	0.87	-1.4
4,607,514	-		GFF4611	0.89	-0.1
4,607,514	-		GFF4611	0.89	-1.7
4,607,514	-		GFF4611	0.89	+1.4
4,607,520	+		GFF4611	0.90	-2.3
4,607,528	-				-1.0
4,607,575	+				-1.6
4,607,575	+				+0.3
4,607,583	-				-1.1
4,607,583	-				-0.6
4,607,583	-				-0.6
4,607,583	-				-0.4
4,607,604	-				-0.6
4,607,655	-				-0.5
4,607,671	+		GFF4612	0.11	-1.2
4,607,671	+		GFF4612	0.11	-0.9
4,607,671	+		GFF4612	0.11	+0.1
4,607,671	+		GFF4612	0.11	-0.3
4,607,671	+		GFF4612	0.11	-0.8
4,607,671	+		GFF4612	0.11	-0.1
4,607,671	+		GFF4612	0.11	-2.0
4,607,671	+		GFF4612	0.11	+0.9
4,607,679	-		GFF4612	0.12	-0.2
4,607,679	-		GFF4612	0.12	+1.0
4,607,679	-		GFF4612	0.12	+1.6
4,607,679	-		GFF4612	0.12	+0.7
4,607,695	+		GFF4612	0.13	-0.5
4,607,697	+		GFF4612	0.14	-0.7
4,607,744	+		GFF4612	0.19	+0.3
4,607,779	+		GFF4612	0.23	-1.1
4,607,796	+		GFF4612	0.25	+0.1
4,607,797	+		GFF4612	0.25	+0.0
4,607,803	+		GFF4612	0.26	+0.2
4,607,804	-		GFF4612	0.26	-0.7
4,607,811	-		GFF4612	0.27	+0.3
4,607,833	+		GFF4612	0.29	-0.3
4,607,833	+		GFF4612	0.29	+0.9
4,607,833	+		GFF4612	0.29	+0.1
4,607,833	+		GFF4612	0.29	+0.7
4,607,841	-		GFF4612	0.30	-0.8
4,607,841	-		GFF4612	0.30	-1.0
4,607,841	-		GFF4612	0.30	-0.9
4,607,843	+		GFF4612	0.30	+0.6
4,607,843	+		GFF4612	0.30	-2.3
4,607,843	+		GFF4612	0.30	-1.3
4,607,843	+		GFF4612	0.30	-0.0
4,607,843	+		GFF4612	0.30	-0.4
4,607,843	+		GFF4612	0.30	+0.5
4,607,843	+		GFF4612	0.30	-1.1
4,607,848	-		GFF4612	0.31	-0.2
4,607,851	-		GFF4612	0.31	-0.2
4,607,851	-		GFF4612	0.31	-1.2
4,607,851	-		GFF4612	0.31	-0.4
4,607,851	-		GFF4612	0.31	-1.4
4,607,854	+		GFF4612	0.32	+1.1
4,607,854	+		GFF4612	0.32	-1.6
4,607,854	+		GFF4612	0.32	+0.8
4,607,854	+		GFF4612	0.32	-0.6
4,607,854	+		GFF4612	0.32	-2.7
4,607,854	+		GFF4612	0.32	-1.8
4,607,854	+		GFF4612	0.32	-0.1
4,607,854	+		GFF4612	0.32	+0.2
4,607,854	+		GFF4612	0.32	-0.8
4,607,854	+		GFF4612	0.32	-2.5
4,607,854	+		GFF4612	0.32	-0.3
4,607,854	+		GFF4612	0.32	-0.9
4,607,854	+		GFF4612	0.32	-2.6
4,607,854	+		GFF4612	0.32	+0.0
4,607,854	+		GFF4612	0.32	-0.5
4,607,854	+		GFF4612	0.32	-1.1
4,607,862	-		GFF4612	0.32	-0.2
4,607,862	-		GFF4612	0.32	+0.3
4,607,862	-		GFF4612	0.32	-0.3
4,607,862	-		GFF4612	0.32	-1.9
4,607,862	-		GFF4612	0.32	-1.1
4,607,862	-		GFF4612	0.32	-0.3
4,607,862	-		GFF4612	0.32	-0.4
4,607,864	+		GFF4612	0.33	-1.8
4,607,864	+		GFF4612	0.33	+0.7
4,607,864	+		GFF4612	0.33	-0.5
4,607,864	+		GFF4612	0.33	-1.4
4,607,866	-		GFF4612	0.33	-3.0
4,607,867	-		GFF4612	0.33	-0.5
4,607,870	+		GFF4612	0.33	+0.6
4,607,870	+		GFF4612	0.33	+0.3
4,607,872	-		GFF4612	0.34	+0.2
4,607,872	-		GFF4612	0.34	-0.4
4,607,878	-		GFF4612	0.34	+0.6
4,607,878	-		GFF4612	0.34	-0.4
4,607,878	-		GFF4612	0.34	+0.4
4,607,886	+		GFF4612	0.35	+1.3
4,607,893	+		GFF4612	0.36	-0.5
4,607,893	-		GFF4612	0.36	-0.2
4,607,893	-		GFF4612	0.36	-0.2
4,607,901	-		GFF4612	0.37	-1.7
4,607,935	-		GFF4612	0.41	-2.6
4,607,955	+		GFF4612	0.43	-1.0
4,607,955	+		GFF4612	0.43	-2.6
4,607,956	-		GFF4612	0.43	-0.7
4,607,961	-		GFF4612	0.44	-0.8
4,607,969	-		GFF4612	0.45	+0.6
4,607,972	+		GFF4612	0.45	-0.3
4,607,972	+		GFF4612	0.45	-0.9
4,607,972	+		GFF4612	0.45	-0.6
4,607,972	+		GFF4612	0.45	-1.2
4,607,972	+		GFF4612	0.45	-0.6
4,607,973	+		GFF4612	0.45	-1.6
4,607,973	+		GFF4612	0.45	-2.2
4,607,973	+		GFF4612	0.45	+1.0
4,607,973	+		GFF4612	0.45	-0.9
4,607,973	+		GFF4612	0.45	-1.3
4,607,973	+		GFF4612	0.45	-2.4
4,607,973	+		GFF4612	0.45	-1.2
4,607,973	+		GFF4612	0.45	+0.9
4,607,973	+		GFF4612	0.45	-0.6
4,607,974	+		GFF4612	0.45	-1.3
4,607,980	-		GFF4612	0.46	-0.2
4,607,980	-		GFF4612	0.46	+0.4
4,607,980	-		GFF4612	0.46	-0.8
4,607,981	-		GFF4612	0.46	-0.7
4,607,981	-		GFF4612	0.46	+0.1
4,607,981	-		GFF4612	0.46	-0.2
4,607,981	-		GFF4612	0.46	-0.0
4,607,981	-		GFF4612	0.46	-1.5
4,607,981	-		GFF4612	0.46	-0.4
4,607,981	-		GFF4612	0.46	+0.6
4,607,982	-		GFF4612	0.46	-1.6
4,607,987	-		GFF4612	0.47	-0.1
4,607,987	-		GFF4612	0.47	-1.9
4,607,992	-		GFF4612	0.47	-0.4
4,607,992	-		GFF4612	0.47	+0.3
4,607,996	-		GFF4612	0.48	-1.2
4,607,997	-		GFF4612	0.48	-0.5
4,608,009	+		GFF4612	0.49	-0.2
4,608,014	+		GFF4612	0.50	-1.5
4,608,014	+		GFF4612	0.50	+1.8
4,608,014	+		GFF4612	0.50	+0.9
4,608,014	+		GFF4612	0.50	-0.1
4,608,014	+		GFF4612	0.50	-0.6
4,608,014	+		GFF4612	0.50	-2.1
4,608,014	+		GFF4612	0.50	-0.2
4,608,014	+		GFF4612	0.50	-0.9
4,608,014	+		GFF4612	0.50	-0.4
4,608,014	+		GFF4612	0.50	-1.9
4,608,014	+		GFF4612	0.50	-2.7
4,608,014	+		GFF4612	0.50	+0.3
4,608,014	+		GFF4612	0.50	+1.7
4,608,014	+		GFF4612	0.50	-2.1
4,608,014	+		GFF4612	0.50	-1.1
4,608,014	+		GFF4612	0.50	-1.8
4,608,014	+		GFF4612	0.50	-1.2
4,608,014	+		GFF4612	0.50	+0.2
4,608,014	+		GFF4612	0.50	-0.6
4,608,014	+		GFF4612	0.50	-0.4
4,608,014	+		GFF4612	0.50	+0.1
4,608,017	-		GFF4612	0.50	-0.8
4,608,022	-		GFF4612	0.51	-0.1
4,608,022	-		GFF4612	0.51	-2.8
4,608,022	-		GFF4612	0.51	-0.7
4,608,022	-		GFF4612	0.51	+0.0
4,608,022	-		GFF4612	0.51	+0.3
4,608,022	-		GFF4612	0.51	+1.2
4,608,022	-		GFF4612	0.51	-0.5
4,608,022	-		GFF4612	0.51	+0.0
4,608,022	-		GFF4612	0.51	+0.5
4,608,022	-		GFF4612	0.51	-0.7
4,608,022	-		GFF4612	0.51	-0.1
4,608,022	-		GFF4612	0.51	-0.1
4,608,022	-		GFF4612	0.51	-1.0
4,608,022	-		GFF4612	0.51	+1.4
4,608,022	-		GFF4612	0.51	-2.6
4,608,022	-		GFF4612	0.51	+1.8
4,608,022	-		GFF4612	0.51	-0.2
4,608,031	+		GFF4612	0.52	+0.0
4,608,044	-		GFF4612	0.53	-0.3
4,608,049	-		GFF4612	0.54	-0.0
4,608,054	-		GFF4612	0.54	-1.4
4,608,081	+		GFF4612	0.57	-1.1
4,608,102	+		GFF4612	0.60	-0.4
4,608,103	+		GFF4612	0.60	-1.0
4,608,143	-		GFF4612	0.64	-1.8
4,608,163	+		GFF4612	0.67	+1.1
4,608,171	-		GFF4612	0.68	+0.9
4,608,171	-		GFF4612	0.68	-1.8
4,608,181	+		GFF4612	0.69	-2.6
4,608,200	+		GFF4612	0.71	-0.9
4,608,200	+		GFF4612	0.71	-1.7
4,608,205	+		GFF4612	0.71	-0.2
4,608,208	-		GFF4612	0.72	+1.0
4,608,208	-		GFF4612	0.72	-0.3
4,608,208	-		GFF4612	0.72	-0.4
4,608,208	-		GFF4612	0.72	-1.6
4,608,208	-		GFF4612	0.72	-0.9
4,608,217	+		GFF4612	0.73	-0.4
4,608,217	+		GFF4612	0.73	+1.2
4,608,218	-		GFF4612	0.73	-1.0
4,608,225	-		GFF4612	0.74	-0.1
4,608,225	-		GFF4612	0.74	-0.2
4,608,241	+		GFF4612	0.76	-0.2
4,608,256	+		GFF4612	0.77	-0.1
4,608,261	+		GFF4612	0.78	-2.1
4,608,264	-		GFF4612	0.78	+0.0
4,608,269	-		GFF4612	0.79	-0.0
4,608,282	+		GFF4612	0.80	-1.4
4,608,287	+		GFF4612	0.81	-0.7
4,608,303	-		GFF4612	0.83	+0.8
4,608,315	-		GFF4612	0.84	-0.8
4,608,317	+		GFF4612	0.84	-0.7
4,608,332	+		GFF4612	0.86	+0.8
4,608,339	-		GFF4612	0.87	-1.9
4,608,340	-		GFF4612	0.87	-0.7
4,608,353	+		GFF4612	0.88	+1.2
4,608,359	-		GFF4612	0.89	-1.9
4,608,361	+		GFF4612	0.89	+0.1
4,608,381	+				+0.9
4,608,384	-				-1.0
4,608,388	+				+0.4
4,608,388	+				-0.8
4,608,388	+				+0.6
4,608,388	+				+0.9
4,608,408	-				+0.2
4,608,458	+				-0.3
4,608,458	+				-1.6
4,608,466	-				-0.9
4,608,522	+		GFF4613	0.10	-0.8
4,608,530	-		GFF4613	0.12	-2.1
4,608,530	-		GFF4613	0.12	+0.9
4,608,534	+		GFF4613	0.12	+0.1
4,608,534	+		GFF4613	0.12	+0.7
4,608,570	-		GFF4613	0.19	-1.4
4,608,570	-		GFF4613	0.19	-1.1
4,608,576	-		GFF4613	0.20	-0.8
4,608,580	+		GFF4613	0.21	-0.5
4,608,582	+		GFF4613	0.21	+0.1
4,608,582	+		GFF4613	0.21	-0.2
4,608,587	+		GFF4613	0.22	+0.2
4,608,587	+		GFF4613	0.22	-1.4
4,608,587	+		GFF4613	0.22	-0.9
4,608,588	-		GFF4613	0.22	-1.6
4,608,589	+		GFF4613	0.23	+1.0
4,608,590	-		GFF4613	0.23	-1.5
4,608,595	-		GFF4613	0.24	-0.3
4,608,597	+		GFF4613	0.24	-0.4
4,608,597	+		GFF4613	0.24	+1.6
4,608,599	+		GFF4613	0.24	-1.1
4,608,599	+		GFF4613	0.24	-1.3
4,608,599	+		GFF4613	0.24	+0.6
4,608,601	+		GFF4613	0.25	-1.0
4,608,605	+		GFF4613	0.26	+0.4
4,608,605	-		GFF4613	0.26	-2.5
4,608,607	-		GFF4613	0.26	+0.9
4,608,615	-		GFF4613	0.27	-1.9
4,608,617	-		GFF4613	0.28	-0.3
4,608,624	+		GFF4613	0.29	+1.9
4,608,629	+		GFF4613	0.30	-0.1
4,608,636	+		GFF4613	0.31	-0.7
4,608,654	-		GFF4613	0.35	-0.7
4,608,668	+		GFF4613	0.37	+0.7
4,608,681	+		GFF4613	0.40	-0.1
4,608,689	-		GFF4613	0.41	-0.8
4,608,689	-		GFF4613	0.41	+0.4
4,608,691	+		GFF4613	0.41	-1.1
4,608,694	-		GFF4613	0.42	-2.4
4,608,699	-		GFF4613	0.43	+0.9
4,608,720	+		GFF4613	0.47	+0.2
4,608,742	+		GFF4613	0.51	+1.0
4,608,745	-		GFF4613	0.51	+0.7
4,608,755	-		GFF4613	0.53	-1.1
4,608,768	-		GFF4613	0.56	-1.3
4,608,775	+		GFF4613	0.57	-2.6
4,608,777	-		GFF4613	0.57	-0.3
4,608,788	-		GFF4613	0.59	-1.6
4,608,792	+		GFF4613	0.60	-0.6
4,608,792	+		GFF4613	0.60	-1.1
4,608,792	+		GFF4613	0.60	-0.5
4,608,792	+		GFF4613	0.60	-1.8
4,608,792	+		GFF4613	0.60	-0.4
4,608,792	+		GFF4613	0.60	-0.0
4,608,792	+		GFF4613	0.60	-1.4
4,608,792	-		GFF4613	0.60	-0.2
4,608,800	-		GFF4613	0.62	+0.4
4,608,800	-		GFF4613	0.62	-0.2
4,608,800	-		GFF4613	0.62	+1.4
4,608,800	-		GFF4613	0.62	+0.2
4,608,800	-		GFF4613	0.62	+0.4
4,608,800	-		GFF4613	0.62	-0.8
4,608,800	-		GFF4613	0.62	-1.5
4,608,800	-		GFF4613	0.62	+0.2
4,608,802	-		GFF4613	0.62	+0.3
4,608,802	-		GFF4613	0.62	+0.1
4,608,802	-		GFF4613	0.62	-1.4
4,608,820	+		GFF4613	0.65	-2.3
4,608,822	+		GFF4613	0.66	+1.0
4,608,823	-		GFF4613	0.66	-0.3
4,608,827	+		GFF4613	0.67	-1.1
4,608,830	-		GFF4613	0.67	+1.2
4,608,835	-		GFF4613	0.68	+0.9
4,608,835	-		GFF4613	0.68	-1.1
4,608,867	-		GFF4613	0.74	+1.4
4,608,873	-		GFF4613	0.75	-0.7
4,608,899	+		GFF4613	0.80	-0.6
4,608,899	+		GFF4613	0.80	+0.7
4,608,899	+		GFF4613	0.80	+0.5
4,608,902	-		GFF4613	0.81	+0.0
4,608,904	+		GFF4613	0.81	+0.3
4,608,904	+		GFF4613	0.81	-0.7
4,608,907	-		GFF4613	0.81	+0.2
4,608,907	-		GFF4613	0.81	-0.8
4,608,907	-		GFF4613	0.81	+0.0
4,608,907	-		GFF4613	0.81	+0.9
4,608,907	-		GFF4613	0.81	-0.9
4,608,912	-		GFF4613	0.82	-0.8
4,608,917	-		GFF4613	0.83	-1.6
4,608,919	+		GFF4613	0.84	-0.4
4,608,919	+		GFF4613	0.84	-0.7
4,608,927	-		GFF4613	0.85	-1.7
4,608,927	-		GFF4613	0.85	-0.5
4,608,928	-		GFF4613	0.85	+0.2
4,608,928	-		GFF4613	0.85	-1.6
4,608,935	-		GFF4613	0.87	-1.4
4,608,968	+				-3.4
4,608,969	-				+0.2
4,608,971	-				-0.3
4,608,976	-				+0.4
4,609,010	+				-0.1
4,609,010	+				+0.0
4,609,010	+				-2.4
4,609,014	+				-0.2
4,609,018	-				-0.9
4,609,056	+				-0.9
4,609,056	+				-1.7
4,609,056	+				-1.2
4,609,064	-				+0.3
4,609,064	-				+0.1
4,609,064	-				-0.6
4,609,064	-				-0.5
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