Strain Fitness in Sphingobium sp. HT1-2 around GFF4603

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,594,932	+				-1.8
4,594,936	-				-2.2
4,595,080	+				-0.3
4,595,081	+				-0.7
4,595,088	-				-1.7
4,595,088	-				+1.0
4,595,127	-				-0.5
4,595,131	+				-0.7
4,595,140	+				+0.5
4,595,140	+				+0.8
4,595,140	+				+0.1
4,595,140	+				+0.6
4,595,140	+				+0.6
4,595,148	-				-0.7
4,595,150	+				-1.1
4,595,155	+				+1.4
4,595,158	-				-2.1
4,595,161	-				+0.7
4,595,166	-				-0.6
4,595,172	+				-0.5
4,595,187	+		GFF4602	0.12	-1.8
4,595,206	+		GFF4602	0.14	-1.0
4,595,206	+		GFF4602	0.14	-2.4
4,595,206	+		GFF4602	0.14	-0.5
4,595,206	+		GFF4602	0.14	-0.6
4,595,214	-		GFF4602	0.15	-0.3
4,595,229	+		GFF4602	0.17	-1.1
4,595,231	+		GFF4602	0.17	-0.6
4,595,237	-		GFF4602	0.18	-0.4
4,595,244	-		GFF4602	0.18	-1.0
4,595,257	-		GFF4602	0.20	-1.1
4,595,259	-		GFF4602	0.20	+0.2
4,595,268	+		GFF4602	0.21	-1.0
4,595,269	-		GFF4602	0.21	-0.9
4,595,274	+		GFF4602	0.22	+1.4
4,595,276	-		GFF4602	0.22	-1.2
4,595,282	-		GFF4602	0.23	+0.6
4,595,285	-		GFF4602	0.23	-2.6
4,595,296	+		GFF4602	0.25	+0.0
4,595,296	+		GFF4602	0.25	-3.1
4,595,304	-		GFF4602	0.26	+0.8
4,595,304	-		GFF4602	0.26	+1.4
4,595,316	+		GFF4602	0.27	+0.6
4,595,324	-		GFF4602	0.28	+0.5
4,595,330	+		GFF4602	0.29	-0.1
4,595,330	+		GFF4602	0.29	-0.2
4,595,342	+		GFF4602	0.30	-0.7
4,595,371	+		GFF4602	0.34	+1.0
4,595,396	+		GFF4602	0.37	+0.9
4,595,402	+		GFF4602	0.37	-1.4
4,595,402	-		GFF4602	0.37	-1.1
4,595,403	+		GFF4602	0.38	+0.5
4,595,411	-		GFF4602	0.38	-2.4
4,595,413	+		GFF4602	0.39	-0.4
4,595,413	+		GFF4602	0.39	-1.5
4,595,417	+		GFF4602	0.39	-2.6
4,595,425	-		GFF4602	0.40	+0.4
4,595,425	-		GFF4602	0.40	-2.4
4,595,432	+		GFF4602	0.41	+1.2
4,595,432	+		GFF4602	0.41	-0.2
4,595,432	+		GFF4602	0.41	+0.2
4,595,432	+		GFF4602	0.41	-1.8
4,595,432	+		GFF4602	0.41	+1.2
4,595,440	-		GFF4602	0.42	+0.2
4,595,440	-		GFF4602	0.42	-2.3
4,595,475	+		GFF4602	0.46	+0.1
4,595,517	-		GFF4602	0.51	-0.0
4,595,520	+		GFF4602	0.52	+1.0
4,595,528	-		GFF4602	0.53	-1.4
4,595,563	+		GFF4602	0.57	-1.0
4,595,563	+		GFF4602	0.57	-0.9
4,595,563	+		GFF4602	0.57	-1.4
4,595,571	-		GFF4602	0.58	-0.6
4,595,589	-		GFF4602	0.60	-0.7
4,595,629	+		GFF4602	0.65	-1.8
4,595,641	+		GFF4602	0.66	+0.9
4,595,641	+		GFF4602	0.66	-0.1
4,595,641	+		GFF4602	0.66	-1.0
4,595,641	+		GFF4602	0.66	-0.0
4,595,641	+		GFF4602	0.66	-1.0
4,595,649	-		GFF4602	0.67	+0.0
4,595,649	-		GFF4602	0.67	+0.0
4,595,667	-		GFF4602	0.69	-0.2
4,595,673	+		GFF4602	0.70	+0.6
4,595,681	-		GFF4602	0.71	+0.0
4,595,681	-		GFF4602	0.71	-0.8
4,595,681	-		GFF4602	0.71	-0.8
4,595,681	-		GFF4602	0.71	-0.2
4,595,681	-		GFF4602	0.71	-1.4
4,595,686	+		GFF4602	0.71	+0.3
4,595,687	+		GFF4602	0.72	-0.2
4,595,695	-		GFF4602	0.73	+0.5
4,595,695	-		GFF4602	0.73	-0.7
4,595,695	-		GFF4602	0.73	-0.1
4,595,695	-		GFF4602	0.73	+0.5
4,595,706	+		GFF4602	0.74	-0.6
4,595,712	-		GFF4602	0.75	-1.7
4,595,712	-		GFF4602	0.75	+1.0
4,595,714	+		GFF4602	0.75	+0.4
4,595,714	+		GFF4602	0.75	-0.4
4,595,714	-		GFF4602	0.75	-1.4
4,595,723	+		GFF4602	0.76	-0.3
4,595,723	+		GFF4602	0.76	-0.6
4,595,725	-		GFF4602	0.76	-2.0
4,595,779	-		GFF4602	0.83	-0.3
4,595,779	-		GFF4602	0.83	+0.2
4,595,822	+		GFF4602	0.88	-1.7
4,595,827	-		GFF4602	0.88	-2.9
4,595,829	+		GFF4602	0.89	+0.6
4,595,834	+		GFF4602	0.89	-0.7
4,595,834	+		GFF4602	0.89	+0.2
4,595,834	+		GFF4602	0.89	-2.5
4,595,834	+		GFF4602	0.89	-0.7
4,595,836	+		GFF4602	0.89	+0.6
4,595,837	-		GFF4602	0.90	-1.0
4,595,842	-				-2.6
4,595,842	-				-1.1
4,595,852	-				-1.1
4,595,852	-				-1.2
4,595,860	+				+0.4
4,595,860	+				-0.1
4,595,860	+				+0.3
4,595,868	-				-1.7
4,595,868	-				-0.8
4,595,919	-				-0.0
4,595,924	+				+0.9
4,595,938	+				-1.8
4,595,944	-				-0.2
4,595,948	+				-0.5
4,596,004	-				-0.1
4,596,015	-				-1.4
4,596,028	+				-1.2
4,596,099	+		GFF4603	0.12	-0.6
4,596,107	-		GFF4603	0.12	+0.2
4,596,109	+		GFF4603	0.13	-2.3
4,596,117	-		GFF4603	0.13	-0.6
4,596,117	-		GFF4603	0.13	-2.6
4,596,126	+		GFF4603	0.14	+1.7
4,596,126	+		GFF4603	0.14	+0.7
4,596,126	+		GFF4603	0.14	-0.3
4,596,134	-		GFF4603	0.14	-0.2
4,596,134	-		GFF4603	0.14	-1.0
4,596,134	-		GFF4603	0.14	-0.6
4,596,134	-		GFF4603	0.14	-1.1
4,596,134	-		GFF4603	0.14	-0.3
4,596,134	-		GFF4603	0.14	-0.7
4,596,154	+		GFF4603	0.15	-1.4
4,596,157	+		GFF4603	0.16	-1.9
4,596,157	-		GFF4603	0.16	-0.2
4,596,163	+		GFF4603	0.16	-1.0
4,596,188	+		GFF4603	0.17	-1.6
4,596,235	+		GFF4603	0.20	-0.6
4,596,246	+		GFF4603	0.21	-0.8
4,596,254	-		GFF4603	0.22	-0.7
4,596,259	-		GFF4603	0.22	+1.7
4,596,260	+		GFF4603	0.22	-2.3
4,596,270	+		GFF4603	0.23	-0.1
4,596,270	+		GFF4603	0.23	-0.8
4,596,270	+		GFF4603	0.23	+0.4
4,596,273	-		GFF4603	0.23	-1.6
4,596,276	+		GFF4603	0.23	+0.2
4,596,313	-		GFF4603	0.25	-1.4
4,596,353	-		GFF4603	0.28	-1.2
4,596,371	-		GFF4603	0.29	-0.7
4,596,371	-		GFF4603	0.29	-1.4
4,596,382	+		GFF4603	0.30	+0.0
4,596,390	-		GFF4603	0.30	-1.8
4,596,390	-		GFF4603	0.30	-0.4
4,596,411	+		GFF4603	0.31	-1.0
4,596,411	+		GFF4603	0.31	-0.6
4,596,411	+		GFF4603	0.31	+0.1
4,596,411	+		GFF4603	0.31	-0.5
4,596,411	+		GFF4603	0.31	-0.0
4,596,411	-		GFF4603	0.31	-1.3
4,596,419	-		GFF4603	0.32	+0.2
4,596,419	-		GFF4603	0.32	+1.5
4,596,419	-		GFF4603	0.32	-1.8
4,596,419	-		GFF4603	0.32	-0.6
4,596,421	-		GFF4603	0.32	-0.1
4,596,432	+		GFF4603	0.33	-0.2
4,596,451	+		GFF4603	0.34	+0.6
4,596,489	-		GFF4603	0.36	-0.3
4,596,491	-		GFF4603	0.36	-1.0
4,596,503	+		GFF4603	0.37	+1.8
4,596,508	-		GFF4603	0.37	+0.1
4,596,544	+		GFF4603	0.40	+0.6
4,596,552	-		GFF4603	0.40	-1.1
4,596,552	-		GFF4603	0.40	-0.4
4,596,558	+		GFF4603	0.41	-0.7
4,596,558	+		GFF4603	0.41	-1.8
4,596,566	-		GFF4603	0.41	-0.7
4,596,581	+		GFF4603	0.42	+0.6
4,596,581	+		GFF4603	0.42	-0.7
4,596,581	+		GFF4603	0.42	-0.6
4,596,581	+		GFF4603	0.42	-0.3
4,596,584	-		GFF4603	0.42	-0.8
4,596,589	-		GFF4603	0.43	-1.2
4,596,589	-		GFF4603	0.43	-0.4
4,596,589	-		GFF4603	0.43	+0.6
4,596,589	-		GFF4603	0.43	+0.2
4,596,589	-		GFF4603	0.43	-1.9
4,596,589	-		GFF4603	0.43	+0.4
4,596,589	-		GFF4603	0.43	-0.6
4,596,591	+		GFF4603	0.43	+0.2
4,596,604	+		GFF4603	0.43	-0.8
4,596,604	+		GFF4603	0.43	-1.7
4,596,604	-		GFF4603	0.43	+0.5
4,596,606	+		GFF4603	0.44	-2.5
4,596,611	+		GFF4603	0.44	+0.1
4,596,625	-		GFF4603	0.45	+0.0
4,596,644	+		GFF4603	0.46	-1.1
4,596,663	-		GFF4603	0.47	+0.9
4,596,665	-		GFF4603	0.47	-1.9
4,596,673	+		GFF4603	0.48	-0.7
4,596,677	-		GFF4603	0.48	-0.8
4,596,681	+		GFF4603	0.48	+0.5
4,596,686	+		GFF4603	0.49	+0.3
4,596,688	+		GFF4603	0.49	-0.1
4,596,696	+		GFF4603	0.49	-1.0
4,596,696	+		GFF4603	0.49	-1.4
4,596,699	-		GFF4603	0.49	+0.8
4,596,704	-		GFF4603	0.50	-0.1
4,596,765	-		GFF4603	0.54	-1.0
4,596,777	+		GFF4603	0.54	-0.6
4,596,782	+		GFF4603	0.55	+0.8
4,596,803	+		GFF4603	0.56	-0.8
4,596,803	+		GFF4603	0.56	-0.7
4,596,803	+		GFF4603	0.56	+0.3
4,596,803	+		GFF4603	0.56	-0.1
4,596,822	+		GFF4603	0.57	-0.2
4,596,822	+		GFF4603	0.57	-2.0
4,596,827	+		GFF4603	0.57	-0.4
4,596,830	-		GFF4603	0.58	-1.3
4,596,830	-		GFF4603	0.58	-1.7
4,596,832	-		GFF4603	0.58	-0.7
4,596,837	+		GFF4603	0.58	-1.8
4,596,845	+		GFF4603	0.59	-0.7
4,596,852	+		GFF4603	0.59	+0.3
4,596,852	-		GFF4603	0.59	-1.1
4,596,876	+		GFF4603	0.60	-0.0
4,596,888	-		GFF4603	0.61	+0.4
4,596,914	+		GFF4603	0.63	+1.8
4,596,948	+		GFF4603	0.65	-1.8
4,596,956	-		GFF4603	0.65	-0.8
4,596,956	-		GFF4603	0.65	-1.1
4,596,981	-		GFF4603	0.67	-0.3
4,596,981	-		GFF4603	0.67	+0.4
4,597,024	-		GFF4603	0.70	+0.2
4,597,026	-		GFF4603	0.70	+0.2
4,597,039	+		GFF4603	0.71	-1.6
4,597,047	-		GFF4603	0.71	-0.3
4,597,071	-		GFF4603	0.73	-0.4
4,597,086	+		GFF4603	0.74	-1.4
4,597,087	-		GFF4603	0.74	+0.6
4,597,094	-		GFF4603	0.74	-1.1
4,597,130	+		GFF4603	0.76	+1.0
4,597,135	+		GFF4603	0.77	-0.6
4,597,135	+		GFF4603	0.77	+0.1
4,597,135	+		GFF4603	0.77	-0.7
4,597,188	+		GFF4603	0.80	+0.2
4,597,196	-		GFF4603	0.80	-1.1
4,597,207	+		GFF4603	0.81	+1.2
4,597,212	+		GFF4603	0.81	-1.6
4,597,222	+		GFF4603	0.82	+0.1
4,597,230	-		GFF4603	0.83	+1.0
4,597,236	+		GFF4603	0.83	-1.1
4,597,244	-		GFF4603	0.83	-0.8
4,597,267	+		GFF4603	0.85	+0.5
4,597,322	+		GFF4603	0.88	-0.0
4,597,325	+		GFF4603	0.89	-1.4
4,597,330	-		GFF4603	0.89	+0.1
4,597,330	-		GFF4603	0.89	+0.0
4,597,343	+		GFF4603	0.90	+0.5
4,597,346	-		GFF4603	0.90	-0.6
4,597,348	+				+0.6
4,597,351	-				-0.3
4,597,353	+				-0.7
4,597,353	+				-1.7
4,597,353	+				-0.1
4,597,353	+				-0.3
4,597,356	-				-1.7
4,597,361	-				-1.4
4,597,361	-				+1.0
4,597,361	-				+0.7
4,597,361	-				+0.8
4,597,363	+				-1.2
4,597,368	+				+0.4
4,597,368	+				-0.6
4,597,368	+				-2.6
4,597,368	+				-2.1
4,597,368	+				-3.0
4,597,368	+				+1.2
4,597,368	+				-1.2
4,597,376	-				-0.6
4,597,376	-				+0.3
4,597,376	-				-0.6
4,597,376	-				-1.9
4,597,376	-				-1.5
4,597,376	-				-1.2
4,597,376	-				-1.1
4,597,376	-				+0.6
4,597,376	-				-0.8
4,597,381	+				-0.6
4,597,389	-				-0.9
4,597,394	+				-0.6
4,597,438	-				-2.1
4,597,445	+				-0.1
4,597,445	+				+0.8
4,597,446	+				-0.4
4,597,446	+				+0.0
4,597,446	+				+0.7
4,597,446	+				+0.5
4,597,446	+				-0.7
4,597,451	+				-1.3
4,597,453	-				+0.6
4,597,453	-				-1.9
4,597,453	-				+0.0
4,597,454	-				-2.4
4,597,454	-				+0.3
4,597,454	-				-2.7
4,597,456	+				-0.4
4,597,465	+				-0.4
4,597,488	+				-2.2
4,597,518	+				-1.7
4,597,518	+				-0.3
4,597,518	+				-0.9
4,597,524	-				+0.4
4,597,562	-				-1.7
4,597,575	+				-1.7
4,597,576	-				-2.0
4,597,579	+				-1.0
4,597,589	+				-2.6
4,597,634	+				-1.3
4,597,638	+				-2.4
4,597,641	-				-1.2
4,597,656	-		GFF4604	0.10	-0.5
4,597,656	-		GFF4604	0.10	+0.4
4,597,669	+		GFF4604	0.11	+0.1
4,597,669	+		GFF4604	0.11	-0.5
4,597,669	+		GFF4604	0.11	+0.3
4,597,674	+		GFF4604	0.12	-0.5
4,597,674	+		GFF4604	0.12	+0.2
4,597,677	+		GFF4604	0.12	+0.2
4,597,677	-		GFF4604	0.12	+0.0
4,597,679	+		GFF4604	0.12	+0.6
4,597,679	+		GFF4604	0.12	-1.6
4,597,679	+		GFF4604	0.12	-2.4
4,597,680	+		GFF4604	0.12	-1.9
4,597,680	+		GFF4604	0.12	-1.9
4,597,680	+		GFF4604	0.12	+0.0
4,597,682	-		GFF4604	0.12	+1.3
4,597,682	-		GFF4604	0.12	-0.3
4,597,682	-		GFF4604	0.12	-0.2
4,597,687	-		GFF4604	0.13	-1.0
4,597,688	-		GFF4604	0.13	+0.0
4,597,688	-		GFF4604	0.13	+0.7
4,597,688	-		GFF4604	0.13	+0.3
4,597,688	-		GFF4604	0.13	+0.6
4,597,688	-		GFF4604	0.13	+0.3
4,597,688	-		GFF4604	0.13	+1.6
4,597,688	-		GFF4604	0.13	-2.0
4,597,725	-		GFF4604	0.15	-2.6
4,597,749	+		GFF4604	0.17	-1.6
4,597,773	+		GFF4604	0.19	-0.6
4,597,773	+		GFF4604	0.19	-1.1
4,597,788	+		GFF4604	0.20	+0.5
4,597,827	+		GFF4604	0.22	-0.9
4,597,827	+		GFF4604	0.22	-1.7
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