Strain Fitness in Sphingobium sp. HT1-2 around GFF4598

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,588,915	+		GFF4596	0.51	+1.0
4,588,988	+		GFF4596	0.57	+0.8
4,588,998	-		GFF4596	0.58	-1.6
4,589,011	+		GFF4596	0.59	-0.3
4,589,011	+		GFF4596	0.59	-1.1
4,589,019	-		GFF4596	0.60	+0.6
4,589,019	-		GFF4596	0.60	-2.6
4,589,021	+		GFF4596	0.60	-1.4
4,589,021	+		GFF4596	0.60	-0.6
4,589,021	+		GFF4596	0.60	-0.0
4,589,021	+		GFF4596	0.60	-0.8
4,589,026	+		GFF4596	0.61	+0.3
4,589,026	+		GFF4596	0.61	-0.2
4,589,029	-		GFF4596	0.61	-0.7
4,589,031	+		GFF4596	0.61	-1.2
4,589,053	+		GFF4596	0.63	-0.8
4,589,054	+		GFF4596	0.63	-0.7
4,589,058	-		GFF4596	0.63	+0.3
4,589,061	-		GFF4596	0.64	+0.2
4,589,093	+		GFF4596	0.66	-0.6
4,589,095	+		GFF4596	0.67	-0.6
4,589,106	+		GFF4596	0.68	-2.7
4,589,112	-		GFF4596	0.68	-1.3
4,589,114	-		GFF4596	0.68	+0.1
4,589,122	-		GFF4596	0.69	+0.4
4,589,125	+		GFF4596	0.69	-0.7
4,589,142	+		GFF4596	0.71	+0.2
4,589,146	+		GFF4596	0.71	-0.6
4,589,154	-		GFF4596	0.72	-2.8
4,589,154	-		GFF4596	0.72	-0.3
4,589,167	+		GFF4596	0.73	+0.3
4,589,167	+		GFF4596	0.73	-2.1
4,589,168	-		GFF4596	0.73	-1.3
4,589,175	+		GFF4596	0.74	-0.5
4,589,175	+		GFF4596	0.74	+0.1
4,589,175	-		GFF4596	0.74	-2.2
4,589,183	-		GFF4596	0.74	-1.3
4,589,183	-		GFF4596	0.74	-2.1
4,589,183	-		GFF4596	0.74	-1.0
4,589,183	-		GFF4596	0.74	+0.4
4,589,197	+		GFF4596	0.75	+0.8
4,589,205	-		GFF4596	0.76	-0.6
4,589,205	-		GFF4596	0.76	-1.5
4,589,245	+		GFF4596	0.80	-2.8
4,589,299	-		GFF4596	0.84	+0.0
4,589,343	+		GFF4596	0.88	+0.0
4,589,351	-		GFF4596	0.89	-1.1
4,589,355	+		GFF4596	0.89	-1.3
4,589,368	+				+0.9
4,589,368	+				-0.2
4,589,368	+				+0.2
4,589,371	-				-2.1
4,589,376	-				-1.7
4,589,376	-				+1.3
4,589,378	+				-0.5
4,589,388	+				-0.9
4,589,388	+				+0.4
4,589,388	+				-0.4
4,589,388	+				+0.1
4,589,388	+				-1.6
4,589,388	+				-0.4
4,589,388	+				+0.2
4,589,388	+				+0.2
4,589,388	+				-1.9
4,589,388	+				+0.3
4,589,388	+				+0.4
4,589,388	+				-1.2
4,589,388	+				+0.9
4,589,388	+				-0.8
4,589,388	+				-1.1
4,589,388	+				-0.4
4,589,388	+				-3.1
4,589,388	+				-0.8
4,589,388	+				-0.9
4,589,388	+				-0.8
4,589,388	+				-1.0
4,589,388	+				-0.9
4,589,388	+				-0.2
4,589,388	+				-0.8
4,589,388	+				-0.8
4,589,396	-				-0.9
4,589,396	-				-0.4
4,589,396	-				-0.0
4,589,396	-				-0.5
4,589,396	-				-0.9
4,589,396	-				+0.6
4,589,396	-				-1.1
4,589,396	-				-0.3
4,589,396	-				-1.7
4,589,396	-				-1.7
4,589,396	-				+0.1
4,589,396	-				+0.4
4,589,396	-				-2.2
4,589,396	-				+0.2
4,589,396	-				-0.8
4,589,396	-				-1.7
4,589,425	+				-1.1
4,589,425	+				+0.2
4,589,433	-				-2.1
4,589,433	-				-0.7
4,589,437	+				-0.7
4,589,443	+				-2.2
4,589,443	+				-1.6
4,589,443	+				+0.2
4,589,443	+				+1.7
4,589,443	+				+0.5
4,589,443	+				-1.9
4,589,443	+				-2.1
4,589,443	+				+0.3
4,589,443	+				+1.5
4,589,451	-				-1.0
4,589,451	-				-1.4
4,589,451	-				-1.2
4,589,451	-				-0.4
4,589,451	-				-1.1
4,589,451	-				-2.0
4,589,451	-				+1.2
4,589,451	-				-2.4
4,589,451	-				-1.1
4,589,476	+				-2.7
4,589,476	+				+0.1
4,589,476	+				-1.0
4,589,479	-				-1.7
4,589,484	-				+0.7
4,589,484	-				-0.9
4,589,484	-				-2.3
4,589,493	-				-1.4
4,589,500	+				-0.4
4,589,570	+		GFF4597	0.20	+0.3
4,589,602	+		GFF4597	0.28	-0.3
4,589,602	+		GFF4597	0.28	-0.6
4,589,610	-		GFF4597	0.30	-1.8
4,589,610	-		GFF4597	0.30	-0.6
4,589,617	+		GFF4597	0.32	-0.9
4,589,617	+		GFF4597	0.32	-0.6
4,589,617	+		GFF4597	0.32	-0.3
4,589,617	+		GFF4597	0.32	+1.0
4,589,617	+		GFF4597	0.32	-1.9
4,589,617	+		GFF4597	0.32	+0.4
4,589,617	+		GFF4597	0.32	-0.8
4,589,619	+		GFF4597	0.32	+0.3
4,589,619	+		GFF4597	0.32	+0.8
4,589,625	-		GFF4597	0.34	-2.0
4,589,625	-		GFF4597	0.34	-0.4
4,589,625	-		GFF4597	0.34	-1.4
4,589,625	-		GFF4597	0.34	-1.6
4,589,625	-		GFF4597	0.34	-0.0
4,589,625	-		GFF4597	0.34	+0.4
4,589,625	-		GFF4597	0.34	-1.1
4,589,654	+		GFF4597	0.41	+0.0
4,589,654	+		GFF4597	0.41	-1.9
4,589,654	+		GFF4597	0.41	-0.7
4,589,654	+		GFF4597	0.41	-0.7
4,589,662	-		GFF4597	0.43	-1.0
4,589,662	-		GFF4597	0.43	-0.3
4,589,664	+		GFF4597	0.43	+0.4
4,589,665	+		GFF4597	0.44	-1.0
4,589,741	+		GFF4597	0.62	-0.0
4,589,748	+		GFF4597	0.64	-1.1
4,589,748	+		GFF4597	0.64	+0.0
4,589,749	-		GFF4597	0.64	+0.2
4,589,749	-		GFF4597	0.64	-0.2
4,589,754	+		GFF4597	0.65	-0.6
4,589,756	-		GFF4597	0.66	-2.1
4,589,762	-		GFF4597	0.67	-0.0
4,589,762	-		GFF4597	0.67	-0.9
4,589,770	+		GFF4597	0.69	-1.2
4,589,822	+		GFF4597	0.82	-0.2
4,589,830	-		GFF4597	0.84	+0.1
4,589,830	-		GFF4597	0.84	+1.2
4,589,837	+		GFF4597	0.86	+0.6
4,589,842	+		GFF4597	0.87	-0.7
4,589,844	+		GFF4597	0.88	-0.8
4,589,844	+		GFF4597	0.88	-1.7
4,589,849	+		GFF4597	0.89	+0.1
4,589,861	+				-0.5
4,589,877	-				+0.9
4,589,883	+				+0.3
4,589,883	+				-0.9
4,589,888	+				+0.2
4,589,891	-				-0.5
4,589,891	-				+0.7
4,589,891	-				-0.7
4,589,891	-				+0.1
4,589,891	-				-1.1
4,589,896	-				-1.0
4,589,898	-				-0.6
4,589,902	+				+1.4
4,589,902	+				+0.3
4,589,905	-				+0.2
4,589,910	-				+1.7
4,589,910	-				-2.1
4,589,915	-				-0.5
4,589,944	-				+0.0
4,589,944	-				+0.6
4,589,949	-				-2.8
4,589,972	+				+1.1
4,589,980	+				-1.9
4,589,980	-				+0.2
4,589,980	-				-1.5
4,590,008	+		GFF4598	0.12	+0.2
4,590,047	+		GFF4598	0.16	-1.6
4,590,047	+		GFF4598	0.16	+0.4
4,590,047	+		GFF4598	0.16	+1.2
4,590,047	+		GFF4598	0.16	-1.7
4,590,047	+		GFF4598	0.16	-2.2
4,590,047	+		GFF4598	0.16	-0.3
4,590,047	+		GFF4598	0.16	-0.8
4,590,047	+		GFF4598	0.16	-0.3
4,590,047	+		GFF4598	0.16	-0.4
4,590,047	+		GFF4598	0.16	-0.0
4,590,047	+		GFF4598	0.16	-1.9
4,590,047	+		GFF4598	0.16	+0.3
4,590,047	+		GFF4598	0.16	-1.1
4,590,055	-		GFF4598	0.17	-2.6
4,590,055	-		GFF4598	0.17	-0.4
4,590,055	-		GFF4598	0.17	-1.1
4,590,055	-		GFF4598	0.17	-1.6
4,590,055	-		GFF4598	0.17	-1.7
4,590,055	-		GFF4598	0.17	+1.4
4,590,055	-		GFF4598	0.17	-0.7
4,590,055	-		GFF4598	0.17	-0.6
4,590,055	-		GFF4598	0.17	-0.2
4,590,055	-		GFF4598	0.17	-0.1
4,590,055	-		GFF4598	0.17	+0.1
4,590,055	-		GFF4598	0.17	-1.5
4,590,055	-		GFF4598	0.17	+0.2
4,590,055	-		GFF4598	0.17	-0.3
4,590,055	-		GFF4598	0.17	-1.7
4,590,055	-		GFF4598	0.17	+0.3
4,590,055	-		GFF4598	0.17	-1.8
4,590,065	-		GFF4598	0.18	-0.7
4,590,074	+		GFF4598	0.19	-1.0
4,590,074	+		GFF4598	0.19	-0.8
4,590,074	+		GFF4598	0.19	+0.2
4,590,074	+		GFF4598	0.19	+0.4
4,590,074	+		GFF4598	0.19	-0.4
4,590,074	+		GFF4598	0.19	-0.7
4,590,074	+		GFF4598	0.19	+0.5
4,590,074	+		GFF4598	0.19	-0.4
4,590,074	+		GFF4598	0.19	+0.0
4,590,074	+		GFF4598	0.19	-1.2
4,590,074	+		GFF4598	0.19	-0.1
4,590,074	+		GFF4598	0.19	+0.2
4,590,074	+		GFF4598	0.19	-0.6
4,590,074	+		GFF4598	0.19	-1.4
4,590,074	+		GFF4598	0.19	-0.9
4,590,074	+		GFF4598	0.19	-0.0
4,590,082	-		GFF4598	0.20	-1.0
4,590,082	-		GFF4598	0.20	-1.4
4,590,082	-		GFF4598	0.20	-0.1
4,590,082	-		GFF4598	0.20	-1.7
4,590,082	-		GFF4598	0.20	+0.2
4,590,082	-		GFF4598	0.20	-1.4
4,590,082	-		GFF4598	0.20	-0.1
4,590,082	-		GFF4598	0.20	-2.7
4,590,082	-		GFF4598	0.20	-2.0
4,590,082	-		GFF4598	0.20	+0.5
4,590,082	-		GFF4598	0.20	-1.3
4,590,082	-		GFF4598	0.20	+0.7
4,590,082	-		GFF4598	0.20	-1.0
4,590,087	-		GFF4598	0.20	+1.1
4,590,109	-		GFF4598	0.23	+1.6
4,590,128	+		GFF4598	0.25	-0.3
4,590,133	+		GFF4598	0.25	+0.4
4,590,133	+		GFF4598	0.25	-0.1
4,590,133	+		GFF4598	0.25	-0.5
4,590,136	-		GFF4598	0.26	+0.4
4,590,141	-		GFF4598	0.26	-1.5
4,590,141	-		GFF4598	0.26	-1.4
4,590,141	-		GFF4598	0.26	-1.3
4,590,149	-		GFF4598	0.27	-1.0
4,590,161	+		GFF4598	0.29	+0.5
4,590,179	-		GFF4598	0.31	-2.8
4,590,179	-		GFF4598	0.31	+0.2
4,590,179	-		GFF4598	0.31	+1.0
4,590,179	-		GFF4598	0.31	+0.2
4,590,199	+		GFF4598	0.33	-1.4
4,590,202	+		GFF4598	0.33	-1.5
4,590,207	-		GFF4598	0.34	-1.5
4,590,207	-		GFF4598	0.34	-1.4
4,590,223	+		GFF4598	0.35	-2.7
4,590,228	-		GFF4598	0.36	-2.1
4,590,235	+		GFF4598	0.37	-0.4
4,590,235	+		GFF4598	0.37	-0.7
4,590,238	-		GFF4598	0.37	-1.4
4,590,248	-		GFF4598	0.38	+0.1
4,590,248	-		GFF4598	0.38	-0.4
4,590,248	-		GFF4598	0.38	-0.6
4,590,248	-		GFF4598	0.38	+0.8
4,590,253	-		GFF4598	0.39	+0.4
4,590,264	+		GFF4598	0.40	-0.4
4,590,287	+		GFF4598	0.42	-1.3
4,590,287	+		GFF4598	0.42	-0.5
4,590,287	+		GFF4598	0.42	-1.0
4,590,287	+		GFF4598	0.42	+0.6
4,590,295	-		GFF4598	0.43	+0.6
4,590,295	-		GFF4598	0.43	-0.6
4,590,295	-		GFF4598	0.43	-0.0
4,590,295	-		GFF4598	0.43	-0.8
4,590,295	-		GFF4598	0.43	-0.5
4,590,295	-		GFF4598	0.43	+1.5
4,590,325	+		GFF4598	0.46	+1.0
4,590,325	+		GFF4598	0.46	+0.4
4,590,333	-		GFF4598	0.47	+0.0
4,590,336	+		GFF4598	0.48	-1.4
4,590,336	+		GFF4598	0.48	-2.7
4,590,344	-		GFF4598	0.48	+0.4
4,590,346	+		GFF4598	0.49	-1.4
4,590,348	+		GFF4598	0.49	-0.5
4,590,354	-		GFF4598	0.50	+0.8
4,590,356	+		GFF4598	0.50	-0.6
4,590,370	+		GFF4598	0.51	-0.1
4,590,378	-		GFF4598	0.52	-0.8
4,590,428	+		GFF4598	0.58	-0.6
4,590,428	+		GFF4598	0.58	-1.1
4,590,429	-		GFF4598	0.58	-0.4
4,590,445	-		GFF4598	0.59	-2.2
4,590,447	+		GFF4598	0.60	+1.0
4,590,447	+		GFF4598	0.60	+0.9
4,590,455	-		GFF4598	0.61	+0.9
4,590,455	-		GFF4598	0.61	-0.2
4,590,460	-		GFF4598	0.61	-0.9
4,590,462	-		GFF4598	0.61	+0.7
4,590,481	+		GFF4598	0.63	-2.8
4,590,481	+		GFF4598	0.63	-0.5
4,590,489	-		GFF4598	0.64	+0.3
4,590,497	-		GFF4598	0.65	-1.0
4,590,518	+		GFF4598	0.67	-1.0
4,590,525	+		GFF4598	0.68	-1.8
4,590,533	-		GFF4598	0.69	-2.4
4,590,533	-		GFF4598	0.69	-0.6
4,590,569	+		GFF4598	0.73	+0.1
4,590,569	+		GFF4598	0.73	+0.4
4,590,569	+		GFF4598	0.73	+0.8
4,590,575	-		GFF4598	0.74	-0.5
4,590,577	-		GFF4598	0.74	-2.0
4,590,578	+		GFF4598	0.74	-0.5
4,590,581	+		GFF4598	0.74	-0.7
4,590,583	+		GFF4598	0.75	-2.2
4,590,594	+		GFF4598	0.76	-0.3
4,590,602	+		GFF4598	0.77	-0.5
4,590,651	+		GFF4598	0.82	-0.8
4,590,660	+		GFF4598	0.83	+0.7
4,590,680	+		GFF4598	0.85	+0.2
4,590,680	+		GFF4598	0.85	-1.7
4,590,714	+		GFF4598	0.89	+0.8
4,590,721	-		GFF4598	0.90	-0.2
4,590,742	-				-0.3
4,590,745	-				-0.7
4,590,760	+				-1.9
4,590,768	-				-2.1
4,590,784	+				+0.2
4,590,786	+				-0.6
4,590,792	-				-2.1
4,590,792	-				+0.2
4,590,792	-				-0.8
4,590,792	-				-2.1
4,590,792	-				+0.4
4,590,797	-				+0.6
4,590,809	-				-2.0
4,590,813	+				+0.3
4,590,813	+				+1.1
4,590,857	-				+0.6
4,590,859	-				-1.0
4,590,867	+				+0.0
4,590,872	+				+0.0
4,590,882	-				-0.3
4,590,903	+				-2.7
4,590,926	+				-0.1
4,590,941	+				+0.0
4,590,946	+				+0.2
4,590,946	+				+0.4
4,590,954	-				-2.4
4,590,959	+				-2.2
4,590,960	-				+0.3
4,590,977	-				-0.7
4,591,019	+				-0.8
4,591,019	+				-2.7
4,591,027	-		GFF4599	0.10	-1.5
4,591,027	-		GFF4599	0.10	-2.0
4,591,035	+		GFF4599	0.11	-1.9
4,591,055	-		GFF4599	0.12	+0.9
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