Strain Fitness in Sphingobium sp. HT1-2 around GFF4564

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,556,047	-				-1.5
4,556,047	-				+0.7
4,556,067	-				-2.4
4,556,067	-				-1.9
4,556,067	-				-0.2
4,556,689	+				-0.4
4,556,766	+				-1.1
4,556,766	+				+0.5
4,556,772	+				-0.9
4,556,773	-				+1.3
4,556,773	-				-0.3
4,556,773	-				+0.4
4,556,773	-				-1.6
4,556,774	-				-1.1
4,556,774	-				-1.5
4,556,797	-				-1.9
4,556,819	-				-1.4
4,556,819	-				-1.1
4,556,819	-				-2.2
4,556,838	+				-0.4
4,556,846	-				-0.3
4,556,856	-				-1.7
4,556,857	+				-0.4
4,556,857	+				+0.2
4,556,857	+				-0.4
4,556,865	-				-0.5
4,556,865	-				-0.3
4,556,865	-				-0.0
4,556,877	+				-1.5
4,556,883	-				+0.7
4,556,890	-				-1.3
4,556,909	+				+0.1
4,556,918	-				+0.3
4,556,919	+				-0.1
4,556,925	+		GFF4564	0.10	-1.2
4,556,925	+		GFF4564	0.10	-0.5
4,556,925	+		GFF4564	0.10	+0.9
4,556,925	+		GFF4564	0.10	-0.4
4,556,925	+		GFF4564	0.10	-1.7
4,556,925	+		GFF4564	0.10	-3.0
4,556,925	+		GFF4564	0.10	+0.5
4,556,925	+		GFF4564	0.10	-0.3
4,556,927	+		GFF4564	0.10	-0.6
4,556,927	+		GFF4564	0.10	-0.9
4,556,927	+		GFF4564	0.10	+0.9
4,556,927	+		GFF4564	0.10	-1.4
4,556,933	-		GFF4564	0.11	+1.0
4,556,933	-		GFF4564	0.11	-0.2
4,556,933	-		GFF4564	0.11	-0.0
4,556,933	-		GFF4564	0.11	+0.6
4,556,933	-		GFF4564	0.11	-0.7
4,556,933	-		GFF4564	0.11	-1.6
4,556,933	-		GFF4564	0.11	-1.4
4,556,933	-		GFF4564	0.11	+0.6
4,556,933	-		GFF4564	0.11	+0.5
4,556,937	+		GFF4564	0.11	+0.8
4,556,937	+		GFF4564	0.11	+0.5
4,556,937	+		GFF4564	0.11	+0.2
4,556,945	-		GFF4564	0.11	+0.2
4,556,945	-		GFF4564	0.11	+0.9
4,556,945	-		GFF4564	0.11	-0.5
4,556,947	+		GFF4564	0.11	-0.1
4,556,975	+		GFF4564	0.13	+0.7
4,556,983	-		GFF4564	0.14	-0.5
4,556,990	-		GFF4564	0.14	+0.1
4,556,990	-		GFF4564	0.14	+0.7
4,557,040	-		GFF4564	0.17	-0.4
4,557,046	+		GFF4564	0.18	+0.1
4,557,056	+		GFF4564	0.18	-0.6
4,557,056	+		GFF4564	0.18	-0.8
4,557,056	+		GFF4564	0.18	-0.1
4,557,058	+		GFF4564	0.19	+0.2
4,557,064	-		GFF4564	0.19	-0.1
4,557,085	+		GFF4564	0.20	+0.1
4,557,085	-		GFF4564	0.20	-1.6
4,557,112	-		GFF4564	0.22	-0.3
4,557,114	+		GFF4564	0.22	-2.6
4,557,114	+		GFF4564	0.22	+0.7
4,557,114	+		GFF4564	0.22	+0.5
4,557,114	+		GFF4564	0.22	-1.5
4,557,114	+		GFF4564	0.22	-1.2
4,557,114	+		GFF4564	0.22	-1.2
4,557,114	+		GFF4564	0.22	-0.0
4,557,114	+		GFF4564	0.22	-0.4
4,557,117	-		GFF4564	0.22	+0.5
4,557,117	-		GFF4564	0.22	-1.0
4,557,119	+		GFF4564	0.23	-0.8
4,557,122	-		GFF4564	0.23	-1.7
4,557,122	-		GFF4564	0.23	-1.1
4,557,127	-		GFF4564	0.23	+1.0
4,557,127	-		GFF4564	0.23	+0.5
4,557,127	-		GFF4564	0.23	+0.1
4,557,132	+		GFF4564	0.23	-0.6
4,557,138	-		GFF4564	0.24	-1.0
4,557,140	-		GFF4564	0.24	-0.4
4,557,150	-		GFF4564	0.24	-1.8
4,557,172	-		GFF4564	0.26	-1.6
4,557,172	-		GFF4564	0.26	-0.2
4,557,177	+		GFF4564	0.26	+0.6
4,557,184	+		GFF4564	0.27	-0.7
4,557,185	-		GFF4564	0.27	+0.5
4,557,200	+		GFF4564	0.28	+0.2
4,557,200	+		GFF4564	0.28	+0.2
4,557,200	+		GFF4564	0.28	-1.9
4,557,200	+		GFF4564	0.28	+0.4
4,557,208	-		GFF4564	0.28	+1.1
4,557,208	-		GFF4564	0.28	-1.9
4,557,224	+		GFF4564	0.29	+0.2
4,557,225	+		GFF4564	0.29	+0.3
4,557,225	+		GFF4564	0.29	-1.3
4,557,231	-		GFF4564	0.30	-0.1
4,557,232	-		GFF4564	0.30	-1.7
4,557,232	-		GFF4564	0.30	-0.6
4,557,234	+		GFF4564	0.30	-0.3
4,557,248	-		GFF4564	0.31	-0.9
4,557,248	-		GFF4564	0.31	-0.4
4,557,249	-		GFF4564	0.31	-0.6
4,557,249	-		GFF4564	0.31	-0.6
4,557,249	-		GFF4564	0.31	-0.5
4,557,249	-		GFF4564	0.31	-1.9
4,557,261	-		GFF4564	0.32	-2.2
4,557,262	+		GFF4564	0.32	-1.3
4,557,262	+		GFF4564	0.32	-0.6
4,557,268	+		GFF4564	0.32	+0.6
4,557,270	-		GFF4564	0.32	-1.3
4,557,289	+		GFF4564	0.33	-1.6
4,557,289	+		GFF4564	0.33	-2.4
4,557,289	+		GFF4564	0.33	-1.6
4,557,289	+		GFF4564	0.33	+0.1
4,557,289	+		GFF4564	0.33	+0.5
4,557,289	+		GFF4564	0.33	+0.7
4,557,289	+		GFF4564	0.33	-0.3
4,557,289	+		GFF4564	0.33	-2.5
4,557,289	+		GFF4564	0.33	-0.1
4,557,297	-		GFF4564	0.34	+0.1
4,557,297	-		GFF4564	0.34	-1.1
4,557,297	-		GFF4564	0.34	-0.6
4,557,297	-		GFF4564	0.34	+1.1
4,557,297	-		GFF4564	0.34	+0.6
4,557,297	-		GFF4564	0.34	+0.3
4,557,297	-		GFF4564	0.34	+0.6
4,557,302	+		GFF4564	0.34	-2.6
4,557,302	+		GFF4564	0.34	+0.7
4,557,302	+		GFF4564	0.34	+0.1
4,557,307	+		GFF4564	0.35	-1.1
4,557,329	+		GFF4564	0.36	+0.3
4,557,337	-		GFF4564	0.36	-0.5
4,557,360	+		GFF4564	0.38	+0.2
4,557,368	-		GFF4564	0.38	-0.2
4,557,370	-		GFF4564	0.39	+0.2
4,557,394	-		GFF4564	0.40	-0.8
4,557,396	+		GFF4564	0.40	-0.1
4,557,402	-		GFF4564	0.41	+0.4
4,557,404	-		GFF4564	0.41	-0.0
4,557,404	-		GFF4564	0.41	-0.0
4,557,404	-		GFF4564	0.41	+1.2
4,557,468	-		GFF4564	0.45	-1.4
4,557,484	+		GFF4564	0.46	-0.5
4,557,489	+		GFF4564	0.46	-0.6
4,557,500	+		GFF4564	0.47	-1.7
4,557,521	-		GFF4564	0.48	-0.1
4,557,523	+		GFF4564	0.48	+0.2
4,557,523	+		GFF4564	0.48	+0.1
4,557,547	+		GFF4564	0.50	-0.1
4,557,547	+		GFF4564	0.50	-1.6
4,557,551	+		GFF4564	0.50	-0.7
4,557,555	-		GFF4564	0.50	+0.5
4,557,581	-		GFF4564	0.52	-2.4
4,557,593	+		GFF4564	0.53	-1.9
4,557,610	-		GFF4564	0.54	-0.7
4,557,610	-		GFF4564	0.54	-1.2
4,557,621	-		GFF4564	0.55	-0.2
4,557,664	-		GFF4564	0.57	-0.6
4,557,664	-		GFF4564	0.57	-0.2
4,557,668	+		GFF4564	0.58	-0.6
4,557,669	-		GFF4564	0.58	-1.5
4,557,697	-		GFF4564	0.60	-1.1
4,557,710	+		GFF4564	0.60	+1.2
4,557,729	-		GFF4564	0.62	-1.0
4,557,729	-		GFF4564	0.62	-0.9
4,557,729	-		GFF4564	0.62	+0.3
4,557,772	+		GFF4564	0.64	-0.5
4,557,782	+		GFF4564	0.65	+0.3
4,557,782	+		GFF4564	0.65	+1.0
4,557,782	+		GFF4564	0.65	+0.2
4,557,782	+		GFF4564	0.65	-1.9
4,557,782	+		GFF4564	0.65	+0.1
4,557,782	+		GFF4564	0.65	-0.1
4,557,782	+		GFF4564	0.65	-1.3
4,557,782	+		GFF4564	0.65	+0.6
4,557,788	-		GFF4564	0.65	-0.3
4,557,788	-		GFF4564	0.65	-2.3
4,557,790	-		GFF4564	0.66	-1.1
4,557,790	-		GFF4564	0.66	-0.0
4,557,790	-		GFF4564	0.66	-2.3
4,557,790	-		GFF4564	0.66	-0.5
4,557,790	-		GFF4564	0.66	-0.8
4,557,790	-		GFF4564	0.66	-0.7
4,557,790	-		GFF4564	0.66	-0.3
4,557,790	-		GFF4564	0.66	+0.1
4,557,790	-		GFF4564	0.66	+0.3
4,557,790	-		GFF4564	0.66	-1.8
4,557,790	-		GFF4564	0.66	-0.0
4,557,790	-		GFF4564	0.66	-0.2
4,557,790	-		GFF4564	0.66	-1.0
4,557,792	-		GFF4564	0.66	+1.2
4,557,795	-		GFF4564	0.66	-2.0
4,557,800	-		GFF4564	0.66	+0.1
4,557,808	-		GFF4564	0.67	-1.7
4,557,808	-		GFF4564	0.67	+0.1
4,557,808	-		GFF4564	0.67	+1.1
4,557,808	-		GFF4564	0.67	-1.5
4,557,809	+		GFF4564	0.67	-0.4
4,557,836	+		GFF4564	0.68	+0.2
4,557,836	+		GFF4564	0.68	+0.6
4,557,841	+		GFF4564	0.69	-1.0
4,557,844	-		GFF4564	0.69	-1.3
4,557,844	-		GFF4564	0.69	-0.5
4,557,844	-		GFF4564	0.69	-0.0
4,557,844	-		GFF4564	0.69	-0.2
4,557,844	-		GFF4564	0.69	+0.4
4,557,844	-		GFF4564	0.69	+1.1
4,557,845	-		GFF4564	0.69	-0.5
4,557,846	+		GFF4564	0.69	+1.3
4,557,849	-		GFF4564	0.69	-0.6
4,557,854	-		GFF4564	0.70	-1.3
4,557,855	+		GFF4564	0.70	-0.5
4,557,874	+		GFF4564	0.71	-0.2
4,557,876	-		GFF4564	0.71	-1.5
4,557,882	-		GFF4564	0.71	-2.5
4,557,882	-		GFF4564	0.71	-1.6
4,557,883	-		GFF4564	0.71	+1.1
4,557,906	+		GFF4564	0.73	-1.4
4,557,908	-		GFF4564	0.73	-1.4
4,557,918	+		GFF4564	0.74	-0.2
4,557,925	+		GFF4564	0.74	+0.7
4,557,943	-		GFF4564	0.75	-1.8
4,557,943	-		GFF4564	0.75	-1.2
4,557,946	+		GFF4564	0.76	+0.2
4,557,951	+		GFF4564	0.76	-0.4
4,557,951	+		GFF4564	0.76	-0.4
4,557,951	+		GFF4564	0.76	-1.5
4,557,954	-		GFF4564	0.76	-0.1
4,557,954	-		GFF4564	0.76	-2.0
4,557,967	-		GFF4564	0.77	-0.1
4,557,977	+		GFF4564	0.78	-0.6
4,557,985	-		GFF4564	0.78	+0.9
4,557,985	-		GFF4564	0.78	+1.4
4,557,989	-		GFF4564	0.78	-0.6
4,557,992	+		GFF4564	0.78	-1.1
4,557,997	+		GFF4564	0.79	+1.3
4,558,000	-		GFF4564	0.79	-0.6
4,558,005	-		GFF4564	0.79	-1.8
4,558,031	-		GFF4564	0.81	-0.3
4,558,062	-		GFF4564	0.83	+1.6
4,558,063	+		GFF4564	0.83	-1.5
4,558,071	-		GFF4564	0.84	-0.3
4,558,084	-		GFF4564	0.84	-2.4
4,558,090	-		GFF4564	0.85	-1.6
4,558,110	+		GFF4564	0.86	-0.6
4,558,111	+		GFF4564	0.86	-0.4
4,558,116	+		GFF4564	0.86	-0.2
4,558,121	+		GFF4564	0.87	-0.6
4,558,121	+		GFF4564	0.87	+0.8
4,558,124	-		GFF4564	0.87	+0.7
4,558,128	+		GFF4564	0.87	+0.7
4,558,129	-		GFF4564	0.87	+0.6
4,558,129	-		GFF4564	0.87	-0.7
4,558,129	-		GFF4564	0.87	-0.4
4,558,129	-		GFF4564	0.87	-1.8
4,558,129	-		GFF4564	0.87	+0.9
4,558,129	-		GFF4564	0.87	-0.3
4,558,129	-		GFF4564	0.87	+0.0
4,558,129	-		GFF4564	0.87	+0.6
4,558,129	-		GFF4564	0.87	+0.9
4,558,129	-		GFF4564	0.87	-0.3
4,558,129	-		GFF4564	0.87	+0.3
4,558,157	+		GFF4564	0.89	-0.9
4,558,157	+		GFF4564	0.89	+0.2
4,558,178	-				+0.0
4,558,191	+				-0.8
4,558,201	+				-0.8
4,558,201	+				+0.3
4,558,206	-				-0.9
4,558,233	+				-0.8
4,558,238	+				+1.2
4,558,241	-				+1.1
4,558,241	-				-1.0
4,558,241	-				-0.5
4,558,246	-				-2.3
4,558,255	+				-3.0
4,558,255	+				-0.3
4,558,255	+				-1.3
4,558,255	+				-0.1
4,558,255	+				-0.7
4,558,255	+				-1.5
4,558,260	+				-1.5
4,558,260	+				-1.7
4,558,260	+				-0.4
4,558,260	+				-0.3
4,558,260	+				-0.8
4,558,260	+				-1.0
4,558,263	-				-2.9
4,558,263	-				-0.1
4,558,263	-				+0.1
4,558,263	-				-0.2
4,558,263	-				+0.2
4,558,263	-				-0.4
4,558,263	-				+0.7
4,558,265	+				-1.5
4,558,268	-				+0.1
4,558,268	-				-0.5
4,558,268	-				-0.0
4,558,268	-				-1.5
4,558,268	-				-0.3
4,558,268	-				-0.7
4,558,268	-				+0.2
4,558,268	-				+0.3
4,558,273	-				+0.5
4,558,300	+				-0.7
4,558,300	+				-0.3
4,558,325	+				-0.2
4,558,353	-				-1.6
4,558,404	-		GFF4565	0.54	+1.1
4,558,411	+		GFF4565	0.60	+0.8
4,558,420	+		GFF4565	0.68	-3.0
4,558,421	-		GFF4565	0.68	-0.9
4,558,437	+		GFF4565	0.82	+0.4
4,558,437	+		GFF4565	0.82	-0.1
4,558,437	+		GFF4565	0.82	-2.2
4,558,437	+		GFF4565	0.82	-0.3
4,558,443	+		GFF4565	0.88	-2.2
4,558,451	-				+0.8
4,558,458	+				-1.3
4,558,470	+				+0.5
4,558,470	+				+0.3
4,558,470	+				-0.4
4,558,470	+				+0.6
4,558,470	+				-0.9
4,558,470	+				-1.3
4,558,470	+				+1.4
4,558,470	+				-2.3
4,558,475	+				-0.9
4,558,478	-				-0.9
4,558,478	-				-0.5
4,558,478	-				-0.1
4,558,478	-				+0.2
4,558,478	-				-0.1
4,558,478	-				+0.5
4,558,489	+				-1.9
4,558,494	+				+0.3
4,558,494	+				-0.2
4,558,497	-				-0.7
4,558,507	+				-1.0
4,558,509	+				+0.4
4,558,509	+				-1.3
4,558,509	+				-2.1
4,558,509	+				+0.1
4,558,511	+				+0.3
4,558,517	-				+0.5
4,558,517	-				-3.0
4,558,517	-				+0.1
4,558,517	-				+0.6
4,558,517	-				+0.4
4,558,517	-				+0.7
4,558,520	+				+0.1
4,558,522	-				+0.6
4,558,554	-				-1.5
4,558,567	+		GFF4566	0.10	+0.8
4,558,567	+		GFF4566	0.10	-0.4
4,558,567	+		GFF4566	0.10	+0.6
4,558,567	+		GFF4566	0.10	-0.6
4,558,567	+		GFF4566	0.10	+0.9
4,558,567	+		GFF4566	0.10	+0.4
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