Strain Fitness in Sphingobium sp. HT1-2 around GFF4496

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,487,364	+		GFF4494	0.76	-1.2
4,487,369	+		GFF4494	0.76	+0.6
4,487,377	-		GFF4494	0.76	+0.3
4,487,384	+		GFF4494	0.77	-0.3
4,487,408	-		GFF4494	0.78	-0.4
4,487,438	-		GFF4494	0.79	-0.4
4,487,439	-		GFF4494	0.79	+1.2
4,487,507	+		GFF4494	0.82	+0.4
4,487,507	+		GFF4494	0.82	+0.3
4,487,516	-		GFF4494	0.82	+1.9
4,487,516	-		GFF4494	0.82	-1.9
4,487,529	+		GFF4494	0.83	+0.5
4,487,555	+		GFF4494	0.84	+0.4
4,487,555	+		GFF4494	0.84	+1.4
4,487,563	-		GFF4494	0.84	-0.9
4,487,563	-		GFF4494	0.84	-0.2
4,487,563	-		GFF4494	0.84	-2.3
4,487,563	-		GFF4494	0.84	+0.7
4,487,571	-		GFF4494	0.85	+0.4
4,487,631	-		GFF4494	0.87	-0.1
4,487,645	+		GFF4494	0.88	-0.2
4,487,653	-		GFF4494	0.88	-0.6
4,487,664	-		GFF4494	0.89	+0.1
4,487,664	-		GFF4494	0.89	-2.5
4,487,679	+		GFF4494	0.89	+0.6
4,487,679	+		GFF4494	0.89	+0.9
4,487,682	-		GFF4494	0.89	-2.0
4,487,687	-		GFF4494	0.90	+0.5
4,487,687	-		GFF4494	0.90	+0.7
4,487,688	-		GFF4494	0.90	-1.6
4,487,690	+		GFF4494	0.90	-0.3
4,487,690	+		GFF4494	0.90	-1.2
4,487,690	+		GFF4494	0.90	-0.8
4,487,690	+		GFF4494	0.90	-0.8
4,487,690	+		GFF4494	0.90	-1.9
4,487,690	+		GFF4494	0.90	+1.2
4,487,690	+		GFF4494	0.90	+0.8
4,487,690	+		GFF4494	0.90	+0.1
4,487,698	-				+0.2
4,487,698	-				+1.1
4,487,698	-				-0.9
4,487,698	-				+0.2
4,487,698	-				+0.2
4,487,698	-				-0.1
4,487,698	-				-0.8
4,487,705	+				-1.9
4,487,709	-				+0.2
4,487,710	-				-1.5
4,487,713	-				-0.6
4,487,736	-				+0.2
4,487,755	-				-0.6
4,487,758	+				+1.4
4,487,763	+				+0.2
4,487,783	+				-2.0
4,487,809	+				+0.2
4,487,814	+				-0.5
4,487,814	+				+0.5
4,487,814	+				-1.9
4,487,814	+				-1.4
4,487,814	+				+0.5
4,487,817	-				+0.4
4,487,817	-				+0.5
4,487,819	+				+0.8
4,487,822	-				-0.4
4,487,822	-				+0.3
4,487,822	-				-0.2
4,487,822	-				-0.4
4,487,827	-				-1.9
4,487,827	-				+0.9
4,487,832	-				-1.9
4,487,860	+				+0.3
4,487,874	+				+0.1
4,487,874	+				-0.4
4,487,882	-				-0.3
4,487,897	+				-0.4
4,487,897	+				+1.0
4,487,899	+				+0.2
4,487,911	+				-0.5
4,487,935	+				-0.2
4,487,943	-				+1.1
4,487,961	+				+0.6
4,487,965	+				+0.5
4,487,969	-		GFF4495	0.10	+0.1
4,487,971	+		GFF4495	0.11	+0.9
4,487,994	+		GFF4495	0.17	+1.6
4,488,004	+		GFF4495	0.19	-0.3
4,488,007	+		GFF4495	0.20	+0.3
4,488,008	-		GFF4495	0.20	+1.1
4,488,009	+		GFF4495	0.20	-0.5
4,488,012	-		GFF4495	0.21	+1.3
4,488,015	-		GFF4495	0.22	+0.5
4,488,017	-		GFF4495	0.22	+0.6
4,488,025	+		GFF4495	0.25	+1.9
4,488,033	-		GFF4495	0.27	+2.3
4,488,040	+		GFF4495	0.28	+0.1
4,488,051	+		GFF4495	0.31	-0.8
4,488,060	+		GFF4495	0.34	+0.2
4,488,065	+		GFF4495	0.35	-0.4
4,488,139	+		GFF4495	0.54	-0.9
4,488,156	+		GFF4495	0.58	+0.6
4,488,159	+		GFF4495	0.59	-1.0
4,488,159	+		GFF4495	0.59	-1.2
4,488,159	+		GFF4495	0.59	+0.1
4,488,159	+		GFF4495	0.59	-0.3
4,488,166	+		GFF4495	0.61	-0.3
4,488,166	+		GFF4495	0.61	+0.1
4,488,166	+		GFF4495	0.61	+0.7
4,488,167	-		GFF4495	0.61	+0.4
4,488,167	-		GFF4495	0.61	-1.6
4,488,167	-		GFF4495	0.61	-1.3
4,488,167	-		GFF4495	0.61	-0.3
4,488,167	-		GFF4495	0.61	+0.4
4,488,167	-		GFF4495	0.61	+1.1
4,488,167	-		GFF4495	0.61	+0.8
4,488,174	-		GFF4495	0.63	+0.9
4,488,174	-		GFF4495	0.63	+0.6
4,488,174	-		GFF4495	0.63	+0.0
4,488,184	+		GFF4495	0.66	+0.1
4,488,192	-		GFF4495	0.68	+0.6
4,488,234	+		GFF4495	0.79	-0.8
4,488,242	+		GFF4495	0.81	-0.5
4,488,250	-		GFF4495	0.83	+0.5
4,488,253	+		GFF4495	0.83	-0.4
4,488,254	+		GFF4495	0.84	-0.0
4,488,259	+		GFF4495	0.85	+0.9
4,488,261	+		GFF4495	0.86	-0.7
4,488,262	-		GFF4495	0.86	+0.6
4,488,267	-		GFF4495	0.87	-1.9
4,488,274	-		GFF4495	0.89	-1.2
4,488,288	+				-0.8
4,488,296	-				+1.5
4,488,302	+				+0.3
4,488,364	+		GFF4496	0.25	-1.3
4,488,391	+		GFF4496	0.41	-0.5
4,488,395	-		GFF4496	0.43	+0.5
4,488,410	+		GFF4496	0.51	+0.9
4,488,431	-		GFF4496	0.63	-0.0
4,488,434	-		GFF4496	0.65	+0.5
4,488,449	-		GFF4496	0.73	-0.5
4,488,463	+		GFF4496	0.81	-0.9
4,488,489	+				-0.0
4,488,489	+				+0.4
4,488,489	+				+0.8
4,488,489	+				-1.6
4,488,489	+				+1.1
4,488,489	+				+1.6
4,488,497	-				-1.0
4,488,497	-				+0.4
4,488,497	-				-1.1
4,488,497	-				-0.4
4,488,515	-				-0.1
4,488,542	-				-1.2
4,488,542	-				+0.7
4,488,544	+				-0.8
4,488,552	-				+1.0
4,488,571	-				+0.4
4,488,609	-				+1.2
4,488,653	-				-1.4
4,488,660	-				-2.3
4,488,670	+		GFF4497	0.12	+0.3
4,488,672	+		GFF4497	0.12	+1.2
4,488,680	-		GFF4497	0.15	+0.8
4,488,743	-		GFF4497	0.33	+0.8
4,488,744	-		GFF4497	0.34	-0.4
4,488,744	-		GFF4497	0.34	+0.6
4,488,762	+		GFF4497	0.39	+1.1
4,488,762	+		GFF4497	0.39	+1.4
4,488,762	+		GFF4497	0.39	-0.1
4,488,762	+		GFF4497	0.39	-0.1
4,488,762	+		GFF4497	0.39	-0.4
4,488,762	+		GFF4497	0.39	+0.1
4,488,762	+		GFF4497	0.39	+0.4
4,488,762	+		GFF4497	0.39	+0.4
4,488,762	+		GFF4497	0.39	-0.6
4,488,769	+		GFF4497	0.41	+1.2
4,488,776	-		GFF4497	0.43	+0.6
4,488,802	+		GFF4497	0.51	+0.8
4,488,802	+		GFF4497	0.51	-1.0
4,488,802	+		GFF4497	0.51	-0.5
4,488,809	+		GFF4497	0.53	+1.4
4,488,809	+		GFF4497	0.53	-0.1
4,488,809	+		GFF4497	0.53	+0.8
4,488,809	+		GFF4497	0.53	+0.1
4,488,809	+		GFF4497	0.53	+0.3
4,488,809	+		GFF4497	0.53	-1.2
4,488,810	-		GFF4497	0.53	+0.6
4,488,814	+		GFF4497	0.54	-0.3
4,488,817	-		GFF4497	0.55	-0.1
4,488,817	-		GFF4497	0.55	-1.2
4,488,817	-		GFF4497	0.55	-0.9
4,488,817	-		GFF4497	0.55	-2.5
4,488,817	-		GFF4497	0.55	+0.8
4,488,817	-		GFF4497	0.55	-0.8
4,488,817	-		GFF4497	0.55	-0.3
4,488,817	-		GFF4497	0.55	+1.1
4,488,817	-		GFF4497	0.55	+0.1
4,488,833	+		GFF4497	0.60	+0.4
4,488,836	-		GFF4497	0.61	+0.6
4,488,840	+		GFF4497	0.62	+0.2
4,488,840	+		GFF4497	0.62	-0.8
4,488,840	+		GFF4497	0.62	+0.5
4,488,840	+		GFF4497	0.62	-0.1
4,488,840	+		GFF4497	0.62	-0.5
4,488,840	+		GFF4497	0.62	-1.2
4,488,840	+		GFF4497	0.62	+0.2
4,488,840	+		GFF4497	0.62	+1.7
4,488,841	-		GFF4497	0.62	-0.9
4,488,846	+		GFF4497	0.64	+0.2
4,488,848	-		GFF4497	0.64	-0.9
4,488,848	-		GFF4497	0.64	+1.2
4,488,859	+		GFF4497	0.68	-1.1
4,488,867	-		GFF4497	0.70	+0.7
4,488,867	-		GFF4497	0.70	-1.1
4,488,891	-		GFF4497	0.77	+0.5
4,488,905	+		GFF4497	0.81	+0.9
4,488,939	-				+0.9
4,488,949	-				+0.1
4,488,949	-				+0.7
4,488,949	-				-0.5
4,488,953	+				-0.3
4,488,961	-				+0.9
4,488,961	-				-0.3
4,488,979	-				-1.2
4,488,993	+				+1.2
4,488,998	+				-0.4
4,489,007	+				+0.3
4,489,007	+				-0.5
4,489,032	+				+0.3
4,489,032	+				-1.0
4,489,032	+				-1.2
4,489,040	-				+0.6
4,489,040	-				-0.5
4,489,042	+				-1.5
4,489,045	-				+0.8
4,489,052	+				-0.1
4,489,052	-				-0.2
4,489,067	-				-1.4
4,489,074	+				+0.1
4,489,074	+				-1.9
4,489,074	+				-0.0
4,489,080	+				+1.4
4,489,082	-				-0.4
4,489,082	-				+0.2
4,489,082	-				+0.8
4,489,082	-				-0.3
4,489,082	-				+0.5
4,489,082	-				-1.5
4,489,085	+				-0.3
4,489,087	-				+0.1
4,489,090	+				-0.0
4,489,093	-				-1.6
4,489,106	+				+1.1
4,489,121	+				+0.6
4,489,124	+				+0.9
4,489,132	-				-1.9
4,489,172	+				+0.1
4,489,175	-				-1.5
4,489,175	-				+0.3
4,489,194	+				+0.2
4,489,210	+				+0.0
4,489,210	+				-0.2
4,489,212	-				+1.7
4,489,216	-				-1.5
4,489,218	-				+1.0
4,489,223	+				+1.8
4,489,223	+				-0.9
4,489,224	+				+1.9
4,489,231	-				-0.6
4,489,231	-				-0.9
4,489,231	-				-0.0
4,489,231	-				-1.4
4,489,236	-				+0.7
4,489,241	+				+1.1
4,489,241	+				-1.3
4,489,241	-				-0.3
4,489,241	-				-1.4
4,489,254	+				-0.0
4,489,256	+				-0.0
4,489,290	+				+0.1
4,489,290	+				-0.6
4,489,292	-				-0.0
4,489,298	+				-0.0
4,489,298	-				+0.1
4,489,300	+				+0.5
4,489,300	+				-0.9
4,489,309	+				-1.5
4,489,316	-				+0.1
4,489,330	+				-0.3
4,489,330	+				-0.4
4,489,330	+				-0.5
4,489,330	-				-0.1
4,489,337	-				-0.0
4,489,338	-				-1.8
4,489,348	+				+0.8
4,489,348	+				+0.2
4,489,348	+				-1.1
4,489,348	+				+0.5
4,489,351	-				+0.9
4,489,351	-				-0.5
4,489,356	-				+0.3
4,489,356	-				+0.5
4,489,356	-				-0.9
4,489,364	+				-0.7
4,489,373	-				-0.5
4,489,373	-				-0.0
4,489,382	+				-0.1
4,489,392	+				-0.0
4,489,400	-				+1.7
4,489,410	+		GFF4498	0.10	+0.5
4,489,410	+		GFF4498	0.10	+1.5
4,489,410	+		GFF4498	0.10	-1.0
4,489,411	+		GFF4498	0.10	-0.1
4,489,418	-		GFF4498	0.10	-1.8
4,489,418	-		GFF4498	0.10	-2.2
4,489,418	-		GFF4498	0.10	+0.2
4,489,420	+		GFF4498	0.10	-0.7
4,489,420	+		GFF4498	0.10	+0.5
4,489,423	-		GFF4498	0.11	+0.2
4,489,423	-		GFF4498	0.11	+0.8
4,489,423	-		GFF4498	0.11	+0.3
4,489,423	-		GFF4498	0.11	+0.1
4,489,428	-		GFF4498	0.11	+0.4
4,489,433	+		GFF4498	0.11	-1.8
4,489,433	+		GFF4498	0.11	-0.3
4,489,433	+		GFF4498	0.11	-0.3
4,489,433	+		GFF4498	0.11	+0.5
4,489,433	+		GFF4498	0.11	+1.4
4,489,433	+		GFF4498	0.11	+0.0
4,489,433	+		GFF4498	0.11	-0.3
4,489,441	-		GFF4498	0.11	-0.1
4,489,441	-		GFF4498	0.11	+1.1
4,489,441	-		GFF4498	0.11	-0.2
4,489,443	+		GFF4498	0.11	+0.4
4,489,451	-		GFF4498	0.12	+0.5
4,489,451	-		GFF4498	0.12	-0.7
4,489,451	-		GFF4498	0.12	-0.2
4,489,452	+		GFF4498	0.12	-1.4
4,489,452	+		GFF4498	0.12	-1.1
4,489,455	+		GFF4498	0.12	-1.8
4,489,457	+		GFF4498	0.12	-1.6
4,489,457	-		GFF4498	0.12	+0.8
4,489,459	-		GFF4498	0.12	-1.3
4,489,462	+		GFF4498	0.12	-2.1
4,489,462	+		GFF4498	0.12	+0.1
4,489,462	+		GFF4498	0.12	-2.0
4,489,462	+		GFF4498	0.12	+1.8
4,489,462	+		GFF4498	0.12	-0.6
4,489,465	-		GFF4498	0.12	-1.1
4,489,465	-		GFF4498	0.12	-1.5
4,489,470	-		GFF4498	0.12	-0.7
4,489,470	-		GFF4498	0.12	+1.0
4,489,470	-		GFF4498	0.12	-0.6
4,489,470	-		GFF4498	0.12	+0.6
4,489,470	-		GFF4498	0.12	-0.2
4,489,470	-		GFF4498	0.12	+0.0
4,489,470	-		GFF4498	0.12	-1.9
4,489,470	-		GFF4498	0.12	-0.1
4,489,475	-		GFF4498	0.12	+0.1
4,489,475	-		GFF4498	0.12	-0.1
4,489,475	-		GFF4498	0.12	+0.1
4,489,475	-		GFF4498	0.12	+0.8
4,489,476	+		GFF4498	0.12	-2.0
4,489,481	+		GFF4498	0.13	+1.1
4,489,481	+		GFF4498	0.13	-0.5
4,489,481	+		GFF4498	0.13	+0.1
4,489,484	-		GFF4498	0.13	+0.2
4,489,489	+		GFF4498	0.13	-0.0
4,489,489	-		GFF4498	0.13	-1.9
4,489,489	-		GFF4498	0.13	-1.9
4,489,489	-		GFF4498	0.13	-1.9
4,489,490	+		GFF4498	0.13	-1.9
4,489,490	+		GFF4498	0.13	+0.5
4,489,490	+		GFF4498	0.13	+0.5
4,489,490	+		GFF4498	0.13	+0.4
4,489,490	+		GFF4498	0.13	+0.8
4,489,490	+		GFF4498	0.13	+0.2
4,489,490	+		GFF4498	0.13	+0.6
4,489,492	+		GFF4498	0.13	-0.5