Strain Fitness in Sphingobium sp. HT1-2 around GFF4493

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,483,606	-		GFF4491	0.77	-0.3
4,483,642	-		GFF4491	0.80	+0.6
4,483,647	+		GFF4491	0.80	-0.1
4,483,647	-		GFF4491	0.80	+0.2
4,483,648	-		GFF4491	0.81	+0.5
4,483,648	-		GFF4491	0.81	+1.6
4,483,648	-		GFF4491	0.81	+0.1
4,483,655	+		GFF4491	0.81	-0.1
4,483,669	-		GFF4491	0.82	+0.5
4,483,694	-		GFF4491	0.84	-0.0
4,483,732	-		GFF4491	0.87	-2.1
4,483,758	+		GFF4491	0.89	+0.2
4,483,762	-		GFF4491	0.89	-0.4
4,483,806	+				-1.4
4,483,814	-				+0.8
4,483,819	-				+0.2
4,483,889	+				-1.3
4,483,889	+				-2.5
4,483,904	+				+0.1
4,483,914	+				+0.6
4,483,928	-				-0.5
4,483,928	-				-0.0
4,483,948	+				-2.1
4,483,988	+				-0.6
4,484,018	+		GFF4492	0.12	-1.4
4,484,018	+		GFF4492	0.12	+0.1
4,484,018	+		GFF4492	0.12	-0.9
4,484,018	+		GFF4492	0.12	-1.3
4,484,026	-		GFF4492	0.15	+0.6
4,484,026	-		GFF4492	0.15	-0.7
4,484,026	-		GFF4492	0.15	-0.4
4,484,034	+		GFF4492	0.18	-0.4
4,484,051	+		GFF4492	0.24	+0.1
4,484,051	+		GFF4492	0.24	-0.9
4,484,059	-		GFF4492	0.27	-0.4
4,484,067	-		GFF4492	0.30	+0.3
4,484,093	-		GFF4492	0.39	+0.5
4,484,106	+		GFF4492	0.44	-2.0
4,484,114	-		GFF4492	0.47	+0.3
4,484,114	-		GFF4492	0.47	+0.9
4,484,137	-		GFF4492	0.55	+0.2
4,484,141	+		GFF4492	0.57	-0.1
4,484,145	-		GFF4492	0.58	+0.3
4,484,189	-		GFF4492	0.74	+0.4
4,484,242	+				+0.7
4,484,250	+				+1.1
4,484,251	+				-0.4
4,484,259	-				+0.9
4,484,271	+				+0.5
4,484,287	+				+0.1
4,484,288	+				+1.8
4,484,288	+				+1.5
4,484,288	+				+1.0
4,484,309	-				+0.4
4,484,309	-				+0.1
4,484,309	-				-1.0
4,484,324	+				+0.0
4,484,347	+				-0.6
4,484,355	-				-0.3
4,484,355	-				+0.9
4,484,359	+				-2.3
4,484,370	-				-0.7
4,484,385	-				+0.1
4,484,397	-				-2.2
4,484,406	+				+0.8
4,484,412	-				-0.7
4,484,413	+				+0.1
4,484,436	-				+0.8
4,484,436	-				+1.7
4,484,447	-				-1.8
4,484,462	+				+1.1
4,484,463	+				-0.7
4,484,470	-				+0.5
4,484,470	-				-0.4
4,484,470	-				+0.9
4,484,471	-				-0.2
4,484,507	+				-0.7
4,484,507	+				+0.6
4,484,507	+				-0.7
4,484,515	-				+0.8
4,484,515	-				+0.2
4,484,516	+				-0.8
4,484,530	-				-0.1
4,484,530	-				+1.0
4,484,542	+				-0.9
4,484,557	+				+0.5
4,484,557	+				-2.1
4,484,557	+				-1.9
4,484,567	-				-0.0
4,484,572	+				-1.7
4,484,580	-				+1.2
4,484,610	+				-2.2
4,484,610	+				-0.4
4,484,611	-				-0.1
4,484,611	-				+0.9
4,484,611	-				+0.2
4,484,616	-				+1.3
4,484,616	-				+1.1
4,484,622	+				+0.3
4,484,622	+				-0.9
4,484,635	-				+0.3
4,484,639	-				-0.9
4,484,645	+				+0.6
4,484,653	-				-2.0
4,484,653	-				-2.1
4,484,653	-				+0.2
4,484,653	-				-0.7
4,484,653	-				-1.2
4,484,663	-		GFF4493	0.10	+0.7
4,484,663	-		GFF4493	0.10	-0.4
4,484,668	+		GFF4493	0.11	-1.4
4,484,676	-		GFF4493	0.12	+0.2
4,484,676	-		GFF4493	0.12	+0.8
4,484,676	-		GFF4493	0.12	+1.3
4,484,689	+		GFF4493	0.13	+0.2
4,484,691	-		GFF4493	0.13	+0.1
4,484,698	+		GFF4493	0.14	+0.3
4,484,706	-		GFF4493	0.15	+0.1
4,484,707	-		GFF4493	0.15	-0.6
4,484,724	+		GFF4493	0.17	-1.9
4,484,765	-		GFF4493	0.22	-0.2
4,484,770	+		GFF4493	0.22	-0.9
4,484,770	+		GFF4493	0.22	+0.5
4,484,778	-		GFF4493	0.23	+1.3
4,484,778	-		GFF4493	0.23	-0.1
4,484,778	-		GFF4493	0.23	+0.3
4,484,778	-		GFF4493	0.23	-0.0
4,484,778	-		GFF4493	0.23	+0.1
4,484,780	+		GFF4493	0.23	+0.3
4,484,820	+		GFF4493	0.28	-1.0
4,484,820	+		GFF4493	0.28	+0.1
4,484,820	+		GFF4493	0.28	-0.1
4,484,820	+		GFF4493	0.28	+0.8
4,484,825	+		GFF4493	0.28	+1.7
4,484,828	-		GFF4493	0.29	+0.1
4,484,828	-		GFF4493	0.29	+0.9
4,484,828	-		GFF4493	0.29	-0.5
4,484,828	-		GFF4493	0.29	-0.1
4,484,828	-		GFF4493	0.29	+1.4
4,484,828	-		GFF4493	0.29	+0.9
4,484,828	-		GFF4493	0.29	+1.2
4,484,828	-		GFF4493	0.29	-0.1
4,484,833	-		GFF4493	0.29	-0.3
4,484,839	+		GFF4493	0.30	+0.9
4,484,848	-		GFF4493	0.31	-1.4
4,484,864	-		GFF4493	0.33	+1.9
4,484,892	-		GFF4493	0.36	+1.5
4,484,910	-		GFF4493	0.38	-0.2
4,484,933	+		GFF4493	0.41	+1.2
4,484,981	+		GFF4493	0.46	-1.4
4,484,981	+		GFF4493	0.46	-0.8
4,484,981	+		GFF4493	0.46	-1.3
4,484,981	+		GFF4493	0.46	-0.0
4,484,981	+		GFF4493	0.46	-1.4
4,484,981	+		GFF4493	0.46	+0.2
4,484,981	+		GFF4493	0.46	+0.5
4,484,981	+		GFF4493	0.46	-1.1
4,484,981	+		GFF4493	0.46	-3.1
4,484,989	-		GFF4493	0.47	-0.2
4,484,989	-		GFF4493	0.47	+0.9
4,484,989	-		GFF4493	0.47	-0.7
4,484,989	-		GFF4493	0.47	+0.1
4,484,989	-		GFF4493	0.47	+0.2
4,484,989	-		GFF4493	0.47	-0.5
4,484,989	-		GFF4493	0.47	-0.0
4,484,989	-		GFF4493	0.47	-1.6
4,484,989	-		GFF4493	0.47	-1.5
4,484,989	-		GFF4493	0.47	+1.6
4,484,989	-		GFF4493	0.47	-0.9
4,484,989	-		GFF4493	0.47	+0.1
4,484,989	-		GFF4493	0.47	+0.2
4,484,989	-		GFF4493	0.47	+0.1
4,484,996	-		GFF4493	0.48	-0.4
4,485,010	+		GFF4493	0.49	+0.5
4,485,010	+		GFF4493	0.49	+0.3
4,485,010	+		GFF4493	0.49	+0.3
4,485,010	+		GFF4493	0.49	-0.7
4,485,015	+		GFF4493	0.50	+0.1
4,485,018	-		GFF4493	0.50	-1.6
4,485,018	-		GFF4493	0.50	+0.5
4,485,018	-		GFF4493	0.50	+0.2
4,485,018	-		GFF4493	0.50	+0.5
4,485,018	-		GFF4493	0.50	+2.1
4,485,020	+		GFF4493	0.50	+0.5
4,485,020	+		GFF4493	0.50	+1.9
4,485,023	-		GFF4493	0.51	+1.5
4,485,023	-		GFF4493	0.51	+1.4
4,485,023	-		GFF4493	0.51	-0.4
4,485,023	-		GFF4493	0.51	+0.7
4,485,028	-		GFF4493	0.51	-0.4
4,485,028	-		GFF4493	0.51	+0.2
4,485,028	-		GFF4493	0.51	+1.0
4,485,028	-		GFF4493	0.51	+0.5
4,485,028	-		GFF4493	0.51	-1.9
4,485,042	+		GFF4493	0.53	+0.3
4,485,043	+		GFF4493	0.53	+0.4
4,485,071	+		GFF4493	0.56	-0.5
4,485,071	+		GFF4493	0.56	+0.3
4,485,078	-		GFF4493	0.57	+1.5
4,485,079	-		GFF4493	0.57	-0.9
4,485,085	+		GFF4493	0.58	+1.8
4,485,085	+		GFF4493	0.58	+0.2
4,485,093	-		GFF4493	0.59	+0.2
4,485,093	-		GFF4493	0.59	+1.1
4,485,093	-		GFF4493	0.59	+0.6
4,485,119	+		GFF4493	0.62	+0.5
4,485,124	+		GFF4493	0.62	-0.5
4,485,124	+		GFF4493	0.62	+0.4
4,485,132	-		GFF4493	0.63	+0.9
4,485,202	+		GFF4493	0.71	-0.4
4,485,210	-		GFF4493	0.72	+1.1
4,485,236	+		GFF4493	0.75	-2.3
4,485,236	+		GFF4493	0.75	-2.2
4,485,244	-		GFF4493	0.76	+0.1
4,485,247	+		GFF4493	0.76	-1.2
4,485,254	+		GFF4493	0.77	+0.4
4,485,257	-		GFF4493	0.77	-1.4
4,485,290	+		GFF4493	0.81	+0.7
4,485,295	+		GFF4493	0.81	+1.1
4,485,295	+		GFF4493	0.81	+0.1
4,485,295	+		GFF4493	0.81	-0.3
4,485,295	+		GFF4493	0.81	-0.2
4,485,295	+		GFF4493	0.81	-0.9
4,485,295	+		GFF4493	0.81	+0.1
4,485,295	+		GFF4493	0.81	+0.8
4,485,298	-		GFF4493	0.82	+1.5
4,485,298	-		GFF4493	0.82	-0.1
4,485,298	-		GFF4493	0.82	-0.6
4,485,300	+		GFF4493	0.82	+0.3
4,485,303	-		GFF4493	0.82	-0.1
4,485,303	-		GFF4493	0.82	-2.2
4,485,303	-		GFF4493	0.82	-0.5
4,485,303	-		GFF4493	0.82	+0.5
4,485,303	-		GFF4493	0.82	-1.3
4,485,303	-		GFF4493	0.82	+0.8
4,485,318	-		GFF4493	0.84	+0.8
4,485,326	+		GFF4493	0.85	+0.7
4,485,377	-				+0.3
4,485,417	+				-2.1
4,485,417	+				-0.8
4,485,417	+				+1.0
4,485,417	+				+0.7
4,485,467	+				+1.0
4,485,475	-				+0.7
4,485,475	-				+0.9
4,485,475	-				-0.9
4,485,511	-				-0.2
4,485,554	+				+0.8
4,485,566	+				-0.9
4,485,566	+				+0.4
4,485,572	-				+0.6
4,485,574	+				-1.2
4,485,574	-				-0.4
4,485,579	-				+0.4
4,485,587	+				-1.8
4,485,595	-				+0.9
4,485,595	-				-1.7
4,485,597	+				-1.4
4,485,605	-				+0.4
4,485,615	+				+1.2
4,485,615	+				-0.2
4,485,623	-				-0.3
4,485,644	-				-1.7
4,485,699	-				-1.9
4,485,763	-				+1.7
4,485,771	+				-1.4
4,485,800	+				-1.4
4,485,819	+		GFF4494	0.11	-1.0
4,485,824	+		GFF4494	0.11	-0.0
4,485,825	+		GFF4494	0.11	+1.3
4,485,825	+		GFF4494	0.11	+1.3
4,485,830	+		GFF4494	0.11	-2.3
4,485,830	+		GFF4494	0.11	-0.7
4,485,833	-		GFF4494	0.11	-0.3
4,485,833	-		GFF4494	0.11	-0.0
4,485,833	-		GFF4494	0.11	+1.5
4,485,833	-		GFF4494	0.11	+1.0
4,485,835	+		GFF4494	0.11	+1.1
4,485,835	+		GFF4494	0.11	+0.2
4,485,844	+		GFF4494	0.12	-0.8
4,485,844	+		GFF4494	0.12	+0.6
4,485,844	+		GFF4494	0.12	+0.3
4,485,852	-		GFF4494	0.12	+1.2
4,485,863	-		GFF4494	0.13	-0.1
4,485,864	-		GFF4494	0.13	-0.9
4,485,874	-		GFF4494	0.13	+0.7
4,485,874	-		GFF4494	0.13	+0.2
4,485,876	+		GFF4494	0.13	+0.6
4,485,884	+		GFF4494	0.14	+0.2
4,485,923	+		GFF4494	0.15	+1.4
4,485,931	-		GFF4494	0.15	-0.1
4,485,942	+		GFF4494	0.16	-1.2
4,485,942	+		GFF4494	0.16	+1.4
4,485,942	+		GFF4494	0.16	-0.3
4,485,942	+		GFF4494	0.16	-1.2
4,485,942	+		GFF4494	0.16	+0.7
4,485,950	-		GFF4494	0.16	-1.9
4,485,950	-		GFF4494	0.16	-1.0
4,485,952	-		GFF4494	0.16	+0.1
4,485,975	+		GFF4494	0.17	+0.6
4,485,993	-		GFF4494	0.18	+1.3
4,485,995	-		GFF4494	0.18	+0.6
4,486,012	+		GFF4494	0.19	-0.0
4,486,019	+		GFF4494	0.19	-0.5
4,486,022	+		GFF4494	0.19	-2.3
4,486,022	+		GFF4494	0.19	-1.7
4,486,022	+		GFF4494	0.19	-0.9
4,486,022	+		GFF4494	0.19	+0.2
4,486,022	+		GFF4494	0.19	+0.1
4,486,024	+		GFF4494	0.19	-0.3
4,486,024	+		GFF4494	0.19	-0.2
4,486,024	+		GFF4494	0.19	+0.1
4,486,024	+		GFF4494	0.19	+0.5
4,486,029	+		GFF4494	0.20	+0.8
4,486,030	-		GFF4494	0.20	-1.7
4,486,030	-		GFF4494	0.20	-0.9
4,486,030	-		GFF4494	0.20	+1.5
4,486,030	-		GFF4494	0.20	-0.3
4,486,030	-		GFF4494	0.20	-0.2
4,486,030	-		GFF4494	0.20	-1.8
4,486,030	-		GFF4494	0.20	+0.3
4,486,034	+		GFF4494	0.20	-0.4
4,486,034	+		GFF4494	0.20	+0.4
4,486,037	-		GFF4494	0.20	-0.0
4,486,039	+		GFF4494	0.20	+1.2
4,486,039	+		GFF4494	0.20	+1.1
4,486,039	+		GFF4494	0.20	-1.3
4,486,039	+		GFF4494	0.20	+1.5
4,486,039	+		GFF4494	0.20	-0.1
4,486,039	+		GFF4494	0.20	+0.9
4,486,039	+		GFF4494	0.20	-2.7
4,486,039	+		GFF4494	0.20	+0.4
4,486,039	+		GFF4494	0.20	+0.2
4,486,039	+		GFF4494	0.20	-0.1
4,486,039	+		GFF4494	0.20	+1.7
4,486,042	-		GFF4494	0.20	+0.9
4,486,042	-		GFF4494	0.20	+0.3
4,486,042	-		GFF4494	0.20	+0.2
4,486,047	-		GFF4494	0.20	-0.5
4,486,047	-		GFF4494	0.20	+0.2
4,486,047	-		GFF4494	0.20	-2.8
4,486,047	-		GFF4494	0.20	+1.5
4,486,047	-		GFF4494	0.20	+0.1
4,486,047	-		GFF4494	0.20	-1.7
4,486,047	-		GFF4494	0.20	-2.1
4,486,047	-		GFF4494	0.20	-0.1
4,486,047	-		GFF4494	0.20	-0.8
4,486,058	+		GFF4494	0.21	+2.1
4,486,058	+		GFF4494	0.21	+0.9
4,486,058	-		GFF4494	0.21	-0.8
4,486,066	-		GFF4494	0.21	+0.3
4,486,067	+		GFF4494	0.21	-0.8
4,486,082	+		GFF4494	0.22	+0.8
4,486,087	+		GFF4494	0.22	+0.2
4,486,092	+		GFF4494	0.22	+1.2
4,486,092	+		GFF4494	0.22	-1.8
4,486,092	+		GFF4494	0.22	-0.8
4,486,092	+		GFF4494	0.22	+0.1
4,486,092	+		GFF4494	0.22	-0.7
4,486,092	+		GFF4494	0.22	+1.2
4,486,100	-		GFF4494	0.23	+0.5
4,486,100	-		GFF4494	0.23	-0.5
4,486,100	-		GFF4494	0.23	+0.9
4,486,100	-		GFF4494	0.23	+1.2
4,486,132	+		GFF4494	0.24	+1.1
4,486,172	+		GFF4494	0.26	+0.1
4,486,188	+		GFF4494	0.26	+0.6
4,486,188	+		GFF4494	0.26	-0.3
4,486,188	+		GFF4494	0.26	-0.4
4,486,193	+		GFF4494	0.27	-0.9
4,486,193	+		GFF4494	0.27	+0.5
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