Strain Fitness in Sphingobium sp. HT1-2 around GFF4491

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,481,612	+		GFF4489	0.89	-1.0
4,481,635	-				-0.4
4,481,646	-				-0.1
4,481,653	-				+0.5
4,481,657	-				+0.4
4,481,657	-				-1.9
4,481,659	+				-0.4
4,481,675	-				-0.5
4,481,687	+				-1.0
4,481,687	+				-1.1
4,481,695	-				-2.1
4,481,695	-				-1.0
4,481,751	+				-0.5
4,481,751	+				-0.7
4,481,751	+				-0.3
4,481,751	+				+0.6
4,481,751	+				+1.2
4,481,751	+				+0.2
4,481,751	+				+0.3
4,481,751	+				+0.4
4,481,751	+				+0.9
4,481,756	+		GFF4490	0.10	-0.7
4,481,759	-		GFF4490	0.11	+0.1
4,481,759	-		GFF4490	0.11	-0.0
4,481,759	-		GFF4490	0.11	+0.5
4,481,759	-		GFF4490	0.11	-0.4
4,481,759	-		GFF4490	0.11	-0.2
4,481,759	-		GFF4490	0.11	-0.8
4,481,759	-		GFF4490	0.11	+0.3
4,481,763	+		GFF4490	0.11	+1.0
4,481,764	-		GFF4490	0.11	+0.0
4,481,764	-		GFF4490	0.11	+0.2
4,481,764	-		GFF4490	0.11	+0.1
4,481,782	-		GFF4490	0.13	-0.4
4,481,815	-		GFF4490	0.17	+0.0
4,481,817	+		GFF4490	0.17	-0.9
4,481,817	+		GFF4490	0.17	-2.0
4,481,822	+		GFF4490	0.17	-1.0
4,481,825	-		GFF4490	0.18	+0.6
4,481,825	-		GFF4490	0.18	-0.1
4,481,825	-		GFF4490	0.18	-1.1
4,481,831	+		GFF4490	0.18	+1.8
4,481,841	+		GFF4490	0.19	+0.0
4,481,844	-		GFF4490	0.20	+0.7
4,481,849	-		GFF4490	0.20	+1.0
4,481,859	-		GFF4490	0.21	+0.1
4,481,860	+		GFF4490	0.21	-0.6
4,481,879	-		GFF4490	0.24	-0.1
4,481,939	-		GFF4490	0.30	+1.1
4,481,940	+		GFF4490	0.30	+0.7
4,481,945	+		GFF4490	0.31	-1.4
4,481,949	-		GFF4490	0.31	+1.0
4,481,949	-		GFF4490	0.31	-2.2
4,481,953	-		GFF4490	0.31	-0.3
4,481,957	-		GFF4490	0.32	-0.3
4,481,963	-		GFF4490	0.32	+0.0
4,481,972	-		GFF4490	0.33	-0.7
4,481,972	-		GFF4490	0.33	+1.0
4,482,011	+		GFF4490	0.38	+0.1
4,482,058	+		GFF4490	0.43	-1.7
4,482,058	+		GFF4490	0.43	+0.7
4,482,063	+		GFF4490	0.43	-1.7
4,482,066	-		GFF4490	0.43	-0.9
4,482,066	-		GFF4490	0.43	-0.5
4,482,066	-		GFF4490	0.43	-0.9
4,482,068	+		GFF4490	0.44	+0.5
4,482,068	+		GFF4490	0.44	-0.4
4,482,068	+		GFF4490	0.44	+0.1
4,482,073	+		GFF4490	0.44	+1.6
4,482,073	+		GFF4490	0.44	+0.5
4,482,073	+		GFF4490	0.44	+0.8
4,482,075	+		GFF4490	0.44	+0.0
4,482,076	-		GFF4490	0.45	-0.3
4,482,081	-		GFF4490	0.45	+1.4
4,482,081	-		GFF4490	0.45	+1.3
4,482,081	-		GFF4490	0.45	+0.5
4,482,081	-		GFF4490	0.45	+0.8
4,482,081	-		GFF4490	0.45	+1.7
4,482,081	-		GFF4490	0.45	-0.4
4,482,094	+		GFF4490	0.46	+0.5
4,482,102	-		GFF4490	0.47	+0.8
4,482,104	+		GFF4490	0.48	+0.2
4,482,107	+		GFF4490	0.48	+0.8
4,482,108	+		GFF4490	0.48	+1.2
4,482,112	-		GFF4490	0.48	-0.3
4,482,149	+		GFF4490	0.52	+1.4
4,482,158	-		GFF4490	0.53	+0.2
4,482,173	+		GFF4490	0.55	-0.9
4,482,173	+		GFF4490	0.55	+0.7
4,482,181	-		GFF4490	0.56	+1.3
4,482,244	+		GFF4490	0.62	+0.7
4,482,246	+		GFF4490	0.63	+1.3
4,482,254	-		GFF4490	0.64	-0.1
4,482,261	+		GFF4490	0.64	+0.8
4,482,269	-		GFF4490	0.65	+0.0
4,482,269	-		GFF4490	0.65	+0.8
4,482,275	+		GFF4490	0.66	-0.7
4,482,275	+		GFF4490	0.66	+0.3
4,482,275	+		GFF4490	0.66	-0.3
4,482,275	+		GFF4490	0.66	+0.1
4,482,275	+		GFF4490	0.66	+0.2
4,482,275	+		GFF4490	0.66	+0.1
4,482,283	-		GFF4490	0.67	+1.2
4,482,283	-		GFF4490	0.67	+0.3
4,482,284	+		GFF4490	0.67	-0.6
4,482,285	+		GFF4490	0.67	-0.1
4,482,285	+		GFF4490	0.67	+1.0
4,482,285	+		GFF4490	0.67	+0.3
4,482,311	+		GFF4490	0.70	-0.1
4,482,319	-		GFF4490	0.71	+0.4
4,482,319	-		GFF4490	0.71	+1.6
4,482,321	+		GFF4490	0.71	-0.8
4,482,321	+		GFF4490	0.71	-0.3
4,482,341	+		GFF4490	0.73	+0.5
4,482,358	+		GFF4490	0.75	+0.5
4,482,358	+		GFF4490	0.75	-0.5
4,482,365	+		GFF4490	0.75	+0.7
4,482,366	-		GFF4490	0.76	+0.1
4,482,366	-		GFF4490	0.76	+0.9
4,482,375	-		GFF4490	0.76	+1.3
4,482,377	+		GFF4490	0.77	-0.4
4,482,377	+		GFF4490	0.77	+0.6
4,482,377	+		GFF4490	0.77	-2.3
4,482,377	+		GFF4490	0.77	+0.5
4,482,377	+		GFF4490	0.77	-0.7
4,482,377	+		GFF4490	0.77	+0.8
4,482,377	+		GFF4490	0.77	-0.4
4,482,383	+		GFF4490	0.77	+0.7
4,482,385	-		GFF4490	0.78	-0.7
4,482,385	-		GFF4490	0.78	-0.6
4,482,385	-		GFF4490	0.78	+2.2
4,482,385	-		GFF4490	0.78	-1.7
4,482,385	-		GFF4490	0.78	-1.3
4,482,391	-		GFF4490	0.78	-0.4
4,482,391	-		GFF4490	0.78	-0.9
4,482,391	-		GFF4490	0.78	-0.8
4,482,433	+		GFF4490	0.83	-0.3
4,482,433	+		GFF4490	0.83	+0.2
4,482,468	+		GFF4490	0.86	-0.8
4,482,468	+		GFF4490	0.86	+0.3
4,482,468	+		GFF4490	0.86	+0.3
4,482,468	+		GFF4490	0.86	+0.1
4,482,477	-		GFF4490	0.87	-0.7
4,482,504	-				-0.2
4,482,527	+				+1.0
4,482,538	+				-0.4
4,482,557	+				+0.7
4,482,557	+				-0.3
4,482,557	+				-1.3
4,482,557	+				+0.1
4,482,557	+				-0.1
4,482,565	+				+0.1
4,482,565	-				+0.3
4,482,565	-				+0.2
4,482,565	-				-2.0
4,482,565	-				-0.5
4,482,565	-				+0.9
4,482,565	-				+0.0
4,482,570	+				-0.3
4,482,606	-				+0.8
4,482,632	-				-2.1
4,482,649	-				+0.8
4,482,666	+				+0.3
4,482,687	+				-2.0
4,482,687	+				+0.9
4,482,693	-				-1.4
4,482,695	-				-0.1
4,482,695	-				-1.5
4,482,695	-				-0.6
4,482,695	-				+0.8
4,482,695	-				+0.8
4,482,705	+				+1.3
4,482,713	-				-0.5
4,482,713	-				+0.1
4,482,715	-				+1.2
4,482,772	+		GFF4491	0.13	-0.3
4,482,772	+		GFF4491	0.13	+0.6
4,482,772	+		GFF4491	0.13	+1.2
4,482,780	-		GFF4491	0.14	-0.3
4,482,780	-		GFF4491	0.14	+1.0
4,482,796	-		GFF4491	0.15	-2.0
4,482,811	-		GFF4491	0.16	+0.7
4,482,816	+		GFF4491	0.16	-0.0
4,482,826	+		GFF4491	0.17	+1.1
4,482,826	+		GFF4491	0.17	-0.9
4,482,826	+		GFF4491	0.17	+1.1
4,482,826	+		GFF4491	0.17	+0.2
4,482,826	+		GFF4491	0.17	-1.9
4,482,826	+		GFF4491	0.17	+0.3
4,482,826	+		GFF4491	0.17	-1.7
4,482,829	-		GFF4491	0.17	-0.3
4,482,834	-		GFF4491	0.18	-2.0
4,482,834	-		GFF4491	0.18	+0.9
4,482,834	-		GFF4491	0.18	+0.5
4,482,834	-		GFF4491	0.18	-1.4
4,482,834	-		GFF4491	0.18	-1.8
4,482,834	-		GFF4491	0.18	-0.5
4,482,834	-		GFF4491	0.18	+0.4
4,482,834	-		GFF4491	0.18	-0.2
4,482,834	-		GFF4491	0.18	-0.3
4,482,834	-		GFF4491	0.18	+0.8
4,482,834	-		GFF4491	0.18	-0.4
4,482,834	-		GFF4491	0.18	+1.4
4,482,834	-		GFF4491	0.18	+0.8
4,482,910	-		GFF4491	0.24	-2.0
4,482,921	-		GFF4491	0.25	+0.7
4,482,936	-		GFF4491	0.26	+0.2
4,482,953	-		GFF4491	0.27	+0.5
4,482,954	-		GFF4491	0.27	+0.3
4,482,956	+		GFF4491	0.27	+1.2
4,482,978	+		GFF4491	0.29	+0.4
4,482,983	+		GFF4491	0.29	-0.3
4,482,983	+		GFF4491	0.29	-0.9
4,483,014	+		GFF4491	0.32	+0.6
4,483,022	-		GFF4491	0.32	+1.5
4,483,022	-		GFF4491	0.32	+0.2
4,483,028	+		GFF4491	0.33	-0.6
4,483,028	+		GFF4491	0.33	+0.9
4,483,028	+		GFF4491	0.33	+1.2
4,483,036	+		GFF4491	0.33	-0.4
4,483,047	+		GFF4491	0.34	+1.2
4,483,055	-		GFF4491	0.35	+0.8
4,483,055	-		GFF4491	0.35	-0.2
4,483,055	-		GFF4491	0.35	+1.0
4,483,056	+		GFF4491	0.35	+0.5
4,483,061	+		GFF4491	0.35	+2.0
4,483,061	+		GFF4491	0.35	-1.0
4,483,061	+		GFF4491	0.35	-0.0
4,483,064	-		GFF4491	0.36	+0.6
4,483,080	-		GFF4491	0.37	+0.4
4,483,082	+		GFF4491	0.37	-1.9
4,483,087	+		GFF4491	0.37	+0.2
4,483,087	+		GFF4491	0.37	+0.2
4,483,119	+		GFF4491	0.40	-0.2
4,483,119	+		GFF4491	0.40	-1.9
4,483,119	+		GFF4491	0.40	-0.9
4,483,119	+		GFF4491	0.40	-0.5
4,483,127	-		GFF4491	0.40	+1.1
4,483,140	+		GFF4491	0.41	-1.7
4,483,140	+		GFF4491	0.41	+1.2
4,483,150	+		GFF4491	0.42	-0.4
4,483,188	+		GFF4491	0.45	+0.1
4,483,196	-		GFF4491	0.46	-0.8
4,483,202	+		GFF4491	0.46	-1.5
4,483,203	-		GFF4491	0.46	+0.9
4,483,210	-		GFF4491	0.47	+0.2
4,483,210	-		GFF4491	0.47	+0.8
4,483,211	-		GFF4491	0.47	+0.2
4,483,226	-		GFF4491	0.48	+0.8
4,483,240	+		GFF4491	0.49	-0.6
4,483,273	-		GFF4491	0.52	+0.8
4,483,280	-		GFF4491	0.52	+0.5
4,483,297	-		GFF4491	0.54	-0.3
4,483,307	-		GFF4491	0.54	-1.9
4,483,316	-		GFF4491	0.55	-1.0
4,483,327	-		GFF4491	0.56	+1.0
4,483,330	-		GFF4491	0.56	+0.6
4,483,330	-		GFF4491	0.56	-1.0
4,483,330	-		GFF4491	0.56	-0.8
4,483,330	-		GFF4491	0.56	-0.3
4,483,330	-		GFF4491	0.56	-1.9
4,483,330	-		GFF4491	0.56	-1.7
4,483,337	-		GFF4491	0.57	+0.3
4,483,337	-		GFF4491	0.57	-0.5
4,483,380	-		GFF4491	0.60	+0.1
4,483,398	+		GFF4491	0.61	-2.1
4,483,413	+		GFF4491	0.62	+1.1
4,483,413	+		GFF4491	0.62	+0.4
4,483,413	+		GFF4491	0.62	+0.1
4,483,413	+		GFF4491	0.62	-0.1
4,483,413	+		GFF4491	0.62	-0.1
4,483,415	+		GFF4491	0.63	-0.3
4,483,421	-		GFF4491	0.63	-1.2
4,483,421	-		GFF4491	0.63	+0.6
4,483,421	-		GFF4491	0.63	+0.3
4,483,421	-		GFF4491	0.63	+0.8
4,483,423	-		GFF4491	0.63	+0.5
4,483,432	+		GFF4491	0.64	-0.3
4,483,446	+		GFF4491	0.65	+0.3
4,483,472	+		GFF4491	0.67	-0.5
4,483,473	-		GFF4491	0.67	-0.2
4,483,478	-		GFF4491	0.67	+0.2
4,483,478	-		GFF4491	0.67	-0.2
4,483,479	+		GFF4491	0.68	+0.8
4,483,479	+		GFF4491	0.68	+0.5
4,483,479	+		GFF4491	0.68	-1.9
4,483,485	-		GFF4491	0.68	-2.2
4,483,487	-		GFF4491	0.68	-0.1
4,483,487	-		GFF4491	0.68	+0.2
4,483,493	-		GFF4491	0.69	-0.4
4,483,504	+		GFF4491	0.69	-0.4
4,483,524	-		GFF4491	0.71	-0.5
4,483,533	-		GFF4491	0.72	-1.7
4,483,606	-		GFF4491	0.77	-0.3
4,483,642	-		GFF4491	0.80	+0.6
4,483,647	+		GFF4491	0.80	-0.1
4,483,647	-		GFF4491	0.80	+0.2
4,483,648	-		GFF4491	0.81	+0.5
4,483,648	-		GFF4491	0.81	+1.6
4,483,648	-		GFF4491	0.81	+0.1
4,483,655	+		GFF4491	0.81	-0.1
4,483,669	-		GFF4491	0.82	+0.5
4,483,694	-		GFF4491	0.84	-0.0
4,483,732	-		GFF4491	0.87	-2.1
4,483,758	+		GFF4491	0.89	+0.2
4,483,762	-		GFF4491	0.89	-0.4
4,483,806	+				-1.4
4,483,814	-				+0.8
4,483,819	-				+0.2
4,483,889	+				-1.3
4,483,889	+				-2.5
4,483,904	+				+0.1
4,483,914	+				+0.6
4,483,928	-				-0.5
4,483,928	-				-0.0
4,483,948	+				-2.1
4,483,988	+				-0.6
4,484,018	+		GFF4492	0.12	-1.4
4,484,018	+		GFF4492	0.12	+0.1
4,484,018	+		GFF4492	0.12	-0.9
4,484,018	+		GFF4492	0.12	-1.3
4,484,026	-		GFF4492	0.15	+0.6
4,484,026	-		GFF4492	0.15	-0.7
4,484,026	-		GFF4492	0.15	-0.4
4,484,034	+		GFF4492	0.18	-0.4
4,484,051	+		GFF4492	0.24	+0.1
4,484,051	+		GFF4492	0.24	-0.9
4,484,059	-		GFF4492	0.27	-0.4
4,484,067	-		GFF4492	0.30	+0.3
4,484,093	-		GFF4492	0.39	+0.5
4,484,106	+		GFF4492	0.44	-2.0
4,484,114	-		GFF4492	0.47	+0.3
4,484,114	-		GFF4492	0.47	+0.9
4,484,137	-		GFF4492	0.55	+0.2
4,484,141	+		GFF4492	0.57	-0.1
4,484,145	-		GFF4492	0.58	+0.3
4,484,189	-		GFF4492	0.74	+0.4
4,484,242	+				+0.7
4,484,250	+				+1.1
4,484,251	+				-0.4
4,484,259	-				+0.9
4,484,271	+				+0.5
4,484,287	+				+0.1
4,484,288	+				+1.8
4,484,288	+				+1.5
4,484,288	+				+1.0
4,484,309	-				+0.4
4,484,309	-				+0.1
4,484,309	-				-1.0
4,484,324	+				+0.0
4,484,347	+				-0.6
4,484,355	-				-0.3
4,484,355	-				+0.9
4,484,359	+				-2.3
4,484,370	-				-0.7
4,484,385	-				+0.1
4,484,397	-				-2.2
4,484,406	+				+0.8
4,484,412	-				-0.7
4,484,413	+				+0.1
4,484,436	-				+0.8
4,484,436	-				+1.7
4,484,447	-				-1.8
4,484,462	+				+1.1
4,484,463	+				-0.7
4,484,470	-				+0.5
4,484,470	-				-0.4
4,484,470	-				+0.9
4,484,471	-				-0.2
4,484,507	+				-0.7
4,484,507	+				+0.6
4,484,507	+				-0.7
4,484,515	-				+0.8
4,484,515	-				+0.2
4,484,516	+				-0.8
4,484,530	-				-0.1
4,484,530	-				+1.0
4,484,542	+				-0.9
4,484,557	+				+0.5
4,484,557	+				-2.1
4,484,557	+				-1.9
4,484,567	-				-0.0
4,484,572	+				-1.7
4,484,580	-				+1.2
4,484,610	+				-2.2
4,484,610	+				-0.4
4,484,611	-				-0.1
4,484,611	-				+0.9
4,484,611	-				+0.2
4,484,616	-				+1.3
4,484,616	-				+1.1
4,484,622	+				+0.3
4,484,622	+				-0.9
4,484,635	-				+0.3
4,484,639	-				-0.9
4,484,645	+				+0.6
4,484,653	-				-2.0
4,484,653	-				-2.1
4,484,653	-				+0.2
4,484,653	-				-0.7
4,484,653	-				-1.2
4,484,663	-		GFF4493	0.10	+0.7
4,484,663	-		GFF4493	0.10	-0.4
4,484,668	+		GFF4493	0.11	-1.4
4,484,676	-		GFF4493	0.12	+0.2
4,484,676	-		GFF4493	0.12	+0.8
4,484,676	-		GFF4493	0.12	+1.3
4,484,689	+		GFF4493	0.13	+0.2
4,484,691	-		GFF4493	0.13	+0.1
4,484,698	+		GFF4493	0.14	+0.3
4,484,706	-		GFF4493	0.15	+0.1
4,484,707	-		GFF4493	0.15	-0.6
4,484,724	+		GFF4493	0.17	-1.9
4,484,765	-		GFF4493	0.22	-0.2
4,484,770	+		GFF4493	0.22	-0.9
4,484,770	+		GFF4493	0.22	+0.5
4,484,778	-		GFF4493	0.23	+1.3
4,484,778	-		GFF4493	0.23	-0.1
4,484,778	-		GFF4493	0.23	+0.3
4,484,778	-		GFF4493	0.23	-0.0
4,484,778	-		GFF4493	0.23	+0.1
4,484,780	+		GFF4493	0.23	+0.3
4,484,820	+		GFF4493	0.28	-1.0
4,484,820	+		GFF4493	0.28	+0.1
4,484,820	+		GFF4493	0.28	-0.1
4,484,820	+		GFF4493	0.28	+0.8
4,484,825	+		GFF4493	0.28	+1.7
4,484,828	-		GFF4493	0.29	+0.1
4,484,828	-		GFF4493	0.29	+0.9
4,484,828	-		GFF4493	0.29	-0.5
4,484,828	-		GFF4493	0.29	-0.1
4,484,828	-		GFF4493	0.29	+1.4
4,484,828	-		GFF4493	0.29	+0.9
4,484,828	-		GFF4493	0.29	+1.2
4,484,828	-		GFF4493	0.29	-0.1
4,484,833	-		GFF4493	0.29	-0.3
4,484,839	+		GFF4493	0.30	+0.9
4,484,848	-		GFF4493	0.31	-1.4
4,484,864	-		GFF4493	0.33	+1.9
4,484,892	-		GFF4493	0.36	+1.5