Strain Fitness in Sphingobium sp. HT1-2 around GFF4476

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,468,967	+		GFF4475	0.68	-1.7
4,468,974	+		GFF4475	0.69	-0.5
4,468,984	+		GFF4475	0.69	+2.3
4,468,991	+		GFF4475	0.69	-1.8
4,468,992	-		GFF4475	0.69	-0.2
4,469,012	+		GFF4475	0.70	-0.7
4,469,023	-		GFF4475	0.70	+1.2
4,469,024	+		GFF4475	0.70	+1.2
4,469,024	+		GFF4475	0.70	+0.2
4,469,024	+		GFF4475	0.70	+0.0
4,469,026	+		GFF4475	0.70	+1.4
4,469,032	-		GFF4475	0.70	-0.5
4,469,032	-		GFF4475	0.70	+0.7
4,469,032	-		GFF4475	0.70	-0.4
4,469,034	+		GFF4475	0.70	-1.1
4,469,034	-		GFF4475	0.70	-1.5
4,469,042	-		GFF4475	0.71	+0.4
4,469,042	-		GFF4475	0.71	+0.7
4,469,044	+		GFF4475	0.71	+0.6
4,469,052	-		GFF4475	0.71	-1.2
4,469,068	-		GFF4475	0.72	+1.3
4,469,081	+		GFF4475	0.72	+0.2
4,469,091	+		GFF4475	0.72	+0.3
4,469,092	+		GFF4475	0.72	+0.9
4,469,111	+		GFF4475	0.73	-0.9
4,469,123	-		GFF4475	0.73	+0.4
4,469,131	-		GFF4475	0.74	+1.3
4,469,146	-		GFF4475	0.74	-1.2
4,469,172	+		GFF4475	0.75	-0.1
4,469,172	+		GFF4475	0.75	+0.7
4,469,191	+		GFF4475	0.75	-1.1
4,469,193	+		GFF4475	0.76	+1.6
4,469,199	-		GFF4475	0.76	-0.4
4,469,199	-		GFF4475	0.76	+0.2
4,469,215	+		GFF4475	0.76	-0.1
4,469,215	+		GFF4475	0.76	+1.6
4,469,247	+		GFF4475	0.77	-0.0
4,469,247	+		GFF4475	0.77	-0.5
4,469,255	-		GFF4475	0.77	+0.5
4,469,279	-		GFF4475	0.78	-0.6
4,469,291	+		GFF4475	0.79	-1.1
4,469,293	+		GFF4475	0.79	-0.3
4,469,293	+		GFF4475	0.79	-0.8
4,469,293	+		GFF4475	0.79	+1.3
4,469,293	+		GFF4475	0.79	-2.4
4,469,293	+		GFF4475	0.79	+0.6
4,469,293	+		GFF4475	0.79	+1.4
4,469,293	+		GFF4475	0.79	-0.3
4,469,293	+		GFF4475	0.79	+0.6
4,469,293	+		GFF4475	0.79	-1.6
4,469,293	+		GFF4475	0.79	-0.7
4,469,293	+		GFF4475	0.79	+2.1
4,469,293	+		GFF4475	0.79	+0.9
4,469,293	+		GFF4475	0.79	-0.7
4,469,293	+		GFF4475	0.79	-0.0
4,469,293	+		GFF4475	0.79	+0.4
4,469,296	-		GFF4475	0.79	-0.1
4,469,301	-		GFF4475	0.79	+1.4
4,469,301	-		GFF4475	0.79	+1.8
4,469,301	-		GFF4475	0.79	-0.3
4,469,301	-		GFF4475	0.79	-1.8
4,469,301	-		GFF4475	0.79	-1.2
4,469,303	-		GFF4475	0.79	+0.4
4,469,349	+		GFF4475	0.80	-0.9
4,469,374	+		GFF4475	0.81	+0.2
4,469,396	+		GFF4475	0.82	+0.8
4,469,405	+		GFF4475	0.82	-1.0
4,469,405	+		GFF4475	0.82	-0.3
4,469,413	-		GFF4475	0.83	+1.4
4,469,441	-		GFF4475	0.83	-0.8
4,469,469	+		GFF4475	0.84	+0.2
4,469,474	+		GFF4475	0.84	-0.4
4,469,479	+		GFF4475	0.85	+0.5
4,469,479	+		GFF4475	0.85	-1.5
4,469,479	+		GFF4475	0.85	+1.2
4,469,479	+		GFF4475	0.85	-0.5
4,469,479	+		GFF4475	0.85	-0.0
4,469,479	+		GFF4475	0.85	-1.1
4,469,479	+		GFF4475	0.85	-0.4
4,469,479	+		GFF4475	0.85	+1.2
4,469,479	+		GFF4475	0.85	+0.1
4,469,479	+		GFF4475	0.85	+0.8
4,469,479	+		GFF4475	0.85	+0.7
4,469,481	+		GFF4475	0.85	-0.1
4,469,481	+		GFF4475	0.85	+0.7
4,469,482	-		GFF4475	0.85	+0.0
4,469,487	-		GFF4475	0.85	+0.3
4,469,487	-		GFF4475	0.85	+0.3
4,469,489	-		GFF4475	0.85	-1.9
4,469,497	-		GFF4475	0.85	-0.7
4,469,497	-		GFF4475	0.85	+0.1
4,469,517	-		GFF4475	0.86	+0.4
4,469,554	-		GFF4475	0.87	+1.0
4,469,558	-		GFF4475	0.87	-0.6
4,469,565	+		GFF4475	0.87	-0.0
4,469,565	+		GFF4475	0.87	+0.3
4,469,579	-		GFF4475	0.88	-1.1
4,469,593	+		GFF4475	0.88	+0.6
4,469,605	+		GFF4475	0.89	+0.4
4,469,605	+		GFF4475	0.89	-2.6
4,469,613	-		GFF4475	0.89	+0.3
4,469,613	-		GFF4475	0.89	-0.1
4,469,613	-		GFF4475	0.89	-1.2
4,469,613	-		GFF4475	0.89	-0.6
4,469,613	-		GFF4475	0.89	-0.6
4,469,614	-		GFF4475	0.89	+0.3
4,469,616	+		GFF4475	0.89	+0.5
4,469,616	+		GFF4475	0.89	+0.2
4,469,650	+				+0.3
4,469,650	+				-0.1
4,469,655	+				+0.6
4,469,663	-				+0.8
4,469,690	-				-0.9
4,469,729	-				-0.7
4,469,742	+				-0.5
4,469,745	+				-0.3
4,469,747	+				-2.4
4,469,750	-				+1.4
4,469,780	-				-0.4
4,469,802	+				-0.5
4,469,802	+				+0.2
4,469,804	-				+0.5
4,469,809	-				+0.6
4,469,810	+				-0.6
4,469,818	-				-1.1
4,469,873	+				+0.6
4,469,888	-				-2.2
4,469,888	-				+0.6
4,469,893	-				+0.4
4,469,934	-				+1.2
4,469,964	+				+1.2
4,469,965	+				-0.3
4,469,965	+				+0.4
4,469,990	+				-1.5
4,469,990	+				-0.9
4,469,998	-				-1.6
4,470,000	+				-0.6
4,470,007	+				+0.1
4,470,022	+				+1.9
4,470,024	-				+0.7
4,470,041	+				-1.6
4,470,041	+				-0.2
4,470,041	+				-0.3
4,470,041	+				+1.1
4,470,041	+				-0.0
4,470,041	+				+1.8
4,470,041	+				+0.1
4,470,041	+				-0.1
4,470,041	+				-1.2
4,470,041	+				+0.7
4,470,041	+				+1.6
4,470,041	+				+1.8
4,470,041	+				-1.6
4,470,041	+				+0.1
4,470,041	+				-1.1
4,470,049	-				+0.9
4,470,049	-				+0.0
4,470,049	-				-2.1
4,470,049	-				-0.6
4,470,049	-				+0.7
4,470,049	-				+0.4
4,470,049	-				+0.0
4,470,049	-				+0.2
4,470,049	-				-0.5
4,470,049	-				-0.0
4,470,049	-				+2.2
4,470,049	-				+0.7
4,470,066	-				+0.2
4,470,066	-				-0.4
4,470,074	+				-1.7
4,470,074	+				-1.7
4,470,108	+		GFF4476	0.10	+0.7
4,470,116	-		GFF4476	0.11	+0.2
4,470,116	-		GFF4476	0.11	-2.1
4,470,117	+		GFF4476	0.11	+1.0
4,470,118	+		GFF4476	0.11	+0.8
4,470,125	+		GFF4476	0.11	+0.9
4,470,129	+		GFF4476	0.11	+0.4
4,470,133	-		GFF4476	0.12	+0.1
4,470,137	+		GFF4476	0.12	+0.3
4,470,145	+		GFF4476	0.13	-0.5
4,470,172	+		GFF4476	0.14	+1.2
4,470,172	+		GFF4476	0.14	+1.0
4,470,172	+		GFF4476	0.14	+0.4
4,470,172	+		GFF4476	0.14	-1.5
4,470,172	+		GFF4476	0.14	-0.5
4,470,174	+		GFF4476	0.14	-0.1
4,470,174	+		GFF4476	0.14	+0.3
4,470,174	+		GFF4476	0.14	+1.5
4,470,174	+		GFF4476	0.14	-2.5
4,470,174	+		GFF4476	0.14	+1.0
4,470,174	+		GFF4476	0.14	+0.4
4,470,174	+		GFF4476	0.14	+1.0
4,470,174	+		GFF4476	0.14	-0.4
4,470,174	+		GFF4476	0.14	-1.1
4,470,174	+		GFF4476	0.14	+0.4
4,470,174	+		GFF4476	0.14	+0.7
4,470,174	+		GFF4476	0.14	+0.0
4,470,174	+		GFF4476	0.14	-0.2
4,470,174	+		GFF4476	0.14	-0.4
4,470,174	+		GFF4476	0.14	+0.8
4,470,174	+		GFF4476	0.14	+0.9
4,470,174	+		GFF4476	0.14	+0.2
4,470,174	+		GFF4476	0.14	+0.4
4,470,174	+		GFF4476	0.14	+0.9
4,470,174	+		GFF4476	0.14	+0.3
4,470,174	+		GFF4476	0.14	-1.1
4,470,174	+		GFF4476	0.14	+0.4
4,470,174	+		GFF4476	0.14	+2.3
4,470,174	+		GFF4476	0.14	-0.2
4,470,174	+		GFF4476	0.14	-0.1
4,470,174	+		GFF4476	0.14	-0.7
4,470,174	+		GFF4476	0.14	-0.0
4,470,174	+		GFF4476	0.14	-2.0
4,470,174	+		GFF4476	0.14	-0.8
4,470,174	+		GFF4476	0.14	+0.8
4,470,174	+		GFF4476	0.14	-0.5
4,470,174	+		GFF4476	0.14	+0.6
4,470,174	+		GFF4476	0.14	+0.8
4,470,174	+		GFF4476	0.14	+0.3
4,470,180	-		GFF4476	0.15	+0.1
4,470,180	-		GFF4476	0.15	+0.6
4,470,180	-		GFF4476	0.15	+0.8
4,470,180	-		GFF4476	0.15	+0.2
4,470,182	-		GFF4476	0.15	+1.0
4,470,182	-		GFF4476	0.15	-0.0
4,470,182	-		GFF4476	0.15	-0.8
4,470,182	-		GFF4476	0.15	+1.1
4,470,182	-		GFF4476	0.15	+0.6
4,470,182	-		GFF4476	0.15	-0.8
4,470,182	-		GFF4476	0.15	+0.3
4,470,182	-		GFF4476	0.15	+0.6
4,470,192	-		GFF4476	0.16	+1.6
4,470,206	-		GFF4476	0.17	-1.8
4,470,229	-		GFF4476	0.18	-1.0
4,470,229	-		GFF4476	0.18	-0.3
4,470,229	-		GFF4476	0.18	-0.2
4,470,260	-		GFF4476	0.20	+0.9
4,470,282	-		GFF4476	0.22	-0.3
4,470,300	+		GFF4476	0.23	-0.2
4,470,312	+		GFF4476	0.24	-0.1
4,470,320	-		GFF4476	0.24	+1.7
4,470,320	-		GFF4476	0.24	+0.0
4,470,320	-		GFF4476	0.24	-0.2
4,470,320	-		GFF4476	0.24	+0.0
4,470,339	+		GFF4476	0.26	+0.6
4,470,354	-		GFF4476	0.27	+0.0
4,470,366	-		GFF4476	0.27	-1.0
4,470,366	-		GFF4476	0.27	-0.4
4,470,371	-		GFF4476	0.28	-0.1
4,470,381	-		GFF4476	0.28	-0.2
4,470,404	+		GFF4476	0.30	+1.4
4,470,408	-		GFF4476	0.30	+0.3
4,470,408	-		GFF4476	0.30	+2.0
4,470,408	-		GFF4476	0.30	+0.6
4,470,408	-		GFF4476	0.30	-1.4
4,470,408	-		GFF4476	0.30	-0.2
4,470,419	+		GFF4476	0.31	-1.1
4,470,422	-		GFF4476	0.31	+0.8
4,470,429	+		GFF4476	0.32	-1.4
4,470,429	+		GFF4476	0.32	-0.4
4,470,429	+		GFF4476	0.32	+0.1
4,470,432	-		GFF4476	0.32	+1.0
4,470,436	+		GFF4476	0.32	+0.6
4,470,437	-		GFF4476	0.32	-0.2
4,470,437	-		GFF4476	0.32	-1.4
4,470,437	-		GFF4476	0.32	+0.4
4,470,437	-		GFF4476	0.32	-1.1
4,470,437	-		GFF4476	0.32	-1.9
4,470,437	-		GFF4476	0.32	-0.6
4,470,450	-		GFF4476	0.33	-1.4
4,470,472	-		GFF4476	0.34	+0.5
4,470,474	+		GFF4476	0.35	+1.2
4,470,487	+		GFF4476	0.35	-1.4
4,470,487	+		GFF4476	0.35	+1.1
4,470,487	+		GFF4476	0.35	-0.4
4,470,528	-		GFF4476	0.38	+1.3
4,470,533	-		GFF4476	0.38	-0.1
4,470,546	+		GFF4476	0.39	+0.9
4,470,548	+		GFF4476	0.39	+0.2
4,470,548	+		GFF4476	0.39	+1.1
4,470,548	+		GFF4476	0.39	-0.4
4,470,550	-		GFF4476	0.40	-1.2
4,470,556	+		GFF4476	0.40	+0.4
4,470,556	-		GFF4476	0.40	+0.1
4,470,568	+		GFF4476	0.41	-0.5
4,470,568	+		GFF4476	0.41	+0.5
4,470,568	+		GFF4476	0.41	+0.6
4,470,576	-		GFF4476	0.41	-0.1
4,470,618	+		GFF4476	0.44	+0.2
4,470,620	-		GFF4476	0.44	+0.3
4,470,647	-		GFF4476	0.46	+0.1
4,470,649	+		GFF4476	0.46	+0.4
4,470,651	+		GFF4476	0.46	+0.1
4,470,657	-		GFF4476	0.47	+0.4
4,470,657	-		GFF4476	0.47	-1.8
4,470,659	-		GFF4476	0.47	-0.2
4,470,659	-		GFF4476	0.47	-0.3
4,470,716	-		GFF4476	0.51	+0.4
4,470,727	-		GFF4476	0.51	-0.3
4,470,734	-		GFF4476	0.52	+0.6
4,470,734	-		GFF4476	0.52	-0.2
4,470,769	+		GFF4476	0.54	+0.7
4,470,769	-		GFF4476	0.54	-1.4
4,470,791	-		GFF4476	0.56	-1.5
4,470,818	+		GFF4476	0.58	+0.3
4,470,818	-		GFF4476	0.58	+0.6
4,470,826	-		GFF4476	0.58	+0.7
4,470,828	+		GFF4476	0.58	-0.9
4,470,859	+		GFF4476	0.60	+1.1
4,470,869	+		GFF4476	0.61	+0.3
4,470,881	+		GFF4476	0.62	+0.6
4,470,889	+		GFF4476	0.62	-2.3
4,470,889	+		GFF4476	0.62	-2.1
4,470,889	+		GFF4476	0.62	+0.8
4,470,889	+		GFF4476	0.62	+1.6
4,470,889	+		GFF4476	0.62	+1.0
4,470,889	+		GFF4476	0.62	+0.2
4,470,889	+		GFF4476	0.62	+0.8
4,470,889	+		GFF4476	0.62	-0.4
4,470,889	+		GFF4476	0.62	+0.0
4,470,897	-		GFF4476	0.63	+0.3
4,470,897	-		GFF4476	0.63	-1.0
4,470,897	-		GFF4476	0.63	-1.9
4,470,897	-		GFF4476	0.63	+0.3
4,470,897	-		GFF4476	0.63	-1.2
4,470,897	-		GFF4476	0.63	+0.4
4,470,897	-		GFF4476	0.63	-0.0
4,470,902	-		GFF4476	0.63	+1.6
4,470,949	+		GFF4476	0.66	+1.4
4,470,988	+		GFF4476	0.69	+1.9
4,470,991	-		GFF4476	0.69	-0.8
4,470,996	-		GFF4476	0.69	-1.2
4,470,996	-		GFF4476	0.69	+0.9
4,470,996	-		GFF4476	0.69	+1.4
4,471,014	+		GFF4476	0.71	-0.4
4,471,014	+		GFF4476	0.71	-0.1
4,471,014	+		GFF4476	0.71	+1.9
4,471,022	-		GFF4476	0.71	+0.0
4,471,036	-		GFF4476	0.72	+1.2
4,471,047	+		GFF4476	0.73	+1.1
4,471,055	-		GFF4476	0.73	+0.4
4,471,055	-		GFF4476	0.73	+0.2
4,471,073	+		GFF4476	0.75	+1.4
4,471,073	+		GFF4476	0.75	-1.1
4,471,073	+		GFF4476	0.75	-1.7
4,471,073	+		GFF4476	0.75	+1.0
4,471,073	+		GFF4476	0.75	-0.4
4,471,073	+		GFF4476	0.75	-0.1
4,471,073	+		GFF4476	0.75	-1.3
4,471,073	+		GFF4476	0.75	-0.5
4,471,081	-		GFF4476	0.75	-0.2
4,471,081	-		GFF4476	0.75	+0.1
4,471,081	-		GFF4476	0.75	+0.2
4,471,081	-		GFF4476	0.75	-1.4
4,471,081	-		GFF4476	0.75	+1.0
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4,471,261	-		GFF4476	0.87	-0.9
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4,471,341	+				+1.4
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4,471,366	-				+0.5
4,471,385	-				+1.3
4,471,468	+				+0.7
4,471,476	-				-0.1
4,471,480	+				+0.9
4,471,480	+				-1.6
4,471,480	+				+1.2
4,471,488	-				+1.3
4,471,488	-				-1.0
4,471,505	+				+0.5
4,471,507	+				+1.1
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4,471,513	+				-1.6
4,471,515	-				+0.3
4,471,522	-				-0.1
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4,471,523	+				-0.8
4,471,523	+				+2.5
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4,471,528	+				+0.4
4,471,531	-				+0.7
4,471,531	-				-2.1
4,471,531	-				-1.4
4,471,531	-				-0.2
4,471,546	-				-1.9
4,471,551	-				+0.7
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4,471,611	+		GFF4477	0.13	-1.1
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4,472,071	-		GFF4477	0.51	-2.6
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