Strain Fitness in Sphingobium sp. HT1-2 around GFF4471

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,462,972	-		GFF4468	0.81	+0.8
4,462,972	-		GFF4468	0.81	+0.5
4,462,975	+		GFF4468	0.82	-1.4
4,462,983	-		GFF4468	0.82	-0.1
4,462,985	+		GFF4468	0.82	+0.5
4,462,985	+		GFF4468	0.82	-1.6
4,462,985	+		GFF4468	0.82	-0.2
4,462,985	+		GFF4468	0.82	-0.3
4,462,993	-		GFF4468	0.83	+0.3
4,462,997	+		GFF4468	0.83	+0.2
4,463,001	-		GFF4468	0.83	+0.5
4,463,001	-		GFF4468	0.83	+0.7
4,463,002	+		GFF4468	0.83	-0.7
4,463,030	-		GFF4468	0.85	-0.7
4,463,058	-		GFF4468	0.86	-1.0
4,463,106	+		GFF4468	0.88	-0.4
4,463,159	+				-0.3
4,463,174	-				-0.5
4,463,183	-				+0.5
4,463,188	-				-0.1
4,463,193	-				+1.4
4,463,203	+				+0.3
4,463,223	-				-2.4
4,463,236	-				+0.8
4,463,242	-				+0.3
4,463,258	+				-1.4
4,463,268	+				-0.3
4,463,276	-				+0.7
4,463,276	-				-0.2
4,463,276	-				-0.6
4,463,287	+				-0.1
4,463,295	-				+1.6
4,463,295	-				+0.3
4,463,301	+				+0.4
4,463,301	+				-0.2
4,463,306	+				+0.7
4,463,350	+				+0.7
4,463,379	-				+0.8
4,463,392	-		GFF4469	0.13	+0.8
4,463,470	+		GFF4469	0.38	+0.0
4,463,473	-		GFF4469	0.39	-0.0
4,463,478	-		GFF4469	0.40	+1.2
4,463,494	+		GFF4469	0.45	+0.4
4,463,496	+		GFF4469	0.46	-2.2
4,463,496	+		GFF4469	0.46	-1.1
4,463,542	-		GFF4469	0.60	+0.1
4,463,556	-		GFF4469	0.64	+0.0
4,463,573	-		GFF4469	0.70	-0.4
4,463,574	+		GFF4469	0.70	-0.2
4,463,579	+		GFF4469	0.72	+0.0
4,463,661	+				-1.8
4,463,725	-				+0.1
4,463,735	-				-1.6
4,463,742	+				+0.6
4,463,750	-				-0.1
4,463,764	-		GFF4470	0.15	+1.1
4,463,797	-		GFF4470	0.30	-1.1
4,463,805	-		GFF4470	0.34	+0.6
4,463,841	-		GFF4470	0.50	+0.5
4,463,860	+		GFF4470	0.59	+1.2
4,463,868	-		GFF4470	0.62	+0.4
4,463,868	-		GFF4470	0.62	+0.1
4,463,868	-		GFF4470	0.62	+0.9
4,463,868	-		GFF4470	0.62	+0.9
4,463,868	-		GFF4470	0.62	-0.3
4,463,868	-		GFF4470	0.62	-0.9
4,463,868	-		GFF4470	0.62	-0.6
4,463,877	+		GFF4470	0.66	-0.6
4,463,878	-		GFF4470	0.67	+0.2
4,463,882	+		GFF4470	0.68	+0.1
4,463,896	-		GFF4470	0.75	+1.0
4,463,898	-		GFF4470	0.76	+0.2
4,463,902	+		GFF4470	0.77	+1.1
4,463,917	+		GFF4470	0.84	+0.6
4,463,925	-		GFF4470	0.88	-0.1
4,463,968	+				+1.9
4,463,983	-				+0.2
4,463,984	+				-0.4
4,463,992	-				+0.6
4,464,001	-		GFF4471	0.11	-0.8
4,464,014	+		GFF4471	0.14	+0.2
4,464,044	+		GFF4471	0.20	+0.1
4,464,073	-		GFF4471	0.26	-0.3
4,464,090	-		GFF4471	0.30	-0.2
4,464,156	+		GFF4471	0.43	+0.2
4,464,164	-		GFF4471	0.45	+0.8
4,464,166	+		GFF4471	0.45	-2.0
4,464,173	+		GFF4471	0.47	+0.2
4,464,183	+		GFF4471	0.49	+0.4
4,464,183	+		GFF4471	0.49	+0.9
4,464,183	+		GFF4471	0.49	-0.1
4,464,183	+		GFF4471	0.49	-1.8
4,464,185	-		GFF4471	0.49	+0.7
4,464,191	-		GFF4471	0.51	+0.4
4,464,191	-		GFF4471	0.51	-0.8
4,464,243	-		GFF4471	0.61	+0.1
4,464,246	+		GFF4471	0.62	-0.7
4,464,262	-		GFF4471	0.65	+0.9
4,464,262	-		GFF4471	0.65	+0.5
4,464,281	-		GFF4471	0.69	+0.2
4,464,281	-		GFF4471	0.69	-0.5
4,464,316	+		GFF4471	0.77	+0.0
4,464,324	-		GFF4471	0.78	-0.1
4,464,333	+		GFF4471	0.80	+1.2
4,464,348	+		GFF4471	0.83	+0.8
4,464,349	-		GFF4471	0.84	+0.6
4,464,363	-		GFF4471	0.86	+0.1
4,464,380	+				-0.6
4,464,388	-				+0.5
4,464,388	-				+0.4
4,464,388	-				-0.3
4,464,452	+				+0.4
4,464,464	+				+1.6
4,464,465	-				+1.2
4,464,465	-				-0.6
4,464,524	-				-0.2
4,464,524	-				-1.9
4,464,530	+				+0.2
4,464,538	-				+0.1
4,464,603	+		GFF4472	0.10	-0.5
4,464,603	+		GFF4472	0.10	-0.6
4,464,666	+		GFF4472	0.28	-1.4
4,464,675	+		GFF4472	0.30	+0.4
4,464,676	-		GFF4472	0.31	-0.4
4,464,702	+		GFF4472	0.38	-1.8
4,464,702	+		GFF4472	0.38	-1.6
4,464,702	+		GFF4472	0.38	-1.0
4,464,702	+		GFF4472	0.38	+0.7
4,464,710	-		GFF4472	0.40	+1.0
4,464,710	-		GFF4472	0.40	-0.7
4,464,710	-		GFF4472	0.40	+0.3
4,464,717	+		GFF4472	0.42	+0.9
4,464,737	+		GFF4472	0.47	-0.9
4,464,738	+		GFF4472	0.48	+0.6
4,464,773	-		GFF4472	0.57	+1.6
4,464,773	-		GFF4472	0.57	-1.7
4,464,787	+		GFF4472	0.61	-1.4
4,464,795	-		GFF4472	0.64	+0.8
4,464,809	+		GFF4472	0.68	+0.3
4,464,831	+		GFF4472	0.74	-1.2
4,464,831	+		GFF4472	0.74	-1.5
4,464,831	+		GFF4472	0.74	+0.1
4,464,831	+		GFF4472	0.74	+0.6
4,464,839	-		GFF4472	0.76	+0.2
4,464,839	-		GFF4472	0.76	+1.3
4,464,839	-		GFF4472	0.76	+0.6
4,464,839	-		GFF4472	0.76	-1.4
4,464,841	+		GFF4472	0.76	-2.1
4,464,841	+		GFF4472	0.76	-0.4
4,464,849	-		GFF4472	0.79	+1.2
4,464,857	+		GFF4472	0.81	+1.2
4,464,903	+				-0.2
4,464,931	+				-1.6
4,464,943	+				-0.3
4,464,945	+				+0.7
4,464,945	+				+0.9
4,464,951	-				+0.0
4,464,999	+				+2.2
4,464,999	+				-0.7
4,464,999	+				+0.1
4,464,999	+				+0.2
4,465,007	-				+0.9
4,465,008	-				+1.1
4,465,013	+				+0.4
4,465,071	+				-1.3
4,465,083	+				-0.4
4,465,096	+				+0.4
4,465,130	+				+0.6
4,465,130	+				+0.2
4,465,138	-				-0.2
4,465,149	+				-0.1
4,465,157	-				-0.8
4,465,157	-				+0.4
4,465,164	+				+0.9
4,465,177	-				+0.7
4,465,183	+				+1.2
4,465,216	-				-1.8
4,465,237	+				-0.2
4,465,260	-				-0.7
4,465,270	+				+0.6
4,465,307	+				-0.3
4,465,310	-				-2.3
4,465,310	-				-0.9
4,465,326	+				-1.5
4,465,337	+				+0.9
4,465,339	+				+0.1
4,465,345	-				-2.1
4,465,345	-				-1.5
4,465,352	-				-0.3
4,465,361	+				-1.4
4,465,367	+				-0.1
4,465,369	-				-1.0
4,465,371	+				+0.7
4,465,372	+				+0.9
4,465,372	+				+0.7
4,465,372	+				+0.9
4,465,372	+				-1.0
4,465,375	-				+0.3
4,465,379	+				+0.0
4,465,380	-				-1.6
4,465,392	+				+1.1
4,465,392	+				+0.0
4,465,392	+				+0.2
4,465,392	+				+1.5
4,465,392	+				-0.7
4,465,392	+				+0.8
4,465,392	+				-0.4
4,465,392	+				+2.0
4,465,392	+				-2.2
4,465,392	+				-1.7
4,465,392	+				-0.6
4,465,392	+				-2.0
4,465,392	+				+1.2
4,465,392	+				+1.6
4,465,392	+				+0.5
4,465,392	+				+0.2
4,465,392	+				+1.1
4,465,392	+				+0.3
4,465,400	-				-0.2
4,465,400	-				-0.5
4,465,400	-				-0.3
4,465,400	-				-2.4
4,465,400	-				-0.4
4,465,400	-				-0.2
4,465,400	-				-1.8
4,465,400	-				+1.3
4,465,400	-				+0.9
4,465,400	-				+0.1
4,465,400	-				+0.8
4,465,400	-				+0.7
4,465,400	-				+0.8
4,465,400	-				-0.8
4,465,400	-				-0.4
4,465,400	-				+0.4
4,465,400	-				+1.5
4,465,400	-				+0.9
4,465,400	-				+0.3
4,465,400	-				-0.6
4,465,400	-				+0.7
4,465,412	-				-1.9
4,465,420	+				+0.2