Strain Fitness in Sphingobium sp. HT1-2 around GFF4467

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,459,694	-		GFF4465	0.35	-0.8
4,459,696	+		GFF4465	0.36	-1.2
4,459,701	+		GFF4465	0.37	-0.3
4,459,805	-		GFF4465	0.60	-2.0
4,459,807	+		GFF4465	0.61	+2.0
4,459,815	-		GFF4465	0.62	-0.4
4,459,836	+		GFF4465	0.67	-0.8
4,459,857	-		GFF4465	0.72	+1.2
4,459,887	+		GFF4465	0.79	-0.5
4,459,892	+		GFF4465	0.80	-2.2
4,459,896	+		GFF4465	0.81	+0.6
4,459,918	+		GFF4465	0.86	-0.7
4,459,918	+		GFF4465	0.86	-1.7
4,459,918	+		GFF4465	0.86	+0.5
4,459,918	+		GFF4465	0.86	-0.1
4,459,918	+		GFF4465	0.86	+0.6
4,459,918	+		GFF4465	0.86	-0.9
4,459,918	+		GFF4465	0.86	+0.5
4,459,926	-		GFF4465	0.87	-0.1
4,459,926	-		GFF4465	0.87	-1.4
4,459,926	-		GFF4465	0.87	+1.2
4,459,959	-				+0.0
4,459,974	-				+0.2
4,459,976	+				+0.2
4,459,976	+				+0.3
4,459,984	-				-0.1
4,460,010	+				+0.2
4,460,028	-				+1.4
4,460,034	+				-1.4
4,460,034	+				-0.7
4,460,036	-				+0.2
4,460,042	-		GFF4466	0.10	-0.7
4,460,051	+		GFF4466	0.11	+1.4
4,460,051	+		GFF4466	0.11	-1.1
4,460,059	-		GFF4466	0.13	-0.2
4,460,078	-		GFF4466	0.15	-2.1
4,460,078	-		GFF4466	0.15	-1.2
4,460,080	+		GFF4466	0.15	-0.6
4,460,100	+		GFF4466	0.18	+0.2
4,460,100	-		GFF4466	0.18	-0.2
4,460,107	+		GFF4466	0.19	+1.0
4,460,114	-		GFF4466	0.20	-1.7
4,460,116	+		GFF4466	0.20	-0.8
4,460,135	+		GFF4466	0.23	+0.4
4,460,143	-		GFF4466	0.24	+1.0
4,460,186	-		GFF4466	0.30	-0.4
4,460,209	+		GFF4466	0.33	+0.5
4,460,209	+		GFF4466	0.33	+0.0
4,460,209	+		GFF4466	0.33	+0.9
4,460,214	+		GFF4466	0.34	-0.5
4,460,217	-		GFF4466	0.34	+0.4
4,460,217	-		GFF4466	0.34	-1.3
4,460,217	-		GFF4466	0.34	+1.7
4,460,217	-		GFF4466	0.34	+1.1
4,460,217	-		GFF4466	0.34	-0.4
4,460,220	+		GFF4466	0.35	-0.7
4,460,222	-		GFF4466	0.35	+0.2
4,460,225	+		GFF4466	0.36	-0.6
4,460,276	+		GFF4466	0.43	-0.2
4,460,284	+		GFF4466	0.44	+1.9
4,460,290	-		GFF4466	0.45	+0.2
4,460,290	-		GFF4466	0.45	+1.6
4,460,337	+		GFF4466	0.51	+0.4
4,460,354	-		GFF4466	0.53	+0.3
4,460,370	+		GFF4466	0.56	+0.4
4,460,377	+		GFF4466	0.57	+0.6
4,460,393	+		GFF4466	0.59	+0.9
4,460,398	+		GFF4466	0.59	-2.4
4,460,398	+		GFF4466	0.59	+0.8
4,460,406	-		GFF4466	0.61	+0.9
4,460,408	-		GFF4466	0.61	+0.2
4,460,424	+		GFF4466	0.63	-2.7
4,460,424	+		GFF4466	0.63	+0.8
4,460,445	+		GFF4466	0.66	+0.8
4,460,451	+		GFF4466	0.67	-0.4
4,460,469	+		GFF4466	0.69	+0.0
4,460,477	-		GFF4466	0.70	-0.1
4,460,477	-		GFF4466	0.70	+1.2
4,460,477	-		GFF4466	0.70	+0.1
4,460,494	+		GFF4466	0.73	+0.1
4,460,502	-		GFF4466	0.74	+0.8
4,460,508	+		GFF4466	0.75	+0.8
4,460,512	-		GFF4466	0.75	-0.2
4,460,512	-		GFF4466	0.75	+0.9
4,460,523	-		GFF4466	0.77	+1.2
4,460,530	+		GFF4466	0.78	-0.1
4,460,535	+		GFF4466	0.78	-0.1
4,460,537	+		GFF4466	0.79	+0.3
4,460,538	-		GFF4466	0.79	+0.5
4,460,543	-		GFF4466	0.80	+0.3
4,460,553	-		GFF4466	0.81	+0.7
4,460,556	-		GFF4466	0.81	+0.5
4,460,590	-		GFF4466	0.86	+0.0
4,460,656	-				+0.4
4,460,684	+				-1.7
4,460,686	+				-0.4
4,460,694	-				-0.3
4,460,701	+				-0.6
4,460,701	+				+1.9
4,460,701	+				-1.1
4,460,709	-				+1.4
4,460,796	+		GFF4467	0.15	-0.8
4,460,802	-		GFF4467	0.16	-0.3
4,460,804	-		GFF4467	0.16	-0.6
4,460,837	+		GFF4467	0.21	-2.4
4,460,864	+		GFF4467	0.24	+1.2
4,460,864	+		GFF4467	0.24	-0.6
4,460,864	+		GFF4467	0.24	-2.0
4,460,864	+		GFF4467	0.24	+0.0
4,460,873	+		GFF4467	0.26	+1.3
4,460,881	-		GFF4467	0.27	+0.6
4,460,915	+		GFF4467	0.31	+0.2
4,460,919	+		GFF4467	0.32	-0.2
4,460,943	+		GFF4467	0.35	-1.9
4,460,951	-		GFF4467	0.36	+1.2
4,460,979	-		GFF4467	0.40	+0.2
4,460,990	+		GFF4467	0.42	-0.2
4,461,009	-		GFF4467	0.44	-1.7
4,461,009	-		GFF4467	0.44	-1.7
4,461,009	-		GFF4467	0.44	-0.1
4,461,009	-		GFF4467	0.44	-0.8
4,461,019	-		GFF4467	0.46	-0.1
4,461,022	+		GFF4467	0.46	+0.1
4,461,027	+		GFF4467	0.47	-1.4
4,461,045	-		GFF4467	0.49	+1.7
4,461,054	-		GFF4467	0.50	+0.8
4,461,095	-		GFF4467	0.56	+0.9
4,461,101	-		GFF4467	0.57	-1.4
4,461,105	-		GFF4467	0.57	+0.7
4,461,114	-		GFF4467	0.59	-0.1
4,461,132	+		GFF4467	0.61	+0.2
4,461,132	+		GFF4467	0.61	-0.6
4,461,137	+		GFF4467	0.62	+0.8
4,461,140	-		GFF4467	0.62	-0.2
4,461,140	-		GFF4467	0.62	+1.1
4,461,181	-		GFF4467	0.68	-0.6
4,461,181	-		GFF4467	0.68	+0.1
4,461,190	+		GFF4467	0.69	+0.4
4,461,190	+		GFF4467	0.69	+0.7
4,461,198	-		GFF4467	0.70	+1.1
4,461,198	-		GFF4467	0.70	-1.1
4,461,215	-		GFF4467	0.72	-1.6
4,461,215	-		GFF4467	0.72	+1.7
4,461,241	-		GFF4467	0.76	-0.2
4,461,254	+		GFF4467	0.78	-1.8
4,461,260	-		GFF4467	0.79	+1.2
4,461,291	+		GFF4467	0.83	+0.7
4,461,317	+		GFF4467	0.86	+1.4
4,461,340	+		GFF4467	0.90	-0.2
4,461,353	-				-1.6
4,461,418	+				-2.2
4,461,418	+				-0.5
4,461,418	+				+0.8
4,461,426	-				-0.4
4,461,440	+				-0.6
4,461,440	+				-1.3
4,461,448	-				+0.0
4,461,448	-				-2.7
4,461,448	-				-2.4
4,461,448	-				+0.1
4,461,467	+				-0.2
4,461,467	+				+0.3
4,461,467	+				-0.8
4,461,472	+				+0.2
4,461,472	+				+0.4
4,461,472	+				-1.3
4,461,472	+				-0.6
4,461,475	-				-2.1
4,461,475	-				+0.2
4,461,480	-				-0.3
4,461,480	-				+0.4
4,461,480	-				-0.8
4,461,480	-				-0.7
4,461,527	+				-1.0
4,461,535	-				+1.1
4,461,537	+				+1.7
4,461,574	+				-0.2
4,461,575	+				-0.5
4,461,582	-				-0.6
4,461,583	-				+1.1
4,461,583	-				+0.6
4,461,591	-				-0.2
4,461,593	+				-1.6
4,461,622	-		GFF4468	0.11	+0.1
4,461,638	+		GFF4468	0.12	+1.2
4,461,659	+		GFF4468	0.13	+0.4
4,461,667	-		GFF4468	0.13	+0.0
4,461,672	-		GFF4468	0.13	+0.5
4,461,673	+		GFF4468	0.14	+1.4
4,461,678	+		GFF4468	0.14	+0.8
4,461,686	-		GFF4468	0.14	+0.5
4,461,700	+		GFF4468	0.15	-0.6
4,461,704	-		GFF4468	0.15	-0.9
4,461,708	+		GFF4468	0.15	-1.1
4,461,710	-		GFF4468	0.15	+1.6
4,461,725	+		GFF4468	0.16	+0.8
4,461,725	+		GFF4468	0.16	+1.8
4,461,725	+		GFF4468	0.16	-0.7
4,461,733	-		GFF4468	0.17	+0.7
4,461,762	+		GFF4468	0.18	-0.2
4,461,782	+		GFF4468	0.19	-0.6
4,461,782	+		GFF4468	0.19	-1.7
4,461,790	-		GFF4468	0.20	-0.2
4,461,794	+		GFF4468	0.20	-1.4
4,461,794	+		GFF4468	0.20	-0.1
4,461,813	+		GFF4468	0.21	-1.9
4,461,833	+		GFF4468	0.22	-0.6
4,461,833	+		GFF4468	0.22	-0.7
4,461,833	+		GFF4468	0.22	-0.4
4,461,856	+		GFF4468	0.23	-0.8
4,461,867	-		GFF4468	0.24	+0.1
4,461,891	-		GFF4468	0.25	+0.2
4,461,891	-		GFF4468	0.25	-1.1
4,461,891	-		GFF4468	0.25	+0.2
4,461,900	+		GFF4468	0.25	-1.8
4,461,900	+		GFF4468	0.25	+0.1
4,461,921	+		GFF4468	0.26	-1.2
4,461,924	+		GFF4468	0.27	+0.4
4,461,924	+		GFF4468	0.27	-0.3
4,461,929	-		GFF4468	0.27	+0.9
4,461,934	+		GFF4468	0.27	+0.2
4,461,934	+		GFF4468	0.27	-0.1
4,461,934	+		GFF4468	0.27	+0.2
4,461,939	+		GFF4468	0.27	+0.2
4,461,942	-		GFF4468	0.28	-1.6
4,461,968	-		GFF4468	0.29	-0.2
4,461,974	+		GFF4468	0.29	+1.4
4,462,013	-		GFF4468	0.31	+1.0
4,462,041	+		GFF4468	0.33	+0.2
4,462,049	-		GFF4468	0.33	+0.8
4,462,082	+		GFF4468	0.35	+0.9
4,462,082	+		GFF4468	0.35	-1.6
4,462,082	+		GFF4468	0.35	-1.9
4,462,084	+		GFF4468	0.35	+1.6
4,462,088	+		GFF4468	0.35	-0.3
4,462,090	-		GFF4468	0.35	-0.6
4,462,090	-		GFF4468	0.35	-1.0
4,462,094	-		GFF4468	0.36	-1.8
4,462,096	+		GFF4468	0.36	-1.4
4,462,104	-		GFF4468	0.36	+0.3
4,462,104	-		GFF4468	0.36	+0.4
4,462,110	+		GFF4468	0.36	+0.4
4,462,121	+		GFF4468	0.37	+1.5
4,462,151	-		GFF4468	0.39	-0.4
4,462,163	-		GFF4468	0.39	-1.1
4,462,182	-		GFF4468	0.40	+0.1
4,462,189	-		GFF4468	0.41	-0.6
4,462,199	+		GFF4468	0.41	-1.8
4,462,223	+		GFF4468	0.42	+0.2
4,462,255	-		GFF4468	0.44	-0.2
4,462,260	-		GFF4468	0.44	+0.3
4,462,265	-		GFF4468	0.44	-0.6
4,462,278	+		GFF4468	0.45	-1.6
4,462,288	+		GFF4468	0.46	-1.6
4,462,329	+		GFF4468	0.48	+0.1
4,462,334	+		GFF4468	0.48	-1.1
4,462,342	-		GFF4468	0.49	-0.6
4,462,342	-		GFF4468	0.49	-0.6
4,462,342	-		GFF4468	0.49	+1.4
4,462,355	+		GFF4468	0.49	-1.1
4,462,355	+		GFF4468	0.49	-0.9
4,462,363	-		GFF4468	0.50	+0.8
4,462,380	+		GFF4468	0.50	+0.3