Strain Fitness in Sphingobium sp. HT1-2 around GFF4450

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,445,251	+		GFF4448	0.86	+1.2
4,445,261	+		GFF4448	0.87	-0.1
4,445,261	+		GFF4448	0.87	-0.5
4,445,262	+		GFF4448	0.87	+0.0
4,445,269	-		GFF4448	0.88	+0.2
4,445,273	-		GFF4448	0.89	-0.2
4,445,275	+		GFF4448	0.89	+1.3
4,445,283	-				+1.9
4,445,283	-				+0.1
4,445,283	-				+0.2
4,445,385	+				+0.6
4,445,386	+				-1.5
4,445,394	+				+1.5
4,445,401	+				+2.2
4,445,407	-				+0.1
4,445,420	-				-0.8
4,445,434	-		GFF4449	0.10	-2.5
4,445,486	-		GFF4449	0.17	-1.8
4,445,489	+		GFF4449	0.18	-0.4
4,445,494	+		GFF4449	0.18	+0.9
4,445,502	-		GFF4449	0.20	+0.5
4,445,508	+		GFF4449	0.20	+0.9
4,445,513	+		GFF4449	0.21	-1.5
4,445,516	-		GFF4449	0.21	+0.2
4,445,526	+		GFF4449	0.23	+1.1
4,445,537	+		GFF4449	0.24	+0.6
4,445,542	+		GFF4449	0.25	+0.2
4,445,545	-		GFF4449	0.25	-1.5
4,445,557	+		GFF4449	0.27	+0.4
4,445,557	+		GFF4449	0.27	+1.1
4,445,557	+		GFF4449	0.27	+1.2
4,445,557	-		GFF4449	0.27	-0.1
4,445,565	-		GFF4449	0.28	+0.8
4,445,565	-		GFF4449	0.28	+0.3
4,445,565	-		GFF4449	0.28	-0.6
4,445,566	-		GFF4449	0.28	-0.9
4,445,573	-		GFF4449	0.29	+1.0
4,445,615	+		GFF4449	0.35	-0.9
4,445,615	+		GFF4449	0.35	+0.2
4,445,625	+		GFF4449	0.36	+0.6
4,445,633	-		GFF4449	0.37	+0.9
4,445,638	-		GFF4449	0.38	+0.4
4,445,642	+		GFF4449	0.38	-1.0
4,445,681	+		GFF4449	0.44	-0.4
4,445,681	+		GFF4449	0.44	+0.2
4,445,728	+		GFF4449	0.50	-0.2
4,445,736	-		GFF4449	0.51	+0.6
4,445,746	-		GFF4449	0.52	-1.3
4,445,746	-		GFF4449	0.52	-0.9
4,445,781	+		GFF4449	0.57	-0.7
4,445,785	-		GFF4449	0.58	-0.6
4,445,794	-		GFF4449	0.59	+0.6
4,445,799	-		GFF4449	0.60	-2.1
4,445,817	-		GFF4449	0.62	+0.3
4,445,870	+		GFF4449	0.69	+0.4
4,445,870	+		GFF4449	0.69	+1.0
4,445,873	-		GFF4449	0.70	+1.2
4,445,878	-		GFF4449	0.70	-1.5
4,445,931	+		GFF4449	0.77	+0.7
4,445,954	-		GFF4449	0.81	+0.8
4,445,963	-		GFF4449	0.82	+1.0
4,445,963	-		GFF4449	0.82	-0.6
4,445,972	-		GFF4449	0.83	+1.2
4,446,002	-		GFF4449	0.87	+0.3
4,446,009	+		GFF4449	0.88	+1.6
4,446,017	-		GFF4449	0.89	+0.9
4,446,040	+				-0.7
4,446,040	-				-0.3
4,446,113	-				-0.7
4,446,113	-				+0.9
4,446,131	-				-1.9
4,446,132	+				+0.8
4,446,150	-				+1.7
4,446,165	+				-2.1
4,446,165	+				-2.2
4,446,167	+				-0.1
4,446,175	-				-0.7
4,446,186	+				+1.4
4,446,228	-				+0.1
4,446,236	-				-0.4
4,446,261	+				+0.7
4,446,269	-				-1.5
4,446,282	+		GFF4450	0.10	+0.2
4,446,292	+		GFF4450	0.12	+0.1
4,446,292	+		GFF4450	0.12	-0.5
4,446,292	+		GFF4450	0.12	-0.3
4,446,294	-		GFF4450	0.13	-0.2
4,446,313	-		GFF4450	0.17	-0.5
4,446,317	+		GFF4450	0.18	-2.0
4,446,323	-		GFF4450	0.19	-2.0
4,446,325	-		GFF4450	0.20	+0.5
4,446,325	-		GFF4450	0.20	+2.0
4,446,332	-		GFF4450	0.21	+0.4
4,446,332	-		GFF4450	0.21	-0.5
4,446,341	+		GFF4450	0.24	-0.8
4,446,359	+		GFF4450	0.28	+0.9
4,446,359	+		GFF4450	0.28	-2.0
4,446,359	+		GFF4450	0.28	+0.7
4,446,411	+		GFF4450	0.39	+1.2
4,446,419	-		GFF4450	0.41	-1.0
4,446,419	-		GFF4450	0.41	+0.6
4,446,459	+		GFF4450	0.50	-0.2
4,446,485	-		GFF4450	0.56	-1.9
4,446,520	+		GFF4450	0.64	-0.8
4,446,522	+		GFF4450	0.65	+0.8
4,446,528	-		GFF4450	0.66	+0.3
4,446,535	+		GFF4450	0.68	+1.2
4,446,535	+		GFF4450	0.68	+0.2
4,446,543	-		GFF4450	0.70	-1.2
4,446,567	+		GFF4450	0.75	+0.4
4,446,567	+		GFF4450	0.75	+0.2
4,446,575	-		GFF4450	0.77	-1.6
4,446,583	+		GFF4450	0.79	+1.3
4,446,584	+		GFF4450	0.79	+1.2
4,446,626	+		GFF4450	0.89	+0.6
4,446,636	+				-0.7
4,446,636	+				-1.7
4,446,636	+				-1.0
4,446,638	+				+0.3
4,446,644	-				+0.8
4,446,644	-				+0.3
4,446,646	-				+0.9
4,446,676	-				+0.4
4,446,703	-				-0.5
4,446,712	+				-0.6
4,446,720	-				+0.2
4,446,720	-				+0.0
4,446,722	+				+2.2
4,446,731	+				+0.6
4,446,731	+				+0.2
4,446,739	-				+1.9
4,446,740	-				+0.7
4,446,740	-				-0.1
4,446,744	-				-1.1
4,446,747	-				-2.2
4,446,773	+				-0.8
4,446,773	+				+0.0
4,446,775	+				+1.1
4,446,781	-				+0.1
4,446,781	-				+1.4
4,446,781	-				-0.2
4,446,781	-				-0.5
4,446,783	-				-0.6
4,446,783	-				+0.4
4,446,793	+				-0.7
4,446,793	+				+0.3
4,446,801	-				-0.0
4,446,832	-				+0.0
4,446,833	+				-0.5
4,446,843	-				+0.4
4,446,843	-				+0.3
4,446,911	+		GFF4451	0.13	+1.1
4,446,919	-		GFF4451	0.14	+1.5
4,446,924	+		GFF4451	0.15	-0.9
4,446,974	+		GFF4451	0.19	-1.0
4,446,980	+		GFF4451	0.19	+0.1
4,446,998	-		GFF4451	0.21	-0.3
4,447,001	-		GFF4451	0.21	+0.1
4,447,020	+		GFF4451	0.22	+0.4
4,447,028	-		GFF4451	0.23	-0.1
4,447,058	-		GFF4451	0.25	-0.1
4,447,086	-		GFF4451	0.28	+1.0
4,447,127	-		GFF4451	0.31	+0.1
4,447,190	+		GFF4451	0.36	-0.3
4,447,316	+		GFF4451	0.46	+0.4
4,447,316	+		GFF4451	0.46	-0.2
4,447,319	-		GFF4451	0.46	+0.0
4,447,324	-		GFF4451	0.47	+1.0
4,447,324	-		GFF4451	0.47	+1.5
4,447,325	-		GFF4451	0.47	-0.6
4,447,329	+		GFF4451	0.47	+0.3
4,447,337	+		GFF4451	0.48	-0.5
4,447,337	+		GFF4451	0.48	+1.9
4,447,337	+		GFF4451	0.48	-1.0
4,447,337	+		GFF4451	0.48	-1.3
4,447,337	+		GFF4451	0.48	+0.9
4,447,337	+		GFF4451	0.48	-1.2
4,447,337	+		GFF4451	0.48	-2.6
4,447,337	+		GFF4451	0.48	-0.2
4,447,337	+		GFF4451	0.48	+0.7
4,447,337	+		GFF4451	0.48	+0.6
4,447,337	-		GFF4451	0.48	+0.3
4,447,337	-		GFF4451	0.48	-0.2
4,447,337	-		GFF4451	0.48	-0.2
4,447,345	-		GFF4451	0.49	-0.4
4,447,345	-		GFF4451	0.49	+0.7
4,447,345	-		GFF4451	0.49	-0.6
4,447,345	-		GFF4451	0.49	-2.0
4,447,345	-		GFF4451	0.49	+0.3
4,447,345	-		GFF4451	0.49	+0.2
4,447,345	-		GFF4451	0.49	+1.4
4,447,345	-		GFF4451	0.49	-0.1
4,447,350	-		GFF4451	0.49	-2.6
4,447,363	+		GFF4451	0.50	+0.1
4,447,370	+		GFF4451	0.51	+1.2
4,447,412	+		GFF4451	0.54	-0.9
4,447,415	-		GFF4451	0.54	+1.5
4,447,415	-		GFF4451	0.54	+0.2
4,447,415	-		GFF4451	0.54	+0.0
4,447,417	+		GFF4451	0.54	+1.5
4,447,422	+		GFF4451	0.55	-0.2
4,447,430	-		GFF4451	0.55	+0.4
4,447,430	-		GFF4451	0.55	+1.0
4,447,430	-		GFF4451	0.55	-0.1
4,447,443	-		GFF4451	0.56	+0.0
4,447,443	-		GFF4451	0.56	+1.2
4,447,459	-		GFF4451	0.58	+1.7
4,447,501	-		GFF4451	0.61	+0.9
4,447,509	+		GFF4451	0.62	+0.0
4,447,517	-		GFF4451	0.62	-0.1
4,447,517	-		GFF4451	0.62	+1.1
4,447,543	+		GFF4451	0.64	-2.9
4,447,543	+		GFF4451	0.64	+0.3
4,447,548	+		GFF4451	0.65	-0.5
4,447,548	+		GFF4451	0.65	+1.5
4,447,617	-		GFF4451	0.70	-1.3
4,447,618	+		GFF4451	0.71	-0.1
4,447,619	+		GFF4451	0.71	+1.1
4,447,654	+		GFF4451	0.73	-0.5
4,447,654	+		GFF4451	0.73	+0.6
4,447,659	+		GFF4451	0.74	+0.0
4,447,659	+		GFF4451	0.74	-0.7
4,447,662	-		GFF4451	0.74	+1.6
4,447,662	-		GFF4451	0.74	+0.1
4,447,662	-		GFF4451	0.74	-1.0
4,447,667	-		GFF4451	0.74	+1.5
4,447,667	-		GFF4451	0.74	+1.5
4,447,667	-		GFF4451	0.74	+0.9
4,447,667	-		GFF4451	0.74	+0.7
4,447,671	+		GFF4451	0.75	+1.2
4,447,672	-		GFF4451	0.75	-0.6