Strain Fitness in Sphingobium sp. HT1-2 around GFF4434

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,427,073	+		GFF4433	0.12	+0.6
4,427,073	+		GFF4433	0.12	+0.1
4,427,073	+		GFF4433	0.12	-2.5
4,427,073	+		GFF4433	0.12	+0.1
4,427,073	+		GFF4433	0.12	+0.1
4,427,081	-		GFF4433	0.13	+0.5
4,427,081	-		GFF4433	0.13	+0.0
4,427,088	+		GFF4433	0.14	-1.8
4,427,095	-		GFF4433	0.15	-0.4
4,427,096	-		GFF4433	0.15	-1.0
4,427,096	-		GFF4433	0.15	+0.3
4,427,096	-		GFF4433	0.15	+0.5
4,427,131	-		GFF4433	0.18	-0.4
4,427,163	-		GFF4433	0.22	-1.0
4,427,163	-		GFF4433	0.22	+0.1
4,427,191	+		GFF4433	0.25	-0.6
4,427,198	-		GFF4433	0.25	-1.6
4,427,206	-		GFF4433	0.26	+0.2
4,427,212	-		GFF4433	0.27	-1.2
4,427,214	-		GFF4433	0.27	-0.9
4,427,217	+		GFF4433	0.27	+0.2
4,427,217	-		GFF4433	0.27	-0.5
4,427,221	+		GFF4433	0.28	-1.1
4,427,229	-		GFF4433	0.29	+0.4
4,427,258	+		GFF4433	0.32	-1.6
4,427,258	-		GFF4433	0.32	+0.7
4,427,265	+		GFF4433	0.32	-0.5
4,427,273	-		GFF4433	0.33	+1.0
4,427,275	+		GFF4433	0.33	+0.5
4,427,299	-		GFF4433	0.36	-0.4
4,427,304	+		GFF4433	0.36	+0.1
4,427,309	-		GFF4433	0.37	+0.1
4,427,311	-		GFF4433	0.37	-0.0
4,427,311	-		GFF4433	0.37	-0.1
4,427,323	+		GFF4433	0.38	+0.2
4,427,331	-		GFF4433	0.39	-1.0
4,427,373	+		GFF4433	0.44	-0.2
4,427,373	+		GFF4433	0.44	-1.2
4,427,373	+		GFF4433	0.44	+0.3
4,427,373	+		GFF4433	0.44	-0.6
4,427,381	+		GFF4433	0.44	-0.5
4,427,381	-		GFF4433	0.44	-1.6
4,427,381	-		GFF4433	0.44	+1.4
4,427,381	-		GFF4433	0.44	-0.3
4,427,389	-		GFF4433	0.45	-0.2
4,427,389	-		GFF4433	0.45	+0.0
4,427,407	+		GFF4433	0.47	-0.2
4,427,413	-		GFF4433	0.48	-0.5
4,427,415	-		GFF4433	0.48	-1.0
4,427,431	+		GFF4433	0.50	-2.9
4,427,431	+		GFF4433	0.50	+0.0
4,427,431	+		GFF4433	0.50	-1.9
4,427,431	+		GFF4433	0.50	-0.2
4,427,431	+		GFF4433	0.50	+0.1
4,427,439	-		GFF4433	0.50	-1.5
4,427,439	-		GFF4433	0.50	-1.4
4,427,439	-		GFF4433	0.50	-1.8
4,427,439	-		GFF4433	0.50	-0.3
4,427,439	-		GFF4433	0.50	+0.1
4,427,474	+		GFF4433	0.54	+0.7
4,427,474	+		GFF4433	0.54	+0.3
4,427,474	+		GFF4433	0.54	+0.6
4,427,474	+		GFF4433	0.54	+1.6
4,427,482	-		GFF4433	0.55	+0.6
4,427,482	-		GFF4433	0.55	-0.7
4,427,482	-		GFF4433	0.55	-0.5
4,427,482	-		GFF4433	0.55	-0.1
4,427,482	-		GFF4433	0.55	+1.0
4,427,516	-		GFF4433	0.58	-0.5
4,427,529	+		GFF4433	0.60	-1.3
4,427,531	+		GFF4433	0.60	-1.1
4,427,535	+		GFF4433	0.60	-2.6
4,427,539	-		GFF4433	0.61	+0.5
4,427,539	-		GFF4433	0.61	-0.5
4,427,543	-		GFF4433	0.61	-2.4
4,427,557	-		GFF4433	0.63	+0.3
4,427,562	+		GFF4433	0.63	-2.2
4,427,565	-		GFF4433	0.64	-0.5
4,427,565	-		GFF4433	0.64	+0.0
4,427,565	-		GFF4433	0.64	+1.0
4,427,568	+		GFF4433	0.64	+0.5
4,427,568	+		GFF4433	0.64	-2.5
4,427,576	-		GFF4433	0.65	-1.2
4,427,578	+		GFF4433	0.65	+0.1
4,427,587	-		GFF4433	0.66	+0.1
4,427,591	-		GFF4433	0.66	+0.4
4,427,606	+		GFF4433	0.68	-0.6
4,427,614	-		GFF4433	0.69	-1.6
4,427,623	+		GFF4433	0.70	-2.5
4,427,639	+		GFF4433	0.71	-0.8
4,427,692	-		GFF4433	0.77	-1.1
4,427,694	-		GFF4433	0.77	-0.9
4,427,723	+		GFF4433	0.80	+1.2
4,427,726	+		GFF4433	0.80	+0.0
4,427,731	-		GFF4433	0.81	-1.2
4,427,758	+		GFF4433	0.84	-0.2
4,427,758	+		GFF4433	0.84	+1.3
4,427,766	-		GFF4433	0.84	-0.8
4,427,766	-		GFF4433	0.84	+0.7
4,427,766	-		GFF4433	0.84	-0.7
4,427,766	-		GFF4433	0.84	-0.7
4,427,766	-		GFF4433	0.84	-0.9
4,427,780	+		GFF4433	0.86	-0.3
4,427,780	+		GFF4433	0.86	+0.7
4,427,780	+		GFF4433	0.86	-0.7
4,427,788	-		GFF4433	0.87	+0.6
4,427,788	-		GFF4433	0.87	+1.0
4,427,788	-		GFF4433	0.87	+0.4
4,427,788	-		GFF4433	0.87	+0.1
4,427,802	+		GFF4433	0.88	+0.0
4,427,810	-		GFF4433	0.89	-0.9
4,427,812	+		GFF4433	0.89	-0.4
4,427,812	+		GFF4433	0.89	-0.4
4,427,848	-				-2.6
4,427,854	+				-0.9
4,427,862	-				-1.0
4,427,870	+				+0.3
4,427,870	+				+0.0
4,427,876	+				+0.1
4,427,878	-				+0.1
4,427,883	+				+0.5
4,427,883	+				+0.9
4,427,883	+				-0.1
4,427,883	+				+0.0
4,427,883	+				+0.6
4,427,883	+				+0.3
4,427,884	-				-0.5
4,427,884	-				+1.0
4,427,884	-				-0.8
4,427,891	-				+0.5
4,427,891	-				-0.7
4,427,908	+				-0.5
4,427,908	+				-0.3
4,427,911	-				-1.5
4,427,911	-				-0.2
4,427,913	+				-0.5
4,427,916	-				-0.6
4,427,916	-				+0.3
4,427,916	-				-0.0
4,427,916	-				+0.2
4,427,916	-				+1.2
4,427,923	+				-0.6
4,427,931	-				-2.2
4,427,931	-				-2.5
4,427,931	-				-1.2
4,427,939	+				+1.3
4,427,961	+				-1.3
4,427,961	+				-1.0
4,427,969	-				-0.3
4,427,987	+				+0.6
4,427,995	-				+0.6
4,427,997	+				+0.4
4,427,997	+				-0.3
4,427,998	+				-1.1
4,427,998	+				-0.4
4,427,998	+				-0.0
4,427,998	+				-0.3
4,427,998	+				-0.1
4,427,998	+				-2.2
4,427,998	+				-0.5
4,427,998	+				+1.1
4,427,998	+				-0.6
4,427,998	+				+0.6
4,427,998	+				-0.7
4,428,005	-				+0.2
4,428,006	-				+1.0
4,428,006	-				-0.4
4,428,006	-				-1.4
4,428,006	-				-1.0
4,428,006	-				-0.5
4,428,006	-				-0.4
4,428,006	-				-1.1
4,428,006	-				-1.6
4,428,006	-				+0.1
4,428,007	+				+0.7
4,428,009	+				+0.3
4,428,009	+				+0.7
4,428,013	-				-0.8
4,428,015	-				-1.1
4,428,015	-				-0.3
4,428,017	-				-1.9
4,428,024	+				-0.8
4,428,057	-				+1.2
4,428,062	+				-2.1
4,428,070	-				+1.3
4,428,077	+				-0.9
4,428,078	+				-0.8
4,428,086	-				-2.6
4,428,088	+				-1.5
4,428,088	+				-1.0
4,428,088	+				-1.3
4,428,088	+				-1.5
4,428,088	+				-0.5
4,428,088	+				+0.1
4,428,088	+				-0.3
4,428,088	+				+1.5
4,428,088	+				-0.6
4,428,088	+				-1.7
4,428,088	+				-2.2
4,428,088	+				+0.6
4,428,088	+				-0.5
4,428,088	+				-0.5
4,428,088	+				-1.5
4,428,088	+				+0.2
4,428,088	+				+0.1
4,428,096	-				+0.1
4,428,096	-				-2.3
4,428,096	-				-1.7
4,428,096	-				+0.6
4,428,096	-				+0.4
4,428,096	-				-0.2
4,428,096	-				+0.9
4,428,096	-				+0.9
4,428,096	-				+0.2
4,428,096	-				+0.9
4,428,096	-				+0.3
4,428,096	-				+0.2
4,428,096	-				+0.5
4,428,096	-				-0.7
4,428,096	-				-2.4
4,428,096	-				-1.1
4,428,096	-				+0.2
4,428,096	-				+0.0
4,428,096	-				+0.0
4,428,099	+				+0.5
4,428,104	+				-0.5
4,428,126	+				-0.5
4,428,126	+				+0.5
4,428,126	+				-1.6
4,428,126	+				-2.7
4,428,129	-				-0.9
4,428,131	+				-0.2
4,428,131	+				-0.9
4,428,131	+				-1.0
4,428,134	-				-0.8
4,428,134	-				-0.9
4,428,134	-				+0.4
4,428,139	-				-1.1
4,428,139	-				-0.5
4,428,165	+				-1.6
4,428,165	+				+0.6
4,428,167	-				-1.2
4,428,167	-				-0.2
4,428,167	-				+0.2
4,428,173	-				-0.5
4,428,182	-		GFF4434	0.10	-0.9
4,428,185	+		GFF4434	0.11	+1.8
4,428,187	-		GFF4434	0.11	+1.2
4,428,201	+		GFF4434	0.12	-1.5
4,428,206	+		GFF4434	0.12	+0.0
4,428,212	+		GFF4434	0.13	+0.7
4,428,217	+		GFF4434	0.13	-1.2
4,428,217	+		GFF4434	0.13	-1.3
4,428,217	+		GFF4434	0.13	+0.3
4,428,217	+		GFF4434	0.13	-0.5
4,428,217	+		GFF4434	0.13	-1.6
4,428,217	+		GFF4434	0.13	+0.5
4,428,217	+		GFF4434	0.13	-0.3
4,428,225	-		GFF4434	0.14	-1.1
4,428,225	-		GFF4434	0.14	+0.5
4,428,225	-		GFF4434	0.14	+0.2
4,428,225	-		GFF4434	0.14	-0.7
4,428,225	-		GFF4434	0.14	+0.9
4,428,225	-		GFF4434	0.14	+0.3
4,428,225	-		GFF4434	0.14	+0.1
4,428,229	-		GFF4434	0.15	+0.1
4,428,265	-		GFF4434	0.18	-0.7
4,428,270	+		GFF4434	0.18	-0.6
4,428,270	+		GFF4434	0.18	-0.5
4,428,270	+		GFF4434	0.18	+0.7
4,428,278	-		GFF4434	0.19	-0.5
4,428,278	-		GFF4434	0.19	+0.1
4,428,278	-		GFF4434	0.19	+0.1
4,428,278	-		GFF4434	0.19	-0.9
4,428,293	-		GFF4434	0.20	-0.3
4,428,309	+		GFF4434	0.22	-2.5
4,428,347	-		GFF4434	0.25	+1.4
4,428,352	-		GFF4434	0.25	-0.5
4,428,357	-		GFF4434	0.26	-0.6
4,428,367	-		GFF4434	0.27	-0.5
4,428,376	+		GFF4434	0.28	-0.3
4,428,379	-		GFF4434	0.28	-1.2
4,428,384	-		GFF4434	0.28	+0.7
4,428,384	-		GFF4434	0.28	+0.6
4,428,396	+		GFF4434	0.29	+0.9
4,428,405	+		GFF4434	0.30	-1.8
4,428,410	+		GFF4434	0.31	-0.2
4,428,447	-		GFF4434	0.34	+0.9
4,428,475	+		GFF4434	0.36	-2.0
4,428,475	-		GFF4434	0.36	-0.3
4,428,486	+		GFF4434	0.37	-0.3
4,428,486	+		GFF4434	0.37	-0.6
4,428,489	-		GFF4434	0.38	-1.8
4,428,494	-		GFF4434	0.38	-1.5
4,428,497	+		GFF4434	0.38	-0.9
4,428,498	+		GFF4434	0.38	-0.7
4,428,501	-		GFF4434	0.39	-1.0
4,428,505	-		GFF4434	0.39	-0.2
4,428,507	-		GFF4434	0.39	-1.2
4,428,507	-		GFF4434	0.39	+1.0
4,428,525	+		GFF4434	0.41	-0.1
4,428,525	+		GFF4434	0.41	-0.7
4,428,525	+		GFF4434	0.41	+0.2
4,428,525	+		GFF4434	0.41	-0.2
4,428,525	+		GFF4434	0.41	-0.4
4,428,530	+		GFF4434	0.41	+0.0
4,428,533	-		GFF4434	0.41	+0.1
4,428,533	-		GFF4434	0.41	-0.6
4,428,533	-		GFF4434	0.41	-0.2
4,428,533	-		GFF4434	0.41	-2.2
4,428,533	-		GFF4434	0.41	+0.9
4,428,533	-		GFF4434	0.41	-2.4
4,428,533	-		GFF4434	0.41	-0.8
4,428,533	-		GFF4434	0.41	-3.1
4,428,548	+		GFF4434	0.43	+1.8
4,428,560	-		GFF4434	0.44	+0.6
4,428,591	+		GFF4434	0.47	+0.6
4,428,591	+		GFF4434	0.47	+0.9
4,428,591	+		GFF4434	0.47	+0.1
4,428,592	+		GFF4434	0.47	-0.1
4,428,599	-		GFF4434	0.47	-0.6
4,428,599	-		GFF4434	0.47	-1.8
4,428,600	-		GFF4434	0.47	-2.0
4,428,614	+		GFF4434	0.49	-1.7
4,428,614	+		GFF4434	0.49	-1.1
4,428,618	-		GFF4434	0.49	-0.4
4,428,620	-		GFF4434	0.49	+0.4
4,428,622	-		GFF4434	0.49	-1.2
4,428,631	+		GFF4434	0.50	-0.2
4,428,635	-		GFF4434	0.51	-2.2
4,428,637	-		GFF4434	0.51	+1.2
4,428,650	+		GFF4434	0.52	+0.5
4,428,650	+		GFF4434	0.52	-0.5
4,428,658	-		GFF4434	0.53	-0.1
4,428,667	+		GFF4434	0.53	-1.4
4,428,672	+		GFF4434	0.54	-2.1
4,428,672	+		GFF4434	0.54	-2.2
4,428,672	+		GFF4434	0.54	+0.9
4,428,672	+		GFF4434	0.54	+1.7
4,428,677	+		GFF4434	0.54	+0.0
4,428,677	+		GFF4434	0.54	+0.4
4,428,677	+		GFF4434	0.54	-0.4
4,428,685	+		GFF4434	0.55	-1.4
4,428,685	+		GFF4434	0.55	+0.7
4,428,685	-		GFF4434	0.55	+0.5
4,428,685	-		GFF4434	0.55	-0.5
4,428,690	+		GFF4434	0.55	+0.4
4,428,690	+		GFF4434	0.55	-1.6
4,428,690	+		GFF4434	0.55	-1.8
4,428,693	-		GFF4434	0.56	+0.1
4,428,693	-		GFF4434	0.56	+0.0
4,428,698	+		GFF4434	0.56	-0.7
4,428,698	-		GFF4434	0.56	+0.3
4,428,698	-		GFF4434	0.56	+0.9
4,428,698	-		GFF4434	0.56	+0.1
4,428,707	-		GFF4434	0.57	+0.3
4,428,711	-		GFF4434	0.57	-0.6
4,428,713	+		GFF4434	0.57	+0.8
4,428,713	+		GFF4434	0.57	+0.1
4,428,713	+		GFF4434	0.57	+0.9
4,428,721	-		GFF4434	0.58	+0.8
4,428,721	-		GFF4434	0.58	-0.7
4,428,721	-		GFF4434	0.58	-1.1
4,428,721	-		GFF4434	0.58	+1.3
4,428,726	-		GFF4434	0.59	-1.8
4,428,747	+		GFF4434	0.60	-0.4
4,428,747	+		GFF4434	0.60	+0.7
4,428,755	-		GFF4434	0.61	+0.7
4,428,755	-		GFF4434	0.61	+0.6
4,428,755	-		GFF4434	0.61	-0.1
4,428,771	-		GFF4434	0.63	+0.3
4,428,771	-		GFF4434	0.63	+0.2
4,428,771	-		GFF4434	0.63	+1.1
4,428,785	-		GFF4434	0.64	-0.5
4,428,801	+		GFF4434	0.65	+0.0
4,428,801	+		GFF4434	0.65	-0.4
4,428,822	-		GFF4434	0.67	-0.6
4,428,835	+		GFF4434	0.68	-2.0
4,428,846	+		GFF4434	0.69	-0.7
4,428,852	+		GFF4434	0.70	+0.7
4,428,860	+		GFF4434	0.70	+0.1
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4,429,198	+				-0.6
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4,429,203	+				+0.8
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4,429,262	+				+0.9
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4,429,270	-				-1.9
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