Strain Fitness in Sphingobium sp. HT1-2 around GFF4417

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,412,772	-		GFF4415	0.16	-0.6
4,412,772	-		GFF4415	0.16	-1.9
4,412,781	-		GFF4415	0.19	+0.2
4,412,868	-		GFF4415	0.49	-1.2
4,412,870	+		GFF4415	0.50	-0.4
4,412,893	-		GFF4415	0.57	-2.9
4,412,895	-		GFF4415	0.58	-0.0
4,412,913	-		GFF4415	0.64	-0.0
4,412,939	+		GFF4415	0.73	-0.3
4,412,952	+		GFF4415	0.78	-2.5
4,412,970	-		GFF4415	0.84	+0.3
4,412,974	+		GFF4415	0.85	-0.7
4,412,974	+		GFF4415	0.85	-2.2
4,412,974	+		GFF4415	0.85	-1.7
4,412,977	-		GFF4415	0.86	+1.2
4,412,977	-		GFF4415	0.86	+1.0
4,412,979	+		GFF4415	0.87	+0.5
4,412,979	+		GFF4415	0.87	+2.0
4,412,979	+		GFF4415	0.87	+0.1
4,412,979	+		GFF4415	0.87	+0.5
4,412,979	+		GFF4415	0.87	+1.5
4,412,979	+		GFF4415	0.87	-0.8
4,412,979	+		GFF4415	0.87	-1.8
4,412,982	-		GFF4415	0.88	-1.7
4,412,982	-		GFF4415	0.88	-1.0
4,412,982	-		GFF4415	0.88	+0.1
4,412,982	-		GFF4415	0.88	+0.3
4,412,982	-		GFF4415	0.88	-1.7
4,412,982	-		GFF4415	0.88	-1.2
4,412,987	-		GFF4415	0.89	+0.1
4,412,987	-		GFF4415	0.89	-1.2
4,412,987	-		GFF4415	0.89	-0.8
4,412,987	-		GFF4415	0.89	-1.2
4,412,987	-		GFF4415	0.89	+0.1
4,412,987	-		GFF4415	0.89	+0.2
4,412,987	-		GFF4415	0.89	-0.0
4,412,987	-		GFF4415	0.89	-1.3
4,412,987	-		GFF4415	0.89	-0.8
4,412,987	-		GFF4415	0.89	-1.9
4,412,987	-		GFF4415	0.89	-0.0
4,412,987	-		GFF4415	0.89	-0.4
4,412,987	-		GFF4415	0.89	-0.5
4,412,987	-		GFF4415	0.89	-0.6
4,412,997	+				-0.2
4,412,997	+				-0.2
4,412,997	+				-0.7
4,413,005	-				-2.8
4,413,005	-				+0.0
4,413,005	-				+0.7
4,413,005	-				+0.1
4,413,031	+				-0.7
4,413,053	-				-0.8
4,413,054	-				-1.1
4,413,059	+				-0.7
4,413,059	+				-1.1
4,413,067	-				+0.4
4,413,067	-				-0.0
4,413,067	-				-2.5
4,413,080	+				+1.1
4,413,080	+				+1.1
4,413,086	-				+0.5
4,413,111	+				-0.8
4,413,119	-				-2.0
4,413,129	-				+0.2
4,413,148	+				-0.7
4,413,155	-				-0.7
4,413,160	-				+0.3
4,413,178	+				+0.9
4,413,186	-				-1.9
4,413,195	+				+0.2
4,413,195	-				-0.6
4,413,215	+				-0.7
4,413,222	-				+0.6
4,413,222	-				-0.3
4,413,222	-				-0.4
4,413,222	-				+1.6
4,413,236	+				-0.3
4,413,254	-				-1.6
4,413,254	-				-1.6
4,413,254	-				-0.7
4,413,254	-				-0.6
4,413,270	-				-1.5
4,413,286	+				+0.7
4,413,308	+				+0.7
4,413,310	-				-0.4
4,413,313	+				-0.5
4,413,316	-				+0.0
4,413,352	-				+0.2
4,413,358	-				+0.1
4,413,363	-				+0.1
4,413,407	-				+0.5
4,413,410	+				-0.5
4,413,421	+				-0.1
4,413,424	+				-1.1
4,413,424	+				-0.7
4,413,429	-				-1.2
4,413,432	-		GFF4416	0.10	-1.0
4,413,432	-		GFF4416	0.10	-1.7
4,413,432	-		GFF4416	0.10	+0.8
4,413,437	-		GFF4416	0.11	-0.9
4,413,437	-		GFF4416	0.11	+0.0
4,413,454	+		GFF4416	0.16	-0.6
4,413,530	+		GFF4416	0.36	+1.0
4,413,533	-		GFF4416	0.37	+0.1
4,413,543	-		GFF4416	0.40	-0.6
4,413,554	-		GFF4416	0.43	+0.9
4,413,573	+		GFF4416	0.48	+0.2
4,413,573	+		GFF4416	0.48	-0.2
4,413,573	+		GFF4416	0.48	-1.0
4,413,581	-		GFF4416	0.50	+1.0
4,413,581	-		GFF4416	0.50	+0.6
4,413,581	-		GFF4416	0.50	-0.8
4,413,586	-		GFF4416	0.51	+0.7
4,413,604	+		GFF4416	0.56	-0.4
4,413,634	-		GFF4416	0.64	-0.1
4,413,645	+		GFF4416	0.67	-0.6
4,413,651	+		GFF4416	0.69	-0.4
4,413,658	-		GFF4416	0.70	-0.1
4,413,668	-		GFF4416	0.73	-0.2
4,413,683	+		GFF4416	0.77	-0.8
4,413,684	-		GFF4416	0.77	+0.5
4,413,691	-		GFF4416	0.79	+1.7
4,413,709	+		GFF4416	0.84	-0.2
4,413,710	+		GFF4416	0.84	-0.5
4,413,710	+		GFF4416	0.84	-1.2
4,413,711	+		GFF4416	0.85	+0.1
4,413,717	-		GFF4416	0.86	+0.8
4,413,718	-		GFF4416	0.86	-1.3
4,413,718	-		GFF4416	0.86	-2.2
4,413,718	-		GFF4416	0.86	-0.2
4,413,718	-		GFF4416	0.86	-1.5
4,413,718	-		GFF4416	0.86	+0.6
4,413,718	-		GFF4416	0.86	-1.3
4,413,730	+		GFF4416	0.90	+0.1
4,413,779	+				-0.1
4,413,792	-				+1.0
4,413,793	-				+0.3
4,413,805	+				-2.0
4,413,805	+				+0.4
4,413,810	+				+0.0
4,413,813	-				+0.8
4,413,823	+				-0.0
4,413,831	-		GFF4417	0.11	-0.6
4,413,838	+		GFF4417	0.12	-1.7
4,413,838	+		GFF4417	0.12	+1.3
4,413,845	+		GFF4417	0.13	+1.0
4,413,846	-		GFF4417	0.13	+0.3
4,413,846	-		GFF4417	0.13	-2.5
4,413,846	-		GFF4417	0.13	-0.6
4,413,850	+		GFF4417	0.14	-0.2
4,413,850	+		GFF4417	0.14	-0.7
4,413,850	+		GFF4417	0.14	-1.9
4,413,850	+		GFF4417	0.14	-0.2
4,413,850	+		GFF4417	0.14	+0.0
4,413,850	+		GFF4417	0.14	-0.8
4,413,850	-		GFF4417	0.14	-2.1
4,413,853	-		GFF4417	0.14	-2.0
4,413,858	-		GFF4417	0.15	+0.6
4,413,858	-		GFF4417	0.15	+1.2
4,413,858	-		GFF4417	0.15	+0.2
4,413,858	-		GFF4417	0.15	-2.9
4,413,858	-		GFF4417	0.15	-2.2
4,413,858	-		GFF4417	0.15	+1.5
4,413,858	-		GFF4417	0.15	-1.3
4,413,863	-		GFF4417	0.16	-1.2
4,413,899	-		GFF4417	0.21	-1.1
4,413,915	-		GFF4417	0.24	-0.5
4,413,920	+		GFF4417	0.25	-0.2
4,413,928	-		GFF4417	0.26	-0.8
4,413,945	-		GFF4417	0.29	+0.6
4,413,960	+		GFF4417	0.31	-0.3
4,413,965	+		GFF4417	0.32	-2.0
4,413,969	-		GFF4417	0.33	-0.2
4,413,972	+		GFF4417	0.33	+0.0
4,413,974	-		GFF4417	0.33	-1.0
4,413,994	+		GFF4417	0.37	-0.7
4,413,999	+		GFF4417	0.38	-1.0
4,414,004	+		GFF4417	0.38	-0.6
4,414,004	+		GFF4417	0.38	-0.4
4,414,019	-		GFF4417	0.41	-0.3
4,414,019	-		GFF4417	0.41	+0.1
4,414,050	+		GFF4417	0.46	+0.9
4,414,055	+		GFF4417	0.46	-0.8
4,414,085	-		GFF4417	0.51	-2.8
4,414,096	+		GFF4417	0.53	+0.1
4,414,104	-		GFF4417	0.54	+0.6
4,414,122	+		GFF4417	0.57	+0.9
4,414,132	-		GFF4417	0.59	+0.6
4,414,138	+		GFF4417	0.60	+0.0
4,414,146	+		GFF4417	0.61	-0.7
4,414,146	-		GFF4417	0.61	-1.8
4,414,146	-		GFF4417	0.61	-1.8
4,414,162	+		GFF4417	0.64	-0.7
4,414,203	-		GFF4417	0.70	+0.6
4,414,228	+		GFF4417	0.74	+0.0
4,414,228	+		GFF4417	0.74	-1.0
4,414,228	+		GFF4417	0.74	-0.2
4,414,233	-		GFF4417	0.75	+0.3
4,414,236	-		GFF4417	0.75	-0.7
4,414,271	-		GFF4417	0.81	-1.0
4,414,294	-		GFF4417	0.85	+0.6
4,414,308	-		GFF4417	0.87	-0.3
4,414,309	+		GFF4417	0.87	+0.5
4,414,365	+				+0.9
4,414,368	+				-2.3
4,414,424	+				-0.3
4,414,426	-				+0.9
4,414,504	-				+0.9
4,414,504	-				-0.6
4,414,519	+				-0.2
4,414,519	+				+0.3
4,414,522	-				-0.5
4,414,524	+				-0.4
4,414,524	+				+0.4
4,414,524	+				+0.9
4,414,524	+				-0.9
4,414,524	+				+0.0
4,414,527	-				-1.7
4,414,527	-				+0.5
4,414,529	+				+0.7
4,414,532	-				+0.0
4,414,532	-				+0.0
4,414,532	-				-1.4
4,414,532	-				+1.0
4,414,554	-				-0.1
4,414,580	+				-0.3
4,414,588	-		GFF4418	0.11	-2.2
4,414,590	+		GFF4418	0.11	-0.9
4,414,590	+		GFF4418	0.11	-0.6
4,414,590	+		GFF4418	0.11	-2.0
4,414,590	+		GFF4418	0.11	-2.3
4,414,590	+		GFF4418	0.11	+0.5
4,414,590	+		GFF4418	0.11	-0.6
4,414,590	+		GFF4418	0.11	+0.8
4,414,598	-		GFF4418	0.12	-1.2
4,414,598	-		GFF4418	0.12	-0.3
4,414,598	-		GFF4418	0.12	-2.3
4,414,615	-		GFF4418	0.14	+0.3
4,414,627	+		GFF4418	0.15	+0.0
4,414,640	-		GFF4418	0.16	+0.4
4,414,640	-		GFF4418	0.16	-0.4
4,414,642	+		GFF4418	0.17	+0.4
4,414,642	+		GFF4418	0.17	-0.5
4,414,642	+		GFF4418	0.17	+0.2
4,414,649	+		GFF4418	0.17	-0.1
4,414,650	+		GFF4418	0.18	+1.7
4,414,650	-		GFF4418	0.18	-0.7
4,414,650	-		GFF4418	0.18	+0.9
4,414,650	-		GFF4418	0.18	-1.0
4,414,650	-		GFF4418	0.18	-0.1
4,414,677	+		GFF4418	0.20	-0.9
4,414,717	+		GFF4418	0.25	+0.6
4,414,744	-		GFF4418	0.28	-0.2
4,414,752	+		GFF4418	0.29	-1.4
4,414,752	+		GFF4418	0.29	-0.9
4,414,757	+		GFF4418	0.29	+0.3
4,414,760	-		GFF4418	0.30	+2.3
4,414,767	+		GFF4418	0.30	+0.0
4,414,770	-		GFF4418	0.31	-0.3
4,414,827	+		GFF4418	0.37	-0.2
4,414,827	+		GFF4418	0.37	+0.1
4,414,827	+		GFF4418	0.37	-0.0
4,414,827	+		GFF4418	0.37	-1.6
4,414,827	+		GFF4418	0.37	-1.6
4,414,827	+		GFF4418	0.37	+0.0
4,414,827	+		GFF4418	0.37	+0.4
4,414,827	+		GFF4418	0.37	+0.0
4,414,827	+		GFF4418	0.37	+0.2
4,414,827	+		GFF4418	0.37	-0.2
4,414,827	+		GFF4418	0.37	-1.6
4,414,827	+		GFF4418	0.37	+0.2
4,414,827	+		GFF4418	0.37	-0.1
4,414,827	+		GFF4418	0.37	-0.6
4,414,827	+		GFF4418	0.37	-0.7
4,414,827	+		GFF4418	0.37	-0.7
4,414,827	+		GFF4418	0.37	-0.5
4,414,827	+		GFF4418	0.37	-0.6
4,414,827	+		GFF4418	0.37	+1.8
4,414,827	+		GFF4418	0.37	+1.3
4,414,827	+		GFF4418	0.37	-1.9
4,414,827	+		GFF4418	0.37	+1.7
4,414,827	+		GFF4418	0.37	-0.1
4,414,827	+		GFF4418	0.37	-0.9
4,414,835	-		GFF4418	0.38	+0.5
4,414,835	-		GFF4418	0.38	-0.7
4,414,835	-		GFF4418	0.38	-0.5
4,414,835	-		GFF4418	0.38	-1.9
4,414,835	-		GFF4418	0.38	+0.3
4,414,835	-		GFF4418	0.38	-1.3
4,414,835	-		GFF4418	0.38	+0.2
4,414,835	-		GFF4418	0.38	-0.9
4,414,835	-		GFF4418	0.38	-2.1
4,414,835	-		GFF4418	0.38	+1.4
4,414,835	-		GFF4418	0.38	-0.4
4,414,835	-		GFF4418	0.38	-0.7
4,414,835	-		GFF4418	0.38	-1.6
4,414,835	-		GFF4418	0.38	-0.7
4,414,835	-		GFF4418	0.38	-0.8
4,414,835	-		GFF4418	0.38	-0.5
4,414,835	-		GFF4418	0.38	+1.7
4,414,835	-		GFF4418	0.38	-0.8
4,414,835	-		GFF4418	0.38	+0.1
4,414,835	-		GFF4418	0.38	+0.5
4,414,835	-		GFF4418	0.38	+1.3
4,414,837	+		GFF4418	0.38	-0.8
4,414,837	+		GFF4418	0.38	-2.0
4,414,837	+		GFF4418	0.38	-2.1
4,414,837	+		GFF4418	0.38	+0.2
4,414,837	+		GFF4418	0.38	+0.8
4,414,837	+		GFF4418	0.38	+0.2
4,414,837	+		GFF4418	0.38	+1.8
4,414,837	+		GFF4418	0.38	+0.3
4,414,837	+		GFF4418	0.38	-0.2
4,414,837	+		GFF4418	0.38	+0.4
4,414,837	+		GFF4418	0.38	-0.1
4,414,837	+		GFF4418	0.38	+0.1
4,414,837	+		GFF4418	0.38	+0.0
4,414,837	+		GFF4418	0.38	+0.3
4,414,837	+		GFF4418	0.38	+0.4
4,414,837	+		GFF4418	0.38	-0.5
4,414,837	+		GFF4418	0.38	+1.3
4,414,837	+		GFF4418	0.38	+0.8
4,414,837	+		GFF4418	0.38	-1.8
4,414,837	+		GFF4418	0.38	-0.4
4,414,845	-		GFF4418	0.39	+0.8
4,414,845	-		GFF4418	0.39	+0.3
4,414,845	-		GFF4418	0.39	-0.9
4,414,845	-		GFF4418	0.39	-0.1
4,414,845	-		GFF4418	0.39	+0.9
4,414,845	-		GFF4418	0.39	+0.2
4,414,845	-		GFF4418	0.39	-1.2
4,414,845	-		GFF4418	0.39	-0.1
4,414,845	-		GFF4418	0.39	+0.6
4,414,845	-		GFF4418	0.39	-1.8
4,414,845	-		GFF4418	0.39	-1.5
4,414,845	-		GFF4418	0.39	-1.3
4,414,845	-		GFF4418	0.39	+0.3
4,414,845	-		GFF4418	0.39	-0.6
4,414,845	-		GFF4418	0.39	+0.9
4,414,845	-		GFF4418	0.39	+0.2
4,414,845	-		GFF4418	0.39	+0.2
4,414,845	-		GFF4418	0.39	+0.1
4,414,845	-		GFF4418	0.39	-0.4
4,414,845	-		GFF4418	0.39	-0.2
4,414,845	-		GFF4418	0.39	+0.0
4,414,845	-		GFF4418	0.39	-1.5
4,414,845	-		GFF4418	0.39	-1.6
4,414,860	+		GFF4418	0.40	-1.4
4,414,860	+		GFF4418	0.40	+0.8
4,414,860	+		GFF4418	0.40	+0.1
4,414,860	+		GFF4418	0.40	-0.1
4,414,860	+		GFF4418	0.40	+0.1
4,414,860	+		GFF4418	0.40	-0.5
4,414,860	+		GFF4418	0.40	-0.3
4,414,860	+		GFF4418	0.40	+0.4
4,414,860	+		GFF4418	0.40	-1.2
4,414,868	-		GFF4418	0.41	-3.0
4,414,868	-		GFF4418	0.41	+0.5
4,414,868	-		GFF4418	0.41	-0.6
4,414,893	+		GFF4418	0.44	+1.3
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