Strain Fitness in Sphingobium sp. HT1-2 around GFF4407

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,406,140	+		GFF4405	0.57	-2.0
4,406,142	+		GFF4405	0.57	-1.0
4,406,142	+		GFF4405	0.57	-0.9
4,406,142	+		GFF4405	0.57	-0.1
4,406,142	+		GFF4405	0.57	+0.3
4,406,142	+		GFF4405	0.57	-0.9
4,406,142	+		GFF4405	0.57	+1.1
4,406,142	+		GFF4405	0.57	-2.5
4,406,142	+		GFF4405	0.57	-1.2
4,406,142	+		GFF4405	0.57	+0.5
4,406,142	+		GFF4405	0.57	-1.6
4,406,142	+		GFF4405	0.57	-0.7
4,406,142	+		GFF4405	0.57	+0.7
4,406,142	+		GFF4405	0.57	+0.3
4,406,142	+		GFF4405	0.57	-0.8
4,406,174	-		GFF4405	0.60	-2.2
4,406,177	-		GFF4405	0.60	+1.9
4,406,179	-		GFF4405	0.60	-0.5
4,406,184	+		GFF4405	0.61	-2.8
4,406,187	-		GFF4405	0.61	+0.2
4,406,189	+		GFF4405	0.61	+0.1
4,406,212	+		GFF4405	0.63	+1.0
4,406,220	-		GFF4405	0.64	+1.7
4,406,225	-		GFF4405	0.64	-0.1
4,406,233	+		GFF4405	0.65	-0.3
4,406,233	+		GFF4405	0.65	-0.5
4,406,233	+		GFF4405	0.65	-2.7
4,406,233	+		GFF4405	0.65	-0.0
4,406,248	+		GFF4405	0.66	-0.1
4,406,262	-		GFF4405	0.67	+1.1
4,406,269	+		GFF4405	0.68	-0.3
4,406,269	+		GFF4405	0.68	-1.5
4,406,269	+		GFF4405	0.68	+1.2
4,406,269	+		GFF4405	0.68	+1.2
4,406,269	+		GFF4405	0.68	+0.6
4,406,269	+		GFF4405	0.68	-2.1
4,406,269	+		GFF4405	0.68	+0.6
4,406,277	-		GFF4405	0.68	-1.2
4,406,277	-		GFF4405	0.68	+0.3
4,406,277	-		GFF4405	0.68	-1.5
4,406,277	-		GFF4405	0.68	+0.8
4,406,277	-		GFF4405	0.68	-0.4
4,406,277	-		GFF4405	0.68	-0.6
4,406,277	-		GFF4405	0.68	-2.0
4,406,293	+		GFF4405	0.70	+0.6
4,406,299	+		GFF4405	0.70	+0.4
4,406,304	+		GFF4405	0.70	+0.1
4,406,307	-		GFF4405	0.71	-0.5
4,406,312	-		GFF4405	0.71	+0.1
4,406,312	-		GFF4405	0.71	-0.2
4,406,312	-		GFF4405	0.71	-0.5
4,406,312	-		GFF4405	0.71	+0.5
4,406,312	-		GFF4405	0.71	-0.0
4,406,312	-		GFF4405	0.71	-1.3
4,406,312	-		GFF4405	0.71	-1.5
4,406,317	-		GFF4405	0.72	-0.6
4,406,331	-		GFF4405	0.73	-1.0
4,406,331	-		GFF4405	0.73	+0.7
4,406,343	+		GFF4405	0.74	+1.4
4,406,369	+		GFF4405	0.76	+0.7
4,406,369	+		GFF4405	0.76	-0.1
4,406,371	+		GFF4405	0.76	-0.4
4,406,375	+		GFF4405	0.76	+0.3
4,406,375	+		GFF4405	0.76	-0.1
4,406,377	-		GFF4405	0.76	-0.1
4,406,383	+		GFF4405	0.77	-1.9
4,406,383	+		GFF4405	0.77	+0.3
4,406,388	+		GFF4405	0.77	+0.1
4,406,391	-		GFF4405	0.78	+0.7
4,406,392	+		GFF4405	0.78	+1.1
4,406,392	+		GFF4405	0.78	-1.1
4,406,399	+		GFF4405	0.78	+0.1
4,406,402	+		GFF4405	0.79	-0.3
4,406,402	+		GFF4405	0.79	-0.9
4,406,402	+		GFF4405	0.79	-0.3
4,406,402	+		GFF4405	0.79	-1.0
4,406,402	+		GFF4405	0.79	-0.9
4,406,402	+		GFF4405	0.79	+0.1
4,406,402	+		GFF4405	0.79	+1.0
4,406,402	+		GFF4405	0.79	+0.9
4,406,407	+		GFF4405	0.79	+0.1
4,406,407	+		GFF4405	0.79	-1.5
4,406,410	-		GFF4405	0.79	+0.8
4,406,410	-		GFF4405	0.79	+0.0
4,406,410	-		GFF4405	0.79	-1.0
4,406,410	-		GFF4405	0.79	-1.5
4,406,410	-		GFF4405	0.79	+0.1
4,406,410	-		GFF4405	0.79	-0.1
4,406,410	-		GFF4405	0.79	-1.8
4,406,410	-		GFF4405	0.79	+0.9
4,406,410	-		GFF4405	0.79	-0.3
4,406,410	-		GFF4405	0.79	-0.4
4,406,410	-		GFF4405	0.79	+1.0
4,406,415	-		GFF4405	0.80	-0.3
4,406,420	-		GFF4405	0.80	-0.7
4,406,420	-		GFF4405	0.80	-0.6
4,406,420	-		GFF4405	0.80	+0.1
4,406,425	-		GFF4405	0.80	-0.2
4,406,425	-		GFF4405	0.80	-0.8
4,406,426	-		GFF4405	0.81	-1.3
4,406,432	-		GFF4405	0.81	-0.5
4,406,433	-		GFF4405	0.81	+1.7
4,406,440	-		GFF4405	0.82	-1.0
4,406,440	-		GFF4405	0.82	-1.5
4,406,440	-		GFF4405	0.82	-2.3
4,406,697	+				-0.1
4,406,706	+				-0.0
4,406,706	+				+0.8
4,406,706	+				+0.6
4,406,706	+				-0.7
4,406,721	-				+0.6
4,406,721	-				-2.0
4,406,723	+				-0.7
4,406,723	+				-1.1
4,406,723	+				-0.6
4,406,731	-				-2.3
4,406,731	-				-0.0
4,406,733	-				-0.0
4,406,733	-				-0.2
4,406,775	+				-0.1
4,406,783	-				-0.6
4,406,799	+				-0.4
4,406,805	+				-0.6
4,406,815	+				+0.6
4,406,889	-		GFF4406	0.70	-0.2
4,406,917	-				+1.0
4,406,917	-				-1.1
4,406,919	+				-1.6
4,406,919	+				+0.4
4,406,919	+				+0.3
4,406,919	+				-2.4
4,406,919	+				+0.4
4,406,919	+				-0.2
4,406,919	+				+1.5
4,406,919	+				+0.7
4,406,919	+				+0.7
4,406,919	+				-0.8
4,406,919	+				+0.9
4,406,919	+				-0.6
4,406,927	-				-0.4
4,406,927	-				+0.5
4,406,927	-				-1.9
4,406,927	-				-0.9
4,406,927	-				+0.4
4,406,927	-				+1.1
4,406,927	-				-1.5
4,406,927	-				-0.5
4,406,927	-				-1.1
4,406,927	-				-0.1
4,406,927	-				-0.9
4,406,927	-				+0.2
4,406,927	-				-0.1
4,406,927	-				-0.9
4,406,927	-				-1.7
4,406,927	-				+0.1
4,406,927	-				-0.2
4,406,927	-				+1.0
4,406,927	-				-0.2
4,406,927	-				+0.1
4,406,927	-				-1.6
4,406,927	-				-0.2
4,406,929	+				-0.6
4,406,933	+				-1.5
4,406,933	+				+1.9
4,406,941	-				-0.4
4,406,941	-				-0.2
4,406,956	-				-0.2
4,406,961	+				+0.6
4,406,964	-				+0.5
4,406,964	-				-0.8
4,406,987	+				+0.7
4,406,995	-				+1.4
4,406,997	-				-2.3
4,406,999	+				+0.5
4,407,018	-				+0.8
4,407,049	+				+1.2
4,407,094	+				-0.3
4,407,094	+				-0.1
4,407,094	+				+0.3
4,407,102	-				-0.4
4,407,102	-				-0.3
4,407,102	-				-0.6
4,407,112	-				-0.2
4,407,134	-				-0.0
4,407,134	-				-2.3
4,407,140	-				-0.4
4,407,146	+				+0.8
4,407,146	+				-0.4
4,407,146	+				-0.0
4,407,146	+				+0.8
4,407,146	+				-0.7
4,407,146	+				-1.5
4,407,154	-				+0.8
4,407,154	-				-2.4
4,407,154	-				+0.5
4,407,154	-				+0.9
4,407,161	+				+0.0
4,407,183	-				+1.6
4,407,196	-				-1.7
4,407,204	+				-1.4
4,407,211	+				-0.6
4,407,230	+				+0.1
4,407,231	-				+0.2
4,407,235	+				-1.3
4,407,235	+				-1.7
4,407,235	+				-0.4
4,407,235	+				-0.0
4,407,235	+				+0.6
4,407,243	+				+0.1
4,407,243	-				+0.0
4,407,251	-				-0.4
4,407,251	-				-0.3
4,407,251	-				-0.4
4,407,261	+		GFF4407	0.10	+0.7
4,407,277	-		GFF4407	0.12	+0.6
4,407,282	+		GFF4407	0.12	+0.7
4,407,292	-		GFF4407	0.13	+0.2
4,407,304	+		GFF4407	0.14	+0.3
4,407,304	+		GFF4407	0.14	-1.6
4,407,304	+		GFF4407	0.14	-1.9
4,407,304	+		GFF4407	0.14	+0.7
4,407,304	+		GFF4407	0.14	+0.4
4,407,312	-		GFF4407	0.14	+0.2
4,407,312	-		GFF4407	0.14	+0.3
4,407,323	+		GFF4407	0.15	+0.4
4,407,327	+		GFF4407	0.16	-0.7
4,407,331	-		GFF4407	0.16	+0.8
4,407,331	-		GFF4407	0.16	-1.7
4,407,350	+		GFF4407	0.17	-0.1
4,407,350	+		GFF4407	0.17	+0.5
4,407,350	+		GFF4407	0.17	-2.5
4,407,350	+		GFF4407	0.17	-0.5
4,407,359	+		GFF4407	0.18	-0.3
4,407,359	+		GFF4407	0.18	-1.8
4,407,367	-		GFF4407	0.19	-0.4
4,407,395	+		GFF4407	0.21	+0.5
4,407,407	+		GFF4407	0.22	-0.0
4,407,411	+		GFF4407	0.22	-0.0
4,407,411	+		GFF4407	0.22	-1.7
4,407,413	-		GFF4407	0.22	-0.6
4,407,417	-		GFF4407	0.23	-2.3
4,407,419	-		GFF4407	0.23	-2.0
4,407,419	-		GFF4407	0.23	-2.4
4,407,419	-		GFF4407	0.23	+1.2
4,407,435	+		GFF4407	0.24	+0.3
4,407,436	+		GFF4407	0.24	+0.1
4,407,439	-		GFF4407	0.25	+0.6
4,407,454	+		GFF4407	0.26	-0.8
4,407,466	+		GFF4407	0.27	-0.9
4,407,471	+		GFF4407	0.27	-2.4
4,407,471	+		GFF4407	0.27	+0.5
4,407,473	+		GFF4407	0.27	-0.2
4,407,474	-		GFF4407	0.27	-0.1
4,407,474	-		GFF4407	0.27	-1.2
4,407,478	+		GFF4407	0.28	+0.5
4,407,478	+		GFF4407	0.28	+0.7
4,407,478	+		GFF4407	0.28	-0.2
4,407,483	+		GFF4407	0.28	-0.8
4,407,483	+		GFF4407	0.28	-0.4
4,407,483	+		GFF4407	0.28	+0.2
4,407,486	-		GFF4407	0.28	-0.9
4,407,491	-		GFF4407	0.29	-0.1
4,407,491	-		GFF4407	0.29	-0.7
4,407,491	-		GFF4407	0.29	+0.1
4,407,501	+		GFF4407	0.29	+0.4
4,407,501	+		GFF4407	0.29	+0.8
4,407,501	-		GFF4407	0.29	-2.5
4,407,509	+		GFF4407	0.30	-0.7
4,407,509	-		GFF4407	0.30	+1.2
4,407,518	+		GFF4407	0.31	-0.3
4,407,521	-		GFF4407	0.31	-0.6
4,407,526	-		GFF4407	0.31	+0.4
4,407,579	+		GFF4407	0.36	-0.1
4,407,587	-		GFF4407	0.36	-0.8
4,407,589	+		GFF4407	0.37	-1.8
4,407,589	+		GFF4407	0.37	-0.6
4,407,589	+		GFF4407	0.37	+1.1
4,407,589	+		GFF4407	0.37	-1.2
4,407,589	+		GFF4407	0.37	-2.5
4,407,597	-		GFF4407	0.37	-0.3
4,407,597	-		GFF4407	0.37	-0.0
4,407,597	-		GFF4407	0.37	-0.5
4,407,618	-		GFF4407	0.39	-0.9
4,407,634	+		GFF4407	0.40	-0.8
4,407,653	+		GFF4407	0.42	+0.1
4,407,653	+		GFF4407	0.42	-0.3
4,407,653	+		GFF4407	0.42	+0.7
4,407,653	+		GFF4407	0.42	-0.9
4,407,653	+		GFF4407	0.42	-0.7
4,407,653	+		GFF4407	0.42	+0.1
4,407,653	+		GFF4407	0.42	-1.0
4,407,653	+		GFF4407	0.42	-0.0
4,407,653	+		GFF4407	0.42	-0.6
4,407,653	+		GFF4407	0.42	-2.8
4,407,653	+		GFF4407	0.42	+1.0
4,407,653	+		GFF4407	0.42	-1.4
4,407,653	+		GFF4407	0.42	-1.1
4,407,653	+		GFF4407	0.42	-0.3
4,407,660	-		GFF4407	0.42	-1.5
4,407,661	-		GFF4407	0.42	-0.8
4,407,661	-		GFF4407	0.42	+0.5
4,407,661	-		GFF4407	0.42	-0.2
4,407,661	-		GFF4407	0.42	+0.1
4,407,661	-		GFF4407	0.42	+0.3
4,407,661	-		GFF4407	0.42	+1.0
4,407,661	-		GFF4407	0.42	+0.5
4,407,661	-		GFF4407	0.42	-0.0
4,407,661	-		GFF4407	0.42	+0.4
4,407,661	-		GFF4407	0.42	-0.6
4,407,661	-		GFF4407	0.42	+1.0
4,407,690	+		GFF4407	0.45	-1.5
4,407,690	+		GFF4407	0.45	+0.3
4,407,690	+		GFF4407	0.45	-0.8
4,407,690	+		GFF4407	0.45	-0.8
4,407,690	+		GFF4407	0.45	-0.5
4,407,690	+		GFF4407	0.45	-2.3
4,407,690	+		GFF4407	0.45	-0.9
4,407,698	-		GFF4407	0.45	-0.3
4,407,698	-		GFF4407	0.45	-0.5
4,407,703	-		GFF4407	0.46	-0.8
4,407,711	-		GFF4407	0.46	+0.2
4,407,713	+		GFF4407	0.46	-0.9
4,407,764	-		GFF4407	0.51	-0.5
4,407,772	-		GFF4407	0.51	+0.4
4,407,782	-		GFF4407	0.52	-0.3
4,407,794	+		GFF4407	0.53	-1.1
4,407,794	+		GFF4407	0.53	-1.4
4,407,806	+		GFF4407	0.54	-0.9
4,407,806	+		GFF4407	0.54	-0.7
4,407,806	+		GFF4407	0.54	-2.1
4,407,806	+		GFF4407	0.54	+1.4
4,407,814	-		GFF4407	0.55	-2.0
4,407,822	+		GFF4407	0.55	-1.6
4,407,829	+		GFF4407	0.56	-0.5
4,407,830	+		GFF4407	0.56	-0.1
4,407,830	-		GFF4407	0.56	-0.3
4,407,837	-		GFF4407	0.56	-0.8
4,407,847	+		GFF4407	0.57	-0.3
4,407,855	-		GFF4407	0.58	-0.9
4,407,888	-		GFF4407	0.60	-0.3
4,407,899	+		GFF4407	0.61	-0.2
4,407,899	+		GFF4407	0.61	+0.8
4,407,904	+		GFF4407	0.62	-0.6
4,407,907	-		GFF4407	0.62	-1.7
4,407,909	-		GFF4407	0.62	+0.8
4,407,912	-		GFF4407	0.62	+0.1
4,407,922	+		GFF4407	0.63	-0.7
4,407,924	+		GFF4407	0.63	+0.2
4,407,924	+		GFF4407	0.63	-0.6
4,407,925	-		GFF4407	0.63	+1.2
4,407,928	+		GFF4407	0.64	-0.2
4,407,952	+		GFF4407	0.66	-0.8
4,407,952	+		GFF4407	0.66	-2.3
4,407,952	+		GFF4407	0.66	+0.1
4,407,952	+		GFF4407	0.66	+1.2
4,407,952	+		GFF4407	0.66	-0.5
4,407,952	+		GFF4407	0.66	-3.0
4,407,960	-		GFF4407	0.66	+0.1
4,407,960	-		GFF4407	0.66	-0.5
4,407,960	-		GFF4407	0.66	-0.6
4,407,960	-		GFF4407	0.66	+0.3
4,407,960	-		GFF4407	0.66	-0.3
4,407,971	+		GFF4407	0.67	+0.9
4,407,986	+		GFF4407	0.68	-0.7
4,407,998	+		GFF4407	0.69	+1.0
4,408,006	-		GFF4407	0.70	+0.1
4,408,019	+		GFF4407	0.71	-0.2
4,408,027	+		GFF4407	0.72	-1.3
4,408,027	-		GFF4407	0.72	-1.9
4,408,029	+		GFF4407	0.72	+0.4
4,408,037	-		GFF4407	0.72	+0.2
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4,408,046	+		GFF4407	0.73	-1.7
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4,408,174	+		GFF4407	0.83	-0.8
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4,408,233	+		GFF4407	0.88	-2.0
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4,408,255	+		GFF4407	0.90	+0.1
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4,408,264	-				-2.2
4,408,272	+				-1.7
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4,408,274	+				+0.5
4,408,274	+				-0.4
4,408,274	+				+0.3
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4,408,281	-				+0.1
4,408,282	-				-0.9
4,408,282	-				-0.5
4,408,282	-				-0.8
4,408,295	+				-2.2
4,408,303	+				-1.3
4,408,303	-				-3.0
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4,408,345	-				+0.5
4,408,347	+				-0.2
4,408,350	-				-2.6
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4,408,355	-				-0.5
4,408,355	-				-0.9
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4,408,363	+				+0.0
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4,408,378	+				-0.4
4,408,378	-				-0.2
4,408,384	-				+0.3
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4,408,397	-				-0.8
4,408,399	-				-0.5
4,408,412	-				-0.5
4,408,439	+				-0.4
4,408,439	-				-2.0
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4,408,439	-				-0.7
4,408,439	-				+0.3
4,408,439	-				-0.4
4,408,447	-				-2.1
4,408,449	-				-1.8
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4,408,489	+		GFF4408	0.18	+0.7
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4,408,497	-		GFF4408	0.20	-1.0
4,408,497	-		GFF4408	0.20	+0.3
4,408,497	-		GFF4408	0.20	-0.1
4,408,497	-		GFF4408	0.20	-0.8
4,408,497	-		GFF4408	0.20	+0.1
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4,408,632	+		GFF4408	0.52	-2.6
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4,408,645	-		GFF4408	0.55	-1.6
4,408,645	-		GFF4408	0.55	-1.3
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4,408,751	+		GFF4408	0.79	-1.9
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4,408,808	+				-1.8
4,408,812	-				-1.5
4,408,828	+				-3.0
4,408,857	-				-2.0
4,408,860	+				-0.6
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