Strain Fitness in Sphingobium sp. HT1-2 around GFF4330

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,332,507	+		GFF4329	0.43	+0.9
4,332,545	-		GFF4329	0.47	+0.9
4,332,545	-		GFF4329	0.47	-0.4
4,332,545	-		GFF4329	0.47	-0.1
4,332,549	-		GFF4329	0.48	+0.2
4,332,549	-		GFF4329	0.48	-0.5
4,332,549	-		GFF4329	0.48	+0.1
4,332,549	-		GFF4329	0.48	+0.3
4,332,554	-		GFF4329	0.48	-0.9
4,332,563	-		GFF4329	0.49	+0.6
4,332,566	-		GFF4329	0.49	+0.2
4,333,137	+				+0.6
4,333,144	+				+0.9
4,333,145	-				-0.2
4,333,149	+				+0.8
4,333,149	-				-1.3
4,333,197	-				-1.6
4,333,198	+				+0.3
4,333,219	+				-0.4
4,333,225	-				-1.8
4,333,228	+				+0.5
4,333,236	-				-0.1
4,333,248	+				-2.1
4,333,254	-				+0.5
4,333,258	+				-0.9
4,333,258	+				+0.5
4,333,258	+				+1.7
4,333,258	+				+0.6
4,333,261	-				-0.7
4,333,265	+				-1.4
4,333,265	+				-0.5
4,333,265	+				+1.1
4,333,265	+				-0.8
4,333,265	+				+0.2
4,333,265	+				+1.0
4,333,265	+				+1.6
4,333,265	+				-0.4
4,333,265	+				-2.5
4,333,265	+				-0.2
4,333,265	+				-0.7
4,333,265	+				+1.9
4,333,265	+				-0.8
4,333,265	+				+0.1
4,333,265	+				-1.2
4,333,265	+				-2.6
4,333,265	+				-0.4
4,333,266	-				-0.4
4,333,266	-				+0.7
4,333,266	-				-0.9
4,333,270	+				-0.5
4,333,271	-				+0.1
4,333,271	-				-0.5
4,333,271	-				-1.4
4,333,271	-				+0.9
4,333,271	-				-3.4
4,333,273	-				-1.7
4,333,273	-				-0.1
4,333,273	-				+0.2
4,333,273	-				-0.5
4,333,273	-				-0.5
4,333,273	-				+0.4
4,333,273	-				-0.2
4,333,273	-				+1.3
4,333,273	-				-0.1
4,333,273	-				-1.1
4,333,273	-				-1.1
4,333,275	+				+0.1
4,333,278	-				-1.8
4,333,287	+				-0.0
4,333,287	+				-1.7
4,333,287	+				-0.8
4,333,287	+				+1.0
4,333,288	-				-1.5
4,333,288	-				+0.7
4,333,290	-				+0.4
4,333,292	+				-1.0
4,333,295	-				-0.8
4,333,299	+				+0.7
4,333,301	+				-2.0
4,333,309	-				-2.0
4,333,320	+				-0.1
4,333,340	+				-0.3
4,333,353	+				-0.4
4,333,353	+				-2.5
4,333,363	+				-0.3
4,333,371	-				-0.9
4,333,390	-				+0.6
4,333,399	-				-1.0
4,333,404	+				-0.3
4,333,405	-				+0.1
4,333,412	+				-1.8
4,333,420	-				-0.0
4,333,420	-				+0.8
4,333,420	-				-2.8
4,333,426	+				+0.8
4,333,428	+				-0.6
4,333,429	-				+0.4
4,333,434	-				-0.4
4,333,436	+				+0.3
4,333,443	+				+0.0
4,333,443	+				+1.4
4,333,443	+				+1.2
4,333,446	+				+0.6
4,333,453	+				+0.7
4,333,456	-				-0.5
4,333,461	-				+0.3
4,333,469	-				-0.1
4,333,480	+		GFF4330	0.13	+0.5
4,333,542	+		GFF4330	0.45	+0.4
4,333,551	+		GFF4330	0.50	-0.5
4,333,578	+		GFF4330	0.64	+0.3
4,333,578	+		GFF4330	0.64	-0.5
4,333,578	+		GFF4330	0.64	-1.7
4,333,586	-		GFF4330	0.68	+0.5
4,333,591	+		GFF4330	0.71	+0.8
4,333,591	+		GFF4330	0.71	-0.2
4,333,599	-		GFF4330	0.75	-0.3
4,333,601	+		GFF4330	0.76	+0.0
4,333,601	-		GFF4330	0.76	-1.7
4,333,611	-		GFF4330	0.81	-0.4
4,333,626	-		GFF4330	0.89	-0.3
4,333,636	+				+0.6
4,333,639	-				-1.9
4,333,645	+				-0.4
4,333,655	+				-0.9
4,333,687	+				-1.4
4,333,692	+				-0.1
4,333,697	+				+0.2
4,333,701	+				-0.9
4,333,704	-				-0.1
4,333,714	-				+0.3
4,333,726	+				-0.0
4,333,748	-				-0.8
4,333,752	-				-0.7
4,333,757	+				-0.4
4,333,765	+				-0.4
4,333,765	+				-0.4
4,333,773	-				-0.7
4,333,773	-				-0.4
4,333,773	-				+0.0
4,333,785	+				-1.0
4,333,790	+				+1.6
4,333,790	+				-1.4
4,333,790	+				+0.7
4,333,803	-				-0.4
4,333,833	+				+0.3
4,333,846	-				-0.4
4,333,881	-		GFF4331	0.11	+0.4
4,333,902	+		GFF4331	0.12	-1.1
4,333,902	+		GFF4331	0.12	-0.3
4,333,925	+		GFF4331	0.13	+0.7
4,333,925	-		GFF4331	0.13	-1.1
4,333,932	+		GFF4331	0.14	-2.2
4,333,934	+		GFF4331	0.14	+0.5
4,333,940	-		GFF4331	0.14	+1.6
4,333,952	+		GFF4331	0.15	+0.8
4,333,970	+		GFF4331	0.15	+0.2
4,333,978	+		GFF4331	0.16	-1.1
4,333,979	-		GFF4331	0.16	+0.2
4,333,979	-		GFF4331	0.16	-0.5
4,333,980	+		GFF4331	0.16	+0.9
4,334,000	-		GFF4331	0.17	-1.0
4,334,001	+		GFF4331	0.17	-2.1
4,334,007	-		GFF4331	0.17	-0.3
4,334,011	+		GFF4331	0.17	-1.9
4,334,011	+		GFF4331	0.17	+0.6
4,334,011	+		GFF4331	0.17	+0.1
4,334,011	+		GFF4331	0.17	+0.5
4,334,011	+		GFF4331	0.17	-0.2
4,334,019	-		GFF4331	0.18	+0.9
4,334,019	-		GFF4331	0.18	+0.1
4,334,019	-		GFF4331	0.18	-0.5
4,334,019	-		GFF4331	0.18	-1.0
4,334,042	-		GFF4331	0.19	-1.0
4,334,046	-		GFF4331	0.19	-0.1
4,334,059	+		GFF4331	0.20	-1.4
4,334,061	-		GFF4331	0.20	-2.2
4,334,106	+		GFF4331	0.22	+0.7
4,334,114	-		GFF4331	0.22	-0.9
4,334,121	-		GFF4331	0.23	-0.4
4,334,170	-		GFF4331	0.25	-2.4
4,334,172	+		GFF4331	0.25	-0.7
4,334,191	-		GFF4331	0.26	-0.4
4,334,197	+		GFF4331	0.26	+1.1
4,334,199	-		GFF4331	0.26	+1.3
4,334,203	+		GFF4331	0.26	+1.2
4,334,203	+		GFF4331	0.26	-1.5
4,334,209	+		GFF4331	0.27	-0.5
4,334,216	-		GFF4331	0.27	+0.7
4,334,217	-		GFF4331	0.27	-1.0
4,334,217	-		GFF4331	0.27	-1.7
4,334,223	-		GFF4331	0.27	+1.0
4,334,228	+		GFF4331	0.28	-2.5
4,334,234	+		GFF4331	0.28	+0.7
4,334,234	+		GFF4331	0.28	+0.2
4,334,242	-		GFF4331	0.28	+0.0
4,334,260	-		GFF4331	0.29	-0.0
4,334,260	-		GFF4331	0.29	+1.0
4,334,260	-		GFF4331	0.29	-0.7
4,334,277	+		GFF4331	0.30	-0.2
4,334,291	+		GFF4331	0.31	-0.3
4,334,323	+		GFF4331	0.32	-0.0
4,334,325	-		GFF4331	0.32	+0.4
4,334,326	-		GFF4331	0.32	-2.0
4,334,332	-		GFF4331	0.33	-0.3
4,334,348	+		GFF4331	0.33	+0.9
4,334,351	-		GFF4331	0.33	+0.1
4,334,351	-		GFF4331	0.33	-0.8
4,334,367	-		GFF4331	0.34	+0.4
4,334,369	+		GFF4331	0.34	-0.0
4,334,372	-		GFF4331	0.34	-1.9
4,334,375	-		GFF4331	0.35	-2.2
4,334,377	-		GFF4331	0.35	-0.4
4,334,377	-		GFF4331	0.35	-0.1
4,334,377	-		GFF4331	0.35	+0.1
4,334,383	+		GFF4331	0.35	+0.1
4,334,388	+		GFF4331	0.35	-1.4
4,334,401	+		GFF4331	0.36	+0.9
4,334,401	-		GFF4331	0.36	-0.1
4,334,416	+		GFF4331	0.37	-1.5
4,334,421	+		GFF4331	0.37	-2.1
4,334,423	+		GFF4331	0.37	+1.0
4,334,423	+		GFF4331	0.37	-1.4
4,334,429	+		GFF4331	0.37	+0.2
4,334,439	-		GFF4331	0.38	-0.5
4,334,473	+		GFF4331	0.39	-1.9
4,334,476	-		GFF4331	0.39	+0.2
4,334,490	-		GFF4331	0.40	+0.8
4,334,496	-		GFF4331	0.40	+0.1
4,334,504	-		GFF4331	0.41	+0.1
4,334,540	+		GFF4331	0.42	-1.5
4,334,540	+		GFF4331	0.42	-2.1
4,334,540	+		GFF4331	0.42	-1.0
4,334,540	+		GFF4331	0.42	-0.1
4,334,540	+		GFF4331	0.42	+1.3
4,334,540	+		GFF4331	0.42	+0.2
4,334,540	+		GFF4331	0.42	-1.0
4,334,540	+		GFF4331	0.42	-0.3
4,334,545	+		GFF4331	0.43	-0.6
4,334,545	+		GFF4331	0.43	+0.0
4,334,548	-		GFF4331	0.43	-0.1
4,334,548	-		GFF4331	0.43	-0.2
4,334,548	-		GFF4331	0.43	-1.7
4,334,548	-		GFF4331	0.43	-0.1
4,334,548	-		GFF4331	0.43	-2.1
4,334,548	-		GFF4331	0.43	+0.1
4,334,548	-		GFF4331	0.43	+0.6
4,334,548	-		GFF4331	0.43	-0.4
4,334,548	-		GFF4331	0.43	+1.1
4,334,548	-		GFF4331	0.43	-0.2
4,334,561	+		GFF4331	0.43	+0.5
4,334,561	+		GFF4331	0.43	+0.2
4,334,561	+		GFF4331	0.43	+0.7
4,334,569	-		GFF4331	0.44	+0.3
4,334,584	-		GFF4331	0.44	+0.6
4,334,608	-		GFF4331	0.46	+0.7
4,334,624	+		GFF4331	0.46	+0.5
4,334,632	+		GFF4331	0.47	-0.3
4,334,643	+		GFF4331	0.47	+0.8
4,334,643	+		GFF4331	0.47	+0.0
4,334,643	-		GFF4331	0.47	-0.0