Strain Fitness in Sphingobium sp. HT1-2 around GFF4296

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,302,849	+		GFF4294	0.10	-0.5
4,302,849	+		GFF4294	0.10	+0.9
4,302,857	-		GFF4294	0.13	-0.5
4,302,863	+		GFF4294	0.15	+0.8
4,302,871	-		GFF4294	0.18	-0.3
4,302,884	+		GFF4294	0.22	+0.4
4,302,927	-		GFF4294	0.38	+0.4
4,302,940	-		GFF4294	0.42	+1.0
4,302,944	+		GFF4294	0.44	+0.3
4,302,944	+		GFF4294	0.44	-0.1
4,302,944	+		GFF4294	0.44	-1.6
4,302,945	-		GFF4294	0.44	-1.3
4,302,952	-		GFF4294	0.46	+0.5
4,302,952	-		GFF4294	0.46	-1.9
4,302,952	-		GFF4294	0.46	-1.2
4,302,962	-		GFF4294	0.50	-0.9
4,302,975	-		GFF4294	0.54	+0.4
4,302,977	+		GFF4294	0.55	-1.2
4,302,983	+		GFF4294	0.57	+0.0
4,302,983	+		GFF4294	0.57	-0.2
4,302,991	-		GFF4294	0.60	-0.9
4,302,996	+		GFF4294	0.62	+0.3
4,303,000	+		GFF4294	0.63	+1.0
4,303,000	+		GFF4294	0.63	-1.8
4,303,008	-		GFF4294	0.66	+0.2
4,303,062	-		GFF4294	0.85	-0.3
4,303,074	-		GFF4294	0.89	-0.1
4,303,090	+				-1.4
4,303,106	+				-2.2
4,303,106	+				-1.1
4,303,106	+				-1.0
4,303,106	+				-2.2
4,303,106	+				-0.1
4,303,106	+				-0.8
4,303,106	+				-1.1
4,303,106	+				-1.5
4,303,106	+				-0.9
4,303,106	+				-2.4
4,303,106	+				-0.4
4,303,106	+				-1.4
4,303,108	-				-2.4
4,303,114	-				-0.8
4,303,114	-				+0.2
4,303,114	-				-0.1
4,303,114	-				+0.3
4,303,114	-				-0.1
4,303,114	-				-0.1
4,303,114	-				-1.4
4,303,114	-				+0.2
4,303,114	-				+0.6
4,303,114	-				-1.4
4,303,114	-				-0.7
4,303,114	-				-1.0
4,303,114	-				+2.0
4,303,114	-				+1.2
4,303,114	-				-1.0
4,303,119	+				+0.5
4,303,121	-				+0.3
4,303,123	+				-0.7
4,303,124	+				+0.6
4,303,131	+				-0.4
4,303,137	+				-0.4
4,303,139	-				-2.0
4,303,139	-				-0.3
4,303,147	+				+0.2
4,303,147	+				-0.0
4,303,147	+				-2.3
4,303,147	+				+0.4
4,303,148	+				+0.1
4,303,155	+				+0.0
4,303,155	-				-0.9
4,303,155	-				+0.0
4,303,155	-				-1.6
4,303,155	-				-0.6
4,303,155	-				-0.8
4,303,155	-				-0.2
4,303,156	-				-0.2
4,303,156	-				+0.9
4,303,160	+				-0.7
4,303,160	+				-1.5
4,303,168	-				+1.4
4,303,168	-				-0.7
4,303,168	-				+0.4
4,303,168	-				+0.9
4,303,168	-				+0.2
4,303,168	-				-2.6
4,303,168	-				-0.7
4,303,168	-				+2.0
4,303,172	+				+0.3
4,303,172	+				+0.3
4,303,172	+				-0.6
4,303,173	-				+0.9
4,303,209	+				+0.4
4,303,209	+				-0.1
4,303,212	-		GFF4295	0.10	+0.5
4,303,213	-		GFF4295	0.10	-1.2
4,303,217	-		GFF4295	0.11	-1.4
4,303,237	+		GFF4295	0.14	-2.5
4,303,251	+		GFF4295	0.16	-1.5
4,303,257	+		GFF4295	0.17	-1.8
4,303,257	+		GFF4295	0.17	+1.1
4,303,259	-		GFF4295	0.18	-0.6
4,303,262	+		GFF4295	0.18	-0.0
4,303,265	-		GFF4295	0.19	-1.0
4,303,265	-		GFF4295	0.19	+0.4
4,303,265	-		GFF4295	0.19	-0.7
4,303,274	-		GFF4295	0.20	+1.4
4,303,281	+		GFF4295	0.21	-1.4
4,303,286	+		GFF4295	0.22	-1.7
4,303,286	+		GFF4295	0.22	+0.8
4,303,286	+		GFF4295	0.22	-0.1
4,303,296	+		GFF4295	0.24	+1.1
4,303,318	+		GFF4295	0.27	+0.4
4,303,328	-		GFF4295	0.29	-0.4
4,303,336	+		GFF4295	0.30	-0.2
4,303,336	+		GFF4295	0.30	+1.3
4,303,336	+		GFF4295	0.30	-1.9
4,303,337	+		GFF4295	0.30	+0.9
4,303,337	+		GFF4295	0.30	+0.1
4,303,344	-		GFF4295	0.31	-0.8
4,303,345	-		GFF4295	0.31	+0.2
4,303,345	-		GFF4295	0.31	-0.0
4,303,351	-		GFF4295	0.32	-0.5
4,303,351	-		GFF4295	0.32	-0.1
4,303,377	-		GFF4295	0.37	+0.1
4,303,409	+		GFF4295	0.42	-0.3
4,303,478	+		GFF4295	0.53	-0.2
4,303,482	+		GFF4295	0.53	+1.1
4,303,482	+		GFF4295	0.53	+0.9
4,303,482	+		GFF4295	0.53	+1.1
4,303,482	+		GFF4295	0.53	+0.2
4,303,482	+		GFF4295	0.53	-0.8
4,303,482	+		GFF4295	0.53	+0.7
4,303,482	+		GFF4295	0.53	+0.3
4,303,486	-		GFF4295	0.54	+0.0
4,303,487	+		GFF4295	0.54	+0.4
4,303,490	-		GFF4295	0.55	+0.6
4,303,490	-		GFF4295	0.55	-0.4
4,303,490	-		GFF4295	0.55	-0.5
4,303,490	-		GFF4295	0.55	+1.3
4,303,490	-		GFF4295	0.55	+0.9
4,303,490	-		GFF4295	0.55	-0.9
4,303,490	-		GFF4295	0.55	+2.2
4,303,490	-		GFF4295	0.55	+0.4
4,303,502	+		GFF4295	0.57	-2.6
4,303,502	+		GFF4295	0.57	+0.6
4,303,505	-		GFF4295	0.57	-0.5
4,303,510	-		GFF4295	0.58	+1.1
4,303,510	-		GFF4295	0.58	-1.4
4,303,510	-		GFF4295	0.58	+0.8
4,303,510	-		GFF4295	0.58	-1.7
4,303,519	+		GFF4295	0.59	-0.7
4,303,525	-		GFF4295	0.60	-0.6
4,303,527	-		GFF4295	0.61	-1.5
4,303,548	-		GFF4295	0.64	+0.3
4,303,560	-		GFF4295	0.66	+0.5
4,303,567	-		GFF4295	0.67	-0.5
4,303,589	-		GFF4295	0.71	-2.4
4,303,612	+		GFF4295	0.74	-1.4
4,303,612	+		GFF4295	0.74	-0.7
4,303,613	+		GFF4295	0.75	-0.5
4,303,656	-		GFF4295	0.81	+0.9
4,303,668	+		GFF4295	0.83	-2.0
4,303,674	+		GFF4295	0.84	-1.6
4,303,682	-		GFF4295	0.86	-0.2
4,303,693	-		GFF4295	0.87	+0.4
4,303,693	-		GFF4295	0.87	-1.4
4,303,749	+				-0.6
4,303,749	+				-0.1
4,303,749	+				+0.2
4,303,749	+				+0.3
4,303,757	-				+0.2
4,303,757	-				+0.8
4,303,757	-				-0.1
4,303,757	-				+0.8
4,303,762	+				+0.8
4,303,768	+				-0.2
4,303,782	+				+1.0
4,303,787	+				-0.1
4,303,795	-				-0.8
4,303,812	+				-1.4
4,303,820	+				+0.6
4,303,822	+				-0.2
4,303,822	+				+0.7
4,303,830	-				-0.2
4,303,830	-				-1.1
4,303,848	-				+1.8
4,303,858	+				-0.3
4,303,865	-				-0.1
4,303,881	+		GFF4296	0.12	-1.5
4,303,891	+		GFF4296	0.14	-0.1
4,303,896	+		GFF4296	0.16	-0.2
4,303,904	-		GFF4296	0.18	-0.2
4,303,912	+		GFF4296	0.20	+0.9
4,303,920	-		GFF4296	0.22	+0.9
4,303,920	-		GFF4296	0.22	-0.2
4,303,920	-		GFF4296	0.22	+1.1
4,303,920	-		GFF4296	0.22	+0.2
4,303,925	+		GFF4296	0.24	+1.7
4,303,925	+		GFF4296	0.24	+1.2
4,303,925	-		GFF4296	0.24	+0.2
4,303,925	-		GFF4296	0.24	+0.3
4,303,926	+		GFF4296	0.24	+0.6
4,303,933	-		GFF4296	0.26	-0.0
4,303,933	-		GFF4296	0.26	-0.2
4,303,937	+		GFF4296	0.27	-1.4
4,303,944	-		GFF4296	0.29	-2.4
4,303,944	-		GFF4296	0.29	-0.8
4,303,945	+		GFF4296	0.29	+0.8
4,303,953	+		GFF4296	0.31	-0.4
4,303,958	+		GFF4296	0.33	-0.6
4,303,963	+		GFF4296	0.34	+0.1
4,303,963	+		GFF4296	0.34	-0.2
4,303,966	-		GFF4296	0.35	-0.5
4,303,972	+		GFF4296	0.37	-1.9
4,303,980	-		GFF4296	0.39	-0.7
4,303,990	-		GFF4296	0.42	-1.7
4,304,022	-		GFF4296	0.50	-1.1
4,304,045	+		GFF4296	0.57	-1.9
4,304,050	+		GFF4296	0.58	-0.1
4,304,052	-		GFF4296	0.59	+0.2
4,304,055	+		GFF4296	0.60	-1.5
4,304,080	+		GFF4296	0.66	-1.4
4,304,086	+		GFF4296	0.68	-1.0
4,304,086	+		GFF4296	0.68	-0.2
4,304,094	-		GFF4296	0.70	-0.0
4,304,094	-		GFF4296	0.70	-0.8
4,304,094	-		GFF4296	0.70	-1.8
4,304,094	-		GFF4296	0.70	+1.6
4,304,094	-		GFF4296	0.70	-0.1
4,304,108	+		GFF4296	0.74	-1.0
4,304,108	+		GFF4296	0.74	-0.8
4,304,108	+		GFF4296	0.74	-0.5
4,304,108	+		GFF4296	0.74	-0.7
4,304,108	+		GFF4296	0.74	-1.0
4,304,108	+		GFF4296	0.74	+0.9
4,304,108	+		GFF4296	0.74	-0.5
4,304,108	+		GFF4296	0.74	+0.8
4,304,108	+		GFF4296	0.74	-0.2
4,304,116	-		GFF4296	0.76	-3.0
4,304,116	-		GFF4296	0.76	-0.7
4,304,116	-		GFF4296	0.76	+0.4
4,304,116	-		GFF4296	0.76	-0.9
4,304,116	-		GFF4296	0.76	+0.4
4,304,119	+		GFF4296	0.77	-1.6
4,304,137	+		GFF4296	0.82	+0.1
4,304,137	+		GFF4296	0.82	+0.9
4,304,144	-		GFF4296	0.84	-1.4
4,304,147	+		GFF4296	0.85	-0.4
4,304,149	+		GFF4296	0.85	-0.7
4,304,159	-		GFF4296	0.88	+0.6
4,304,177	+				+1.9
4,304,177	+				-2.4
4,304,182	+				-0.8
4,304,187	+				+0.9
4,304,188	+				+0.2
4,304,188	+				-0.6
4,304,188	+				-1.2
4,304,188	+				+0.9
4,304,188	+				-0.8
4,304,188	+				-0.1
4,304,188	+				-0.6
4,304,188	+				-0.9
4,304,188	+				+0.6
4,304,188	+				-2.0
4,304,188	+				+1.0
4,304,188	+				+0.0
4,304,196	-				-0.0
4,304,196	-				-0.4
4,304,196	-				-0.4
4,304,196	-				+1.2
4,304,196	-				-1.5
4,304,196	-				-0.5
4,304,196	-				-0.0
4,304,196	-				+0.1
4,304,196	-				-1.4
4,304,196	-				-0.7
4,304,198	+				+0.3
4,304,218	+				+0.9
4,304,259	+				+0.6
4,304,261	+				+0.3
4,304,269	-				+0.3
4,304,269	-				-0.6
4,304,294	+				-0.7
4,304,303	+				-0.5
4,304,303	+				+0.1
4,304,303	+				-0.2
4,304,316	+				-1.5
4,304,323	+				-0.9
4,304,329	-				+0.2
4,304,329	-				-0.1
4,304,330	-				+1.5
4,304,337	-				-0.3
4,304,337	-				+0.8
4,304,337	-				-0.6
4,304,352	+		GFF4297	0.12	+0.6
4,304,363	+		GFF4297	0.16	+1.5
4,304,371	-		GFF4297	0.19	-0.1
4,304,378	+		GFF4297	0.22	+0.5
4,304,395	-		GFF4297	0.28	-0.6
4,304,419	+		GFF4297	0.38	-0.5
4,304,430	-		GFF4297	0.42	-1.0
4,304,442	+		GFF4297	0.46	-1.1
4,304,442	+		GFF4297	0.46	+1.4
4,304,442	+		GFF4297	0.46	-1.6
4,304,450	-		GFF4297	0.49	-0.4
4,304,450	-		GFF4297	0.49	-0.4
4,304,450	-		GFF4297	0.49	-0.6
4,304,450	-		GFF4297	0.49	-2.3
4,304,450	-		GFF4297	0.49	-0.5
4,304,464	+		GFF4297	0.55	+0.7
4,304,477	+		GFF4297	0.60	+0.2
4,304,483	-		GFF4297	0.62	-0.1
4,304,574	-				-0.3
4,304,575	+				-0.2
4,304,583	-				+0.2
4,304,590	-				-1.0
4,304,596	+				-0.0
4,304,616	+				+0.5
4,304,644	-				+1.7
4,304,654	+				-0.5
4,304,662	-				+0.7
4,304,670	-				-2.5
4,304,671	+				-0.1
4,304,673	+				+0.2
4,304,673	+				-1.0
4,304,678	+				+0.9
4,304,680	+				-0.8
4,304,680	+				+1.4
4,304,680	+				-0.6
4,304,680	+				-1.1
4,304,680	+				-1.2
4,304,680	+				-2.7
4,304,680	+				+0.6
4,304,680	+				+0.3
4,304,688	-				-0.5
4,304,688	-				+0.3
4,304,688	-				-0.7
4,304,688	-				-1.1
4,304,688	-				+0.3
4,304,688	-				-0.4
4,304,688	-				-0.9
4,304,688	-				+0.2
4,304,690	+				-1.8
4,304,690	+				+1.8
4,304,707	+				-0.5
4,304,748	+				-0.3
4,304,755	+				-1.1
4,304,765	+				+0.7
4,304,776	+				-0.2
4,304,784	-				+0.5
4,304,784	-				-0.8
4,304,791	+				-0.6
4,304,808	+				+0.3
4,304,859	-				+0.6
4,304,868	+				-0.6
4,304,876	-				-0.7
4,304,878	+				+0.2
4,304,887	+				+0.4
4,304,887	+				+0.9
4,304,887	+				+0.3
4,304,887	+				-1.7
4,304,887	+				-0.3
4,304,887	+				-1.9
4,304,895	-		GFF4298	0.10	-0.3
4,304,895	-		GFF4298	0.10	+0.9
4,304,909	+		GFF4298	0.11	-1.0
4,304,909	+		GFF4298	0.11	-1.7
4,304,915	+		GFF4298	0.11	-1.6
4,304,917	-		GFF4298	0.11	+0.9
4,304,917	-		GFF4298	0.11	-0.9
4,304,917	-		GFF4298	0.11	-1.0
4,304,919	+		GFF4298	0.11	+0.1
4,304,922	+		GFF4298	0.11	-0.2
4,304,927	+		GFF4298	0.11	+1.3
4,304,947	+		GFF4298	0.12	+0.3
4,304,957	+		GFF4298	0.12	+0.9
4,304,957	+		GFF4298	0.12	-0.2
4,304,957	-		GFF4298	0.12	-1.9
4,304,965	-		GFF4298	0.12	-0.2
4,304,965	-		GFF4298	0.12	-1.2
4,304,965	-		GFF4298	0.12	-0.0
4,304,965	-		GFF4298	0.12	+1.0
4,304,965	-		GFF4298	0.12	-0.8
4,304,965	-		GFF4298	0.12	+0.1
4,304,965	-		GFF4298	0.12	+0.7
4,305,000	+		GFF4298	0.13	-1.5
4,305,000	+		GFF4298	0.13	-1.8
4,305,000	+		GFF4298	0.13	+0.1
4,305,000	+		GFF4298	0.13	+0.2
4,305,008	-		GFF4298	0.14	-0.6
4,305,008	-		GFF4298	0.14	-0.7
4,305,008	-		GFF4298	0.14	-0.1
4,305,011	+		GFF4298	0.14	-0.5
4,305,029	-		GFF4298	0.14	+0.1
4,305,042	+		GFF4298	0.15	+0.6
4,305,042	+		GFF4298	0.15	-1.7
4,305,049	+		GFF4298	0.15	-0.9
4,305,050	-		GFF4298	0.15	-1.3
4,305,054	+		GFF4298	0.15	-0.3
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