Strain Fitness in Sphingobium sp. HT1-2 around GFF4281

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,292,520	-		GFF4280	0.13	-1.6
4,292,557	+		GFF4280	0.16	-0.1
4,292,557	+		GFF4280	0.16	+0.4
4,292,562	+		GFF4280	0.17	-0.0
4,292,565	-		GFF4280	0.17	-0.6
4,292,565	-		GFF4280	0.17	-0.2
4,292,581	+		GFF4280	0.19	-0.1
4,292,583	+		GFF4280	0.19	-1.1
4,292,612	+		GFF4280	0.21	-0.6
4,292,615	+		GFF4280	0.22	-1.1
4,292,635	+		GFF4280	0.24	+0.8
4,292,639	+		GFF4280	0.24	+0.0
4,292,639	+		GFF4280	0.24	-1.4
4,292,645	+		GFF4280	0.25	+0.2
4,292,645	+		GFF4280	0.25	-0.9
4,292,645	+		GFF4280	0.25	+0.3
4,292,645	+		GFF4280	0.25	+1.6
4,292,653	-		GFF4280	0.25	-0.2
4,292,653	-		GFF4280	0.25	-0.4
4,292,655	+		GFF4280	0.25	-0.7
4,292,655	+		GFF4280	0.25	-1.4
4,292,655	+		GFF4280	0.25	-0.3
4,292,663	-		GFF4280	0.26	+0.8
4,292,678	+		GFF4280	0.28	-1.2
4,292,683	+		GFF4280	0.28	-1.5
4,292,691	-		GFF4280	0.29	-0.1
4,292,706	-		GFF4280	0.30	+0.1
4,292,708	+		GFF4280	0.31	+1.4
4,292,708	+		GFF4280	0.31	+0.5
4,292,708	+		GFF4280	0.31	+0.6
4,292,708	+		GFF4280	0.31	-0.3
4,292,708	+		GFF4280	0.31	+0.3
4,292,708	+		GFF4280	0.31	-1.1
4,292,708	+		GFF4280	0.31	-0.7
4,292,710	+		GFF4280	0.31	+0.1
4,292,710	+		GFF4280	0.31	-2.7
4,292,710	+		GFF4280	0.31	+0.7
4,292,712	+		GFF4280	0.31	-2.0
4,292,716	-		GFF4280	0.31	-0.6
4,292,716	-		GFF4280	0.31	+1.0
4,292,716	-		GFF4280	0.31	-0.0
4,292,716	-		GFF4280	0.31	-2.3
4,292,716	-		GFF4280	0.31	-1.0
4,292,716	-		GFF4280	0.31	-1.7
4,292,718	-		GFF4280	0.31	-0.8
4,292,718	-		GFF4280	0.31	-1.1
4,292,718	-		GFF4280	0.31	-1.0
4,292,726	-		GFF4280	0.32	-0.4
4,292,726	-		GFF4280	0.32	+0.1
4,292,747	+		GFF4280	0.34	+0.9
4,292,750	-		GFF4280	0.34	+0.3
4,292,752	+		GFF4280	0.35	-0.7
4,292,754	+		GFF4280	0.35	-0.4
4,292,762	-		GFF4280	0.36	+1.8
4,292,765	-		GFF4280	0.36	-0.7
4,292,782	+		GFF4280	0.37	-0.5
4,292,800	-		GFF4280	0.39	+0.4
4,292,806	-		GFF4280	0.40	-0.2
4,292,817	+		GFF4280	0.41	-0.4
4,292,818	+		GFF4280	0.41	+0.4
4,292,818	+		GFF4280	0.41	-0.5
4,292,818	+		GFF4280	0.41	-0.2
4,292,818	+		GFF4280	0.41	-1.0
4,292,823	+		GFF4280	0.41	-2.2
4,292,826	-		GFF4280	0.42	-0.2
4,292,826	-		GFF4280	0.42	-0.7
4,292,831	-		GFF4280	0.42	+0.2
4,292,835	+		GFF4280	0.42	-1.0
4,292,852	-		GFF4280	0.44	-0.2
4,292,854	+		GFF4280	0.44	+1.7
4,292,854	+		GFF4280	0.44	-0.2
4,292,854	+		GFF4280	0.44	+0.0
4,292,854	+		GFF4280	0.44	-1.3
4,292,862	-		GFF4280	0.45	-0.2
4,292,862	-		GFF4280	0.45	+1.0
4,292,862	-		GFF4280	0.45	+0.2
4,292,862	-		GFF4280	0.45	-1.2
4,292,890	+		GFF4280	0.48	-1.1
4,292,901	+		GFF4280	0.49	-0.0
4,292,909	+		GFF4280	0.49	-0.8
4,292,909	+		GFF4280	0.49	-1.6
4,292,917	-		GFF4280	0.50	-1.7
4,292,935	+		GFF4280	0.52	+0.4
4,292,941	+		GFF4280	0.53	-1.0
4,292,942	+		GFF4280	0.53	-1.2
4,292,942	+		GFF4280	0.53	+0.7
4,292,942	+		GFF4280	0.53	-0.7
4,292,942	-		GFF4280	0.53	-0.2
4,292,949	-		GFF4280	0.53	-1.5
4,292,949	-		GFF4280	0.53	+0.9
4,292,949	-		GFF4280	0.53	-1.7
4,292,949	-		GFF4280	0.53	-1.7
4,292,950	-		GFF4280	0.53	-0.3
4,292,950	-		GFF4280	0.53	+0.4
4,292,950	-		GFF4280	0.53	+0.2
4,292,976	-		GFF4280	0.56	-0.4
4,292,976	-		GFF4280	0.56	-0.3
4,292,976	-		GFF4280	0.56	+0.3
4,292,976	-		GFF4280	0.56	-0.5
4,292,989	+		GFF4280	0.57	-0.4
4,292,989	+		GFF4280	0.57	+0.4
4,292,989	+		GFF4280	0.57	+0.3
4,292,989	+		GFF4280	0.57	-0.9
4,292,989	+		GFF4280	0.57	-0.2
4,292,989	+		GFF4280	0.57	-0.6
4,292,994	+		GFF4280	0.58	-0.3
4,292,994	+		GFF4280	0.58	-0.9
4,292,997	-		GFF4280	0.58	+0.4
4,292,997	-		GFF4280	0.58	+0.1
4,292,997	-		GFF4280	0.58	-0.4
4,292,997	-		GFF4280	0.58	+0.9
4,292,997	-		GFF4280	0.58	+0.3
4,293,002	-		GFF4280	0.58	-0.1
4,293,008	+		GFF4280	0.59	-0.8
4,293,045	+		GFF4280	0.62	-0.7
4,293,050	+		GFF4280	0.63	+0.2
4,293,053	-		GFF4280	0.63	+1.1
4,293,053	-		GFF4280	0.63	-1.4
4,293,057	+		GFF4280	0.63	+0.6
4,293,063	+		GFF4280	0.64	-1.4
4,293,063	-		GFF4280	0.64	-0.9
4,293,111	+		GFF4280	0.69	-0.9
4,293,119	-		GFF4280	0.69	+0.2
4,293,119	-		GFF4280	0.69	+0.5
4,293,119	-		GFF4280	0.69	-1.4
4,293,126	-		GFF4280	0.70	-0.7
4,293,127	-		GFF4280	0.70	-0.6
4,293,127	-		GFF4280	0.70	-1.6
4,293,127	-		GFF4280	0.70	+0.1
4,293,127	-		GFF4280	0.70	+0.2
4,293,127	-		GFF4280	0.70	-1.8
4,293,130	+		GFF4280	0.70	-0.3
4,293,148	-		GFF4280	0.72	-1.5
4,293,148	-		GFF4280	0.72	-0.3
4,293,150	+		GFF4280	0.72	-1.1
4,293,151	+		GFF4280	0.72	-0.2
4,293,151	+		GFF4280	0.72	-0.7
4,293,151	+		GFF4280	0.72	-0.2
4,293,151	+		GFF4280	0.72	+0.5
4,293,152	-		GFF4280	0.72	+0.2
4,293,159	-		GFF4280	0.73	+0.6
4,293,159	-		GFF4280	0.73	-1.5
4,293,159	-		GFF4280	0.73	+0.2
4,293,205	+		GFF4280	0.77	-1.0
4,293,209	-		GFF4280	0.78	-1.8
4,293,209	-		GFF4280	0.78	+0.7
4,293,210	-		GFF4280	0.78	-0.4
4,293,242	-		GFF4280	0.81	-0.2
4,293,262	-		GFF4280	0.83	+0.5
4,293,291	+		GFF4280	0.86	-0.6
4,293,291	+		GFF4280	0.86	-1.2
4,293,291	+		GFF4280	0.86	-1.3
4,293,291	+		GFF4280	0.86	-2.0
4,293,291	+		GFF4280	0.86	-0.8
4,293,291	+		GFF4280	0.86	+1.2
4,293,299	-		GFF4280	0.86	-1.1
4,293,299	-		GFF4280	0.86	+0.2
4,293,299	-		GFF4280	0.86	-0.7
4,293,299	-		GFF4280	0.86	-0.7
4,293,299	-		GFF4280	0.86	+0.3
4,293,299	-		GFF4280	0.86	+1.1
4,293,299	-		GFF4280	0.86	-0.9
4,293,310	+		GFF4280	0.87	-0.6
4,293,310	+		GFF4280	0.87	+0.6
4,293,310	+		GFF4280	0.87	-0.8
4,293,310	+		GFF4280	0.87	+0.5
4,293,310	+		GFF4280	0.87	-2.2
4,293,310	+		GFF4280	0.87	+0.2
4,293,310	+		GFF4280	0.87	+0.4
4,293,310	+		GFF4280	0.87	-0.1
4,293,310	+		GFF4280	0.87	+0.8
4,293,310	+		GFF4280	0.87	+0.0
4,293,310	+		GFF4280	0.87	+0.2
4,293,310	+		GFF4280	0.87	+0.4
4,293,310	+		GFF4280	0.87	-0.6
4,293,310	+		GFF4280	0.87	+0.4
4,293,310	+		GFF4280	0.87	+0.7
4,293,310	+		GFF4280	0.87	+0.3
4,293,310	+		GFF4280	0.87	-0.5
4,293,310	+		GFF4280	0.87	+0.4
4,293,310	+		GFF4280	0.87	+0.4
4,293,310	+		GFF4280	0.87	-0.7
4,293,310	+		GFF4280	0.87	+1.0
4,293,310	+		GFF4280	0.87	+0.1
4,293,310	+		GFF4280	0.87	-1.5
4,293,310	+		GFF4280	0.87	-0.5
4,293,310	+		GFF4280	0.87	+0.3
4,293,310	+		GFF4280	0.87	+0.0
4,293,310	+		GFF4280	0.87	+0.4
4,293,310	+		GFF4280	0.87	+0.1
4,293,318	-		GFF4280	0.88	-2.5
4,293,318	-		GFF4280	0.88	+0.2
4,293,318	-		GFF4280	0.88	+1.8
4,293,318	-		GFF4280	0.88	-0.2
4,293,318	-		GFF4280	0.88	-1.2
4,293,318	-		GFF4280	0.88	-0.3
4,293,318	-		GFF4280	0.88	-1.2
4,293,318	-		GFF4280	0.88	+0.3
4,293,318	-		GFF4280	0.88	-0.3
4,293,318	-		GFF4280	0.88	-0.8
4,293,318	-		GFF4280	0.88	-0.8
4,293,318	-		GFF4280	0.88	-0.3
4,293,318	-		GFF4280	0.88	-0.8
4,293,318	-		GFF4280	0.88	-0.0
4,293,318	-		GFF4280	0.88	+0.8
4,293,318	-		GFF4280	0.88	+1.0
4,293,318	-		GFF4280	0.88	+1.1
4,293,318	-		GFF4280	0.88	-1.0
4,293,318	-		GFF4280	0.88	-0.5
4,293,318	-		GFF4280	0.88	+0.1
4,293,318	-		GFF4280	0.88	+0.0
4,293,318	-		GFF4280	0.88	-1.8
4,293,318	-		GFF4280	0.88	+0.0
4,293,318	-		GFF4280	0.88	+0.3
4,293,323	-		GFF4280	0.89	-2.2
4,293,325	+		GFF4280	0.89	-0.1
4,293,325	+		GFF4280	0.89	-0.3
4,293,325	+		GFF4280	0.89	-0.9
4,293,325	+		GFF4280	0.89	+0.0
4,293,325	+		GFF4280	0.89	-0.2
4,293,325	+		GFF4280	0.89	+1.4
4,293,325	+		GFF4280	0.89	-1.0
4,293,325	+		GFF4280	0.89	-1.0
4,293,325	+		GFF4280	0.89	-1.0
4,293,325	+		GFF4280	0.89	-2.9
4,293,325	+		GFF4280	0.89	+0.7
4,293,325	+		GFF4280	0.89	+0.0
4,293,333	-		GFF4280	0.90	-0.0
4,293,333	-		GFF4280	0.90	+0.6
4,293,333	-		GFF4280	0.90	+0.0
4,293,333	-		GFF4280	0.90	+0.9
4,293,333	-		GFF4280	0.90	-0.3
4,293,333	-		GFF4280	0.90	-0.4
4,293,333	-		GFF4280	0.90	-2.5
4,293,333	-		GFF4280	0.90	-0.8
4,293,333	-		GFF4280	0.90	-0.6
4,293,333	-		GFF4280	0.90	-0.8
4,293,333	-		GFF4280	0.90	+1.0
4,293,343	-				+0.0
4,293,343	-				-0.5
4,293,348	-				+0.3
4,293,357	+				-1.2
4,293,392	+				+0.4
4,293,392	+				-0.5
4,293,392	+				+0.6
4,293,392	+				+1.6
4,293,392	+				+0.9
4,293,392	+				-1.7
4,293,392	+				-1.4
4,293,400	-				+1.2
4,293,400	-				-1.7
4,293,400	-				-0.9
4,293,400	-				+0.7
4,293,400	-				+0.2
4,293,400	-				-1.8
4,293,400	-				-1.4
4,293,400	-				+1.3
4,293,400	-				-0.1
4,293,400	-				+0.2
4,293,403	+				-0.7
4,293,403	+				+0.5
4,293,411	-				-0.4
4,293,411	-				-1.5
4,293,411	-				-0.3
4,293,411	-				-0.6
4,293,411	-				-0.6
4,293,418	+				+0.2
4,293,418	+				+0.9
4,293,418	+				-0.7
4,293,426	-				-0.4
4,293,426	-				-1.9
4,293,426	-				-0.5
4,293,426	-				-0.3
4,293,428	-				-0.3
4,293,435	-				-0.2
4,293,438	+				+1.3
4,293,438	+				-0.4
4,293,438	+				-0.6
4,293,438	+				+0.9
4,293,438	+				-1.4
4,293,438	+				+0.0
4,293,440	+				+1.1
4,293,446	-				-1.4
4,293,446	-				+0.1
4,293,446	-				+1.4
4,293,446	-				+1.0
4,293,446	-				+0.8
4,293,446	-				+0.5
4,293,446	-				-0.6
4,293,446	-				+0.3
4,293,446	-				+0.4
4,293,446	-				-1.1
4,293,446	-				-0.4
4,293,447	-				-0.2
4,293,448	-				-0.7
4,293,448	-				+2.0
4,293,450	+				-1.0
4,293,450	+				-1.6
4,293,450	+				+0.6
4,293,450	+				-0.2
4,293,453	-				-0.7
4,293,458	-				+0.1
4,293,458	-				+0.6
4,293,462	+				-0.0
4,293,462	+				+0.7
4,293,470	-				+0.5
4,293,486	+				-0.3
4,293,486	+				-1.0
4,293,486	+				-0.3
4,293,491	+				-0.6
4,293,507	+				-1.9
4,293,507	+				+0.1
4,293,507	+				-1.7
4,293,507	+				-0.9
4,293,515	-				-0.0
4,293,515	-				-0.8
4,293,515	-				-0.5
4,293,515	-				-0.4
4,293,515	-				-0.8
4,293,515	-				-0.1
4,293,550	-				-1.0
4,293,576	+				+1.0
4,293,578	+				+0.4
4,293,579	-				-0.1
4,293,584	-				-0.2
4,293,586	-				-1.2
4,293,586	-				-0.3
4,293,586	-				-2.2
4,293,586	-				-0.6
4,293,586	-				+0.0
4,293,597	+				+0.9
4,293,604	-				-0.2
4,293,610	-				-0.8
4,293,617	-		GFF4281	0.10	-0.5
4,293,626	-		GFF4281	0.11	-1.7
4,293,639	+		GFF4281	0.12	-2.2
4,293,639	+		GFF4281	0.12	-1.8
4,293,639	+		GFF4281	0.12	+1.0
4,293,639	+		GFF4281	0.12	+0.2
4,293,639	+		GFF4281	0.12	+2.0
4,293,646	+		GFF4281	0.13	+0.5
4,293,646	+		GFF4281	0.13	-1.4
4,293,647	-		GFF4281	0.13	-0.3
4,293,647	-		GFF4281	0.13	+0.7
4,293,647	-		GFF4281	0.13	-0.8
4,293,647	-		GFF4281	0.13	-0.3
4,293,647	-		GFF4281	0.13	+0.5
4,293,647	-		GFF4281	0.13	+1.1
4,293,654	-		GFF4281	0.14	-0.1
4,293,684	-		GFF4281	0.17	-1.6
4,293,711	-		GFF4281	0.19	-0.2
4,293,721	-		GFF4281	0.20	-0.7
4,293,729	+		GFF4281	0.21	-0.6
4,293,741	+		GFF4281	0.22	-2.1
4,293,749	+		GFF4281	0.23	-0.7
4,293,755	-		GFF4281	0.23	-0.3
4,293,755	-		GFF4281	0.23	-1.7
4,293,765	+		GFF4281	0.24	-0.6
4,293,774	+		GFF4281	0.25	+1.2
4,293,781	+		GFF4281	0.26	+0.4
4,293,781	+		GFF4281	0.26	-1.5
4,293,782	-		GFF4281	0.26	-0.4
4,293,787	-		GFF4281	0.26	-0.2
4,293,787	-		GFF4281	0.26	+0.2
4,293,798	-		GFF4281	0.27	-0.2
4,293,802	-		GFF4281	0.28	-0.6
4,293,815	+		GFF4281	0.29	-0.5
4,293,815	+		GFF4281	0.29	-0.1
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