Strain Fitness in Sphingobium sp. HT1-2 around GFF4232

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,248,325	-				+0.2
4,248,335	+				+0.4
4,248,336	+				+1.0
4,248,336	+				-0.1
4,248,373	+				-0.4
4,248,395	+				-1.8
4,248,417	+				-1.6
4,248,424	-				-1.6
4,248,461	-				+1.5
4,248,502	-		GFF4231	0.13	-2.3
4,248,518	-		GFF4231	0.14	+0.0
4,248,526	-		GFF4231	0.15	-0.0
4,248,531	-		GFF4231	0.16	-1.9
4,248,538	-		GFF4231	0.17	-0.1
4,248,626	-		GFF4231	0.26	-0.8
4,248,632	-		GFF4231	0.27	-0.8
4,248,634	+		GFF4231	0.27	-0.7
4,248,638	+		GFF4231	0.27	+0.3
4,248,639	-		GFF4231	0.27	+0.6
4,248,643	+		GFF4231	0.28	+1.1
4,248,648	+		GFF4231	0.28	+0.9
4,248,655	+		GFF4231	0.29	+0.0
4,248,656	-		GFF4231	0.29	-2.0
4,248,663	-		GFF4231	0.30	+0.1
4,248,663	-		GFF4231	0.30	-0.4
4,248,673	+		GFF4231	0.31	+1.1
4,248,698	-		GFF4231	0.34	-1.8
4,248,700	-		GFF4231	0.34	-0.0
4,248,727	-		GFF4231	0.37	+0.9
4,248,727	-		GFF4231	0.37	-0.0
4,248,743	-		GFF4231	0.38	-0.5
4,248,756	-		GFF4231	0.40	-1.5
4,248,758	-		GFF4231	0.40	-1.8
4,248,758	-		GFF4231	0.40	-0.3
4,248,758	-		GFF4231	0.40	-2.4
4,248,788	+		GFF4231	0.43	+0.2
4,248,788	+		GFF4231	0.43	+0.5
4,248,796	-		GFF4231	0.44	-1.7
4,248,796	-		GFF4231	0.44	+2.2
4,248,809	+		GFF4231	0.46	+0.4
4,248,815	+		GFF4231	0.46	+0.1
4,248,821	+		GFF4231	0.47	-1.3
4,248,829	-		GFF4231	0.48	-1.2
4,248,844	-		GFF4231	0.49	-0.8
4,248,852	+		GFF4231	0.50	-0.3
4,248,870	+		GFF4231	0.52	-1.5
4,248,889	-		GFF4231	0.54	-1.7
4,248,928	+		GFF4231	0.58	-2.4
4,248,928	+		GFF4231	0.58	-0.2
4,248,936	-		GFF4231	0.59	-0.9
4,248,957	+		GFF4231	0.61	-1.6
4,248,957	+		GFF4231	0.61	+0.0
4,248,965	-		GFF4231	0.62	-1.8
4,248,965	-		GFF4231	0.62	-0.7
4,248,965	-		GFF4231	0.62	-0.5
4,248,965	-		GFF4231	0.62	-0.6
4,248,965	-		GFF4231	0.62	+0.1
4,249,003	-		GFF4231	0.66	-1.5
4,249,011	-		GFF4231	0.67	-0.1
4,249,039	+		GFF4231	0.70	-0.4
4,249,148	-		GFF4231	0.82	-0.4
4,249,148	-		GFF4231	0.82	-0.3
4,249,160	+		GFF4231	0.83	-0.3
4,249,168	-		GFF4231	0.84	-0.7
4,249,168	-		GFF4231	0.84	-0.7
4,249,168	-		GFF4231	0.84	+1.4
4,249,168	-		GFF4231	0.84	-0.0
4,249,210	+		GFF4231	0.89	-0.7
4,249,238	-				-0.5
4,249,276	-				-1.9
4,249,326	-				-0.5
4,249,326	-				+0.7
4,249,367	-				+0.4
4,249,415	-		GFF4232	0.11	+1.5
4,249,515	+		GFF4232	0.23	-2.0
4,249,515	+		GFF4232	0.23	-0.1
4,249,523	-		GFF4232	0.24	+0.4
4,249,523	-		GFF4232	0.24	+1.4
4,249,527	+		GFF4232	0.24	-1.6
4,249,532	+		GFF4232	0.25	+0.3
4,249,535	-		GFF4232	0.25	+1.1
4,249,535	-		GFF4232	0.25	-1.7
4,249,546	-		GFF4232	0.26	-0.0
4,249,592	-		GFF4232	0.32	-0.9
4,249,642	+		GFF4232	0.38	+0.7
4,249,667	+		GFF4232	0.41	-0.6
4,249,774	+		GFF4232	0.53	-2.1
4,249,774	+		GFF4232	0.53	-0.3
4,249,774	+		GFF4232	0.53	-2.0
4,249,774	+		GFF4232	0.53	+1.0
4,249,774	+		GFF4232	0.53	-1.0
4,249,782	-		GFF4232	0.54	-2.3
4,249,796	+		GFF4232	0.56	-1.7
4,249,796	+		GFF4232	0.56	-0.6
4,249,796	+		GFF4232	0.56	-0.6
4,249,796	+		GFF4232	0.56	-0.1
4,249,804	-		GFF4232	0.57	+1.4
4,249,804	-		GFF4232	0.57	+0.9
4,249,811	-		GFF4232	0.58	-2.0
4,249,816	-		GFF4232	0.58	-0.9
4,249,830	+		GFF4232	0.60	+0.6
4,249,833	-		GFF4232	0.60	-1.0
4,249,843	+		GFF4232	0.62	-0.2
4,249,847	+		GFF4232	0.62	-1.2
4,249,867	+		GFF4232	0.65	-0.7
4,249,874	-		GFF4232	0.65	+1.5
4,249,876	-		GFF4232	0.66	+0.3
4,249,907	-		GFF4232	0.69	-0.1
4,249,907	-		GFF4232	0.69	+0.3
4,249,907	-		GFF4232	0.69	+0.6
4,249,908	-		GFF4232	0.69	-0.7
4,249,913	-		GFF4232	0.70	-1.3
4,249,931	+		GFF4232	0.72	-2.0
4,249,977	-		GFF4232	0.78	+0.9
4,250,005	+		GFF4232	0.81	-1.1
4,250,023	-		GFF4232	0.83	-0.3
4,250,049	+		GFF4232	0.86	-0.0
4,250,057	-		GFF4232	0.87	-1.6
4,250,081	-				-0.3
4,250,088	-				-0.7
4,250,102	+				-0.1
4,250,112	-				-0.2
4,250,121	-				-0.5
4,250,121	-				+0.0
4,250,143	+				-0.1
4,250,151	-				-0.5
4,250,165	-				-0.2
4,250,238	-				-1.1
4,250,306	-				-1.3
4,250,316	-				-1.3
4,250,376	-		GFF4233	0.15	+1.1
4,250,399	-		GFF4233	0.17	+0.6
4,250,399	-		GFF4233	0.17	-1.7
4,250,443	+		GFF4233	0.21	-1.0
4,250,446	-		GFF4233	0.21	+0.4
4,250,448	+		GFF4233	0.21	-1.1
4,250,474	-		GFF4233	0.24	+0.0
4,250,492	-		GFF4233	0.25	-2.2
4,250,494	-		GFF4233	0.25	-0.0
4,250,494	-		GFF4233	0.25	+0.0
4,250,507	-		GFF4233	0.27	+0.3
4,250,517	-		GFF4233	0.28	-2.1
4,250,517	-		GFF4233	0.28	-1.6
4,250,519	+		GFF4233	0.28	-0.1
4,250,519	+		GFF4233	0.28	+0.1
4,250,519	+		GFF4233	0.28	-1.4
4,250,519	+		GFF4233	0.28	-0.6
4,250,519	+		GFF4233	0.28	-1.7
4,250,519	+		GFF4233	0.28	+0.2
4,250,527	-		GFF4233	0.28	+0.8
4,250,590	-		GFF4233	0.34	-0.3
4,250,632	+		GFF4233	0.38	-1.7
4,250,633	-		GFF4233	0.38	-0.6
4,250,675	+		GFF4233	0.42	+0.7
4,250,678	-		GFF4233	0.42	-1.9
4,250,697	-		GFF4233	0.44	-0.6
4,250,701	-		GFF4233	0.44	+1.0
4,250,721	-		GFF4233	0.46	+0.3
4,250,751	-		GFF4233	0.49	-0.4
4,250,771	-		GFF4233	0.50	-0.3
4,250,797	-		GFF4233	0.53	-0.2
4,250,809	+		GFF4233	0.54	+0.5
4,250,814	+		GFF4233	0.54	+0.9
4,250,822	+		GFF4233	0.55	-1.0
4,250,822	-		GFF4233	0.55	+0.6
4,250,822	-		GFF4233	0.55	+0.6
4,250,833	-		GFF4233	0.56	+0.0
4,250,843	+		GFF4233	0.57	-1.8
4,250,843	+		GFF4233	0.57	-0.3
4,250,851	-		GFF4233	0.58	+0.5
4,250,855	+		GFF4233	0.58	+0.1
4,250,871	+		GFF4233	0.59	-0.3
4,250,871	+		GFF4233	0.59	-1.3
4,250,871	+		GFF4233	0.59	-0.8
4,250,871	+		GFF4233	0.59	+0.1
4,250,879	-		GFF4233	0.60	-0.3
4,250,879	-		GFF4233	0.60	+1.7
4,250,879	-		GFF4233	0.60	+1.2
4,250,927	-		GFF4233	0.65	+0.9
4,250,929	+		GFF4233	0.65	+0.6
4,250,932	-		GFF4233	0.65	+0.5
4,250,934	+		GFF4233	0.65	+0.6
4,250,934	+		GFF4233	0.65	+0.6
4,250,937	-		GFF4233	0.65	-0.7
4,250,937	-		GFF4233	0.65	-1.7
4,250,937	-		GFF4233	0.65	-1.2
4,250,939	+		GFF4233	0.66	-0.2
4,250,939	+		GFF4233	0.66	+0.5
4,250,942	-		GFF4233	0.66	-1.9
4,250,942	-		GFF4233	0.66	-1.8
4,250,942	-		GFF4233	0.66	-1.7
4,250,942	-		GFF4233	0.66	+0.4
4,250,947	-		GFF4233	0.66	-1.9
4,250,947	-		GFF4233	0.66	+0.3
4,250,952	-		GFF4233	0.67	+0.0
4,250,974	+		GFF4233	0.69	-2.0
4,250,994	+		GFF4233	0.71	-2.6
4,250,994	+		GFF4233	0.71	+0.0
4,250,994	+		GFF4233	0.71	-0.3
4,250,994	+		GFF4233	0.71	-1.4
4,250,994	+		GFF4233	0.71	+0.5
4,250,994	+		GFF4233	0.71	-0.6
4,250,994	+		GFF4233	0.71	-0.6
4,250,994	+		GFF4233	0.71	-2.0
4,250,994	+		GFF4233	0.71	-2.2
4,250,994	+		GFF4233	0.71	-1.5
4,250,994	+		GFF4233	0.71	-1.5
4,251,002	-		GFF4233	0.71	-0.6
4,251,002	-		GFF4233	0.71	-1.3
4,251,002	-		GFF4233	0.71	+0.3
4,251,002	-		GFF4233	0.71	-0.2
4,251,002	-		GFF4233	0.71	+1.5
4,251,002	-		GFF4233	0.71	-0.1
4,251,002	-		GFF4233	0.71	-0.5
4,251,002	-		GFF4233	0.71	+1.0
4,251,002	-		GFF4233	0.71	+0.6
4,251,023	-		GFF4233	0.73	+0.0
4,251,089	-		GFF4233	0.79	-1.1
4,251,100	-		GFF4233	0.80	+0.1
4,251,106	-		GFF4233	0.81	-0.5
4,251,116	-		GFF4233	0.82	-0.1
4,251,116	-		GFF4233	0.82	+0.0
4,251,116	-		GFF4233	0.82	+0.3
4,251,126	+		GFF4233	0.82	+0.6
4,251,144	-		GFF4233	0.84	-1.6
4,251,144	-		GFF4233	0.84	-0.7
4,251,144	-		GFF4233	0.84	-1.6
4,251,159	+		GFF4233	0.85	+1.1