Strain Fitness in Sphingobium sp. HT1-2 around GFF4224

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,241,072	-		GFF4223	0.36	+1.6
4,241,100	-		GFF4223	0.40	-0.6
4,241,107	-		GFF4223	0.41	+0.0
4,241,115	+		GFF4223	0.42	+0.6
4,241,129	-		GFF4223	0.43	-0.2
4,241,133	-		GFF4223	0.44	-0.3
4,241,144	+		GFF4223	0.45	+1.1
4,241,152	-		GFF4223	0.46	+1.3
4,241,154	+		GFF4223	0.46	-0.0
4,241,155	+		GFF4223	0.47	-0.7
4,241,155	+		GFF4223	0.47	-1.0
4,241,156	-		GFF4223	0.47	+0.1
4,241,175	+		GFF4223	0.49	-1.4
4,241,175	+		GFF4223	0.49	-0.3
4,241,183	+		GFF4223	0.50	-0.4
4,241,193	+		GFF4223	0.51	-1.8
4,241,206	-		GFF4223	0.53	-1.3
4,241,249	+		GFF4223	0.58	-0.1
4,241,249	+		GFF4223	0.58	+0.3
4,241,254	+		GFF4223	0.59	+0.4
4,241,257	-		GFF4223	0.59	+0.2
4,241,257	-		GFF4223	0.59	+0.6
4,241,257	-		GFF4223	0.59	+0.3
4,241,259	-		GFF4223	0.59	+0.6
4,241,267	+		GFF4223	0.60	+1.5
4,241,267	+		GFF4223	0.60	-2.3
4,241,267	+		GFF4223	0.60	-2.3
4,241,267	+		GFF4223	0.60	-2.3
4,241,275	-		GFF4223	0.61	-2.0
4,241,293	+		GFF4223	0.63	-0.1
4,241,301	+		GFF4223	0.64	+1.3
4,241,308	+		GFF4223	0.65	+0.5
4,241,308	+		GFF4223	0.65	-0.4
4,241,308	+		GFF4223	0.65	+0.2
4,241,308	+		GFF4223	0.65	-2.0
4,241,316	-		GFF4223	0.66	-0.4
4,241,316	-		GFF4223	0.66	-0.6
4,241,316	-		GFF4223	0.66	+0.7
4,241,316	-		GFF4223	0.66	+0.6
4,241,316	-		GFF4223	0.66	-0.7
4,241,316	-		GFF4223	0.66	-1.5
4,241,325	+		GFF4223	0.67	-0.3
4,241,332	+		GFF4223	0.68	+0.7
4,241,332	+		GFF4223	0.68	-1.7
4,241,332	+		GFF4223	0.68	+0.1
4,241,332	+		GFF4223	0.68	+0.5
4,241,332	+		GFF4223	0.68	-2.3
4,241,340	-		GFF4223	0.69	+0.2
4,241,365	+		GFF4223	0.72	+1.7
4,241,365	+		GFF4223	0.72	+1.2
4,241,372	+		GFF4223	0.73	+0.7
4,241,372	+		GFF4223	0.73	+0.1
4,241,373	-		GFF4223	0.73	+0.9
4,241,373	-		GFF4223	0.73	-0.9
4,241,373	-		GFF4223	0.73	+0.2
4,241,373	-		GFF4223	0.73	-0.8
4,241,374	+		GFF4223	0.73	-0.5
4,241,380	-		GFF4223	0.74	+1.2
4,241,380	-		GFF4223	0.74	-0.7
4,241,380	-		GFF4223	0.74	-0.9
4,241,380	-		GFF4223	0.74	-0.2
4,241,380	-		GFF4223	0.74	+0.2
4,241,406	+		GFF4223	0.77	-1.1
4,241,407	-		GFF4223	0.77	-0.5
4,241,428	+		GFF4223	0.80	-2.0
4,241,428	+		GFF4223	0.80	+0.1
4,241,428	+		GFF4223	0.80	-2.3
4,241,449	+		GFF4223	0.82	-0.8
4,241,465	-		GFF4223	0.84	-2.1
4,241,489	+		GFF4223	0.87	-0.2
4,241,498	-		GFF4223	0.88	-1.3
4,241,502	+		GFF4223	0.89	-2.3
4,241,502	-		GFF4223	0.89	-0.0
4,241,524	+				-0.2
4,241,527	-				-1.6
4,241,542	-				+0.7
4,241,553	-				-0.6
4,241,554	+				+1.1
4,241,554	-				+0.7
4,241,561	+				+0.4
4,241,612	-				-0.6
4,241,648	+				+0.5
4,241,648	+				+0.0
4,241,648	+				-0.8
4,241,648	+				-1.1
4,241,648	+				+1.0
4,241,648	+				-2.6
4,241,648	+				-0.4
4,241,648	+				+0.8
4,241,651	-				-0.2
4,241,651	-				+0.6
4,241,656	-				-0.2
4,241,656	-				+0.4
4,241,656	-				-1.0
4,241,656	-				-3.0
4,241,663	+				-0.0
4,241,671	+				+0.6
4,241,671	-				+0.1
4,241,678	-				+1.0
4,241,730	+				-0.6
4,241,730	+				+0.0
4,241,730	+				-0.1
4,241,730	+				-0.6
4,241,738	-				+0.1
4,241,738	-				+1.8
4,241,738	-				-0.3
4,241,743	-				-2.7
4,241,750	+				-0.9
4,241,750	+				+1.0
4,241,763	-				+0.3
4,241,764	+				-2.0
4,241,764	+				+0.8
4,241,766	+				+0.7
4,241,809	+				-0.8
4,241,809	+				+1.5
4,241,817	-				-1.4
4,241,817	-				+0.1
4,241,819	-				-2.3
4,241,828	-				-0.7
4,241,847	+				-1.1
4,241,854	-				+0.8
4,241,856	-				+0.1
4,241,898	+				+0.6
4,241,944	-				-0.5
4,241,986	-				-1.0
4,242,034	+				-0.2
4,242,042	-				-1.7
4,242,066	-				-1.0
4,242,067	+				-1.3
4,242,071	+				+0.8
4,242,073	+				-0.4
4,242,073	+				+0.0
4,242,081	+				+0.1
4,242,081	-				-1.4
4,242,088	-				-1.7
4,242,096	+		GFF4224	0.10	-0.9
4,242,096	+		GFF4224	0.10	+1.2
4,242,096	+		GFF4224	0.10	+0.3
4,242,104	-		GFF4224	0.13	-2.3
4,242,119	-		GFF4224	0.19	+1.5
4,242,119	-		GFF4224	0.19	-0.1
4,242,119	-		GFF4224	0.19	+1.1
4,242,124	+		GFF4224	0.21	+0.5
4,242,124	+		GFF4224	0.21	+0.2
4,242,124	+		GFF4224	0.21	-0.9
4,242,126	+		GFF4224	0.22	+0.0
4,242,132	-		GFF4224	0.24	-1.0
4,242,132	-		GFF4224	0.24	+1.3
4,242,132	-		GFF4224	0.24	-1.0
4,242,148	+		GFF4224	0.30	-1.8
4,242,156	-		GFF4224	0.33	-1.0
4,242,156	-		GFF4224	0.33	-1.0
4,242,156	-		GFF4224	0.33	+1.3
4,242,156	-		GFF4224	0.33	-0.7
4,242,159	+		GFF4224	0.34	+2.1
4,242,166	-		GFF4224	0.37	+0.4
4,242,166	-		GFF4224	0.37	+0.9
4,242,167	-		GFF4224	0.37	-0.0
4,242,167	-		GFF4224	0.37	+0.4
4,242,172	-		GFF4224	0.39	-0.8
4,242,189	+		GFF4224	0.45	-0.2
4,242,190	-		GFF4224	0.46	-1.0
4,242,192	-		GFF4224	0.47	+1.3
4,242,211	-		GFF4224	0.54	+0.9
4,242,221	-		GFF4224	0.58	-1.9
4,242,231	+		GFF4224	0.61	+0.2
4,242,231	+		GFF4224	0.61	-1.4
4,242,232	+		GFF4224	0.62	-1.8
4,242,232	+		GFF4224	0.62	-0.9
4,242,232	+		GFF4224	0.62	+0.1
4,242,232	+		GFF4224	0.62	-0.4
4,242,232	+		GFF4224	0.62	-0.2
4,242,232	+		GFF4224	0.62	+0.3
4,242,232	+		GFF4224	0.62	-1.0
4,242,232	+		GFF4224	0.62	-0.9
4,242,232	+		GFF4224	0.62	-0.7
4,242,232	+		GFF4224	0.62	+0.1
4,242,232	+		GFF4224	0.62	+0.4
4,242,239	-		GFF4224	0.64	-0.4
4,242,240	-		GFF4224	0.65	-0.9
4,242,240	-		GFF4224	0.65	+0.7
4,242,240	-		GFF4224	0.65	-1.3
4,242,240	-		GFF4224	0.65	-0.3
4,242,240	-		GFF4224	0.65	-0.6
4,242,240	-		GFF4224	0.65	+0.7
4,242,240	-		GFF4224	0.65	+0.5
4,242,240	-		GFF4224	0.65	+0.0
4,242,240	-		GFF4224	0.65	+0.3
4,242,240	-		GFF4224	0.65	-0.8
4,242,240	-		GFF4224	0.65	-1.2
4,242,242	+		GFF4224	0.66	-1.0
4,242,242	+		GFF4224	0.66	-0.9
4,242,242	+		GFF4224	0.66	+1.0
4,242,242	+		GFF4224	0.66	-1.3
4,242,242	+		GFF4224	0.66	-2.0
4,242,242	+		GFF4224	0.66	-2.0
4,242,242	+		GFF4224	0.66	+0.0
4,242,242	+		GFF4224	0.66	-0.4
4,242,242	+		GFF4224	0.66	+0.9
4,242,242	+		GFF4224	0.66	+0.9
4,242,242	+		GFF4224	0.66	+1.3
4,242,245	-		GFF4224	0.67	-1.3
4,242,250	-		GFF4224	0.69	+1.0
4,242,250	-		GFF4224	0.69	-1.2
4,242,250	-		GFF4224	0.69	+0.7
4,242,250	-		GFF4224	0.69	+0.0
4,242,250	-		GFF4224	0.69	-0.2
4,242,250	-		GFF4224	0.69	+0.7
4,242,250	-		GFF4224	0.69	+0.6
4,242,250	-		GFF4224	0.69	-0.7
4,242,256	+		GFF4224	0.71	-1.7
4,242,256	+		GFF4224	0.71	-1.0
4,242,260	-		GFF4224	0.72	-1.5
4,242,260	-		GFF4224	0.72	+0.4
4,242,261	+		GFF4224	0.73	-1.0
4,242,264	-		GFF4224	0.74	+0.6
4,242,264	-		GFF4224	0.74	-0.3
4,242,264	-		GFF4224	0.74	-1.0
4,242,264	-		GFF4224	0.74	-0.9
4,242,264	-		GFF4224	0.74	-0.8
4,242,264	-		GFF4224	0.74	+0.1
4,242,264	-		GFF4224	0.74	-1.6
4,242,266	+		GFF4224	0.75	+0.4
4,242,266	+		GFF4224	0.75	-1.4
4,242,266	+		GFF4224	0.75	+0.7
4,242,269	-		GFF4224	0.76	+1.4
4,242,274	-		GFF4224	0.78	+0.1
4,242,274	-		GFF4224	0.78	-2.3
4,242,274	-		GFF4224	0.78	-0.8
4,242,275	+		GFF4224	0.78	+0.5
4,242,275	+		GFF4224	0.78	-2.0
4,242,276	+		GFF4224	0.78	-1.9
4,242,276	+		GFF4224	0.78	+0.3
4,242,279	-		GFF4224	0.80	-0.1
4,242,283	+		GFF4224	0.81	-0.1
4,242,283	+		GFF4224	0.81	-1.1
4,242,283	-		GFF4224	0.81	-0.8
4,242,289	+		GFF4224	0.83	-1.0
4,242,291	-		GFF4224	0.84	+1.4
4,242,294	+		GFF4224	0.85	+0.6
4,242,294	+		GFF4224	0.85	+1.5
4,242,296	-		GFF4224	0.86	-0.2
4,242,296	-		GFF4224	0.86	-0.6
4,242,296	-		GFF4224	0.86	-0.7
4,242,301	+		GFF4224	0.88	+0.0
4,242,306	+				-1.7
4,242,309	-				-1.7
4,242,309	-				+0.1
4,242,321	+				+1.3
4,242,327	+				-0.7
4,242,341	+				-2.0
4,242,349	-				+0.2
4,242,355	-				+0.1
4,242,360	+				-0.8
4,242,360	+				-1.3
4,242,360	-				-1.6
4,242,360	-				-0.4
4,242,360	-				-0.9
4,242,360	-				-1.2
4,242,365	-				-1.0
4,242,365	-				+0.7
4,242,368	-				-0.2
4,242,372	+				-2.0
4,242,419	-				-0.5
4,242,419	-				-1.5
4,242,458	+				-1.2
4,242,466	-				-0.2
4,242,471	-				-1.9
4,242,473	-				-1.7
4,242,505	-				+0.3
4,242,507	+				+0.5
4,242,515	-				-0.7
4,242,558	+		GFF4225	0.38	-0.7
4,242,578	+		GFF4225	0.53	-1.6
4,242,596	-		GFF4225	0.66	+0.1
4,242,604	-		GFF4225	0.72	-1.5
4,242,615	+		GFF4225	0.80	+1.1
4,242,615	+		GFF4225	0.80	+0.3
4,242,623	-		GFF4225	0.86	+0.3
4,242,623	-		GFF4225	0.86	-1.0
4,242,630	+				+0.1
4,242,631	-				+1.1
4,242,649	+				-0.0
4,242,649	+				-0.5
4,242,660	+				-2.0
4,242,707	+				+0.2
4,242,719	+				+0.4
4,242,719	+				-0.7
4,242,768	-				-1.3
4,242,771	+				-2.4
4,242,776	+				-0.5
4,242,784	-				+0.3
4,242,788	+				-1.3
4,242,788	-				-0.8
4,242,796	-				+0.0
4,242,796	-				-0.7
4,242,796	-				+1.1
4,242,796	-				+0.9
4,242,798	+				-0.3
4,242,798	+				-0.5
4,242,803	+				-0.3
4,242,806	-				-0.5
4,242,806	-				+0.7
4,242,806	-				-0.7
4,242,808	+				-0.4
4,242,856	+		GFF4226	0.19	+0.1
4,242,856	+		GFF4226	0.19	-0.2
4,242,856	+		GFF4226	0.19	-0.6
4,242,864	-		GFF4226	0.20	-0.1
4,242,864	-		GFF4226	0.20	+0.4
4,242,873	-		GFF4226	0.23	-1.5
4,242,874	+		GFF4226	0.23	+0.0
4,242,875	+		GFF4226	0.23	+0.3
4,242,897	-		GFF4226	0.28	-1.0
4,242,903	+		GFF4226	0.30	-0.1
4,242,903	+		GFF4226	0.30	-2.0
4,242,903	+		GFF4226	0.30	-0.3
4,242,908	+		GFF4226	0.31	-0.1
4,242,920	-		GFF4226	0.34	-0.7
4,242,940	+		GFF4226	0.38	+0.4
4,242,948	-		GFF4226	0.40	-0.2
4,242,948	-		GFF4226	0.40	+0.9
4,242,950	-		GFF4226	0.41	-1.5
4,242,953	-		GFF4226	0.41	-1.0
4,242,957	+		GFF4226	0.42	-0.5
4,242,965	-		GFF4226	0.44	-1.3
4,242,965	-		GFF4226	0.44	-0.2
4,242,967	+		GFF4226	0.45	+0.4
4,242,975	-		GFF4226	0.46	-1.1
4,242,975	-		GFF4226	0.46	-1.5
4,242,975	-		GFF4226	0.46	-1.6
4,242,992	-		GFF4226	0.50	+0.3
4,242,992	-		GFF4226	0.50	+0.4
4,242,997	-		GFF4226	0.52	-0.5
4,243,021	+		GFF4226	0.57	-2.3
4,243,029	-		GFF4226	0.59	-0.7
4,243,050	+		GFF4226	0.64	+1.4
4,243,055	+		GFF4226	0.65	+0.2
4,243,058	-		GFF4226	0.66	-0.2
4,243,065	-		GFF4226	0.68	-0.1
4,243,068	+		GFF4226	0.68	-0.1
4,243,068	+		GFF4226	0.68	+0.5
4,243,068	+		GFF4226	0.68	+0.4
4,243,071	-		GFF4226	0.69	-0.2
4,243,076	-		GFF4226	0.70	-0.6
4,243,076	-		GFF4226	0.70	+1.1
4,243,076	-		GFF4226	0.70	+0.1
4,243,076	-		GFF4226	0.70	-1.4
4,243,076	-		GFF4226	0.70	+0.7
4,243,076	-		GFF4226	0.70	-0.3
4,243,086	+		GFF4226	0.73	+0.3
4,243,096	+		GFF4226	0.75	-1.5
4,243,128	-		GFF4226	0.82	-2.5
4,243,135	+		GFF4226	0.84	-1.3
4,243,142	+		GFF4226	0.86	-0.0
4,243,142	+		GFF4226	0.86	-1.6
4,243,148	+		GFF4226	0.87	-0.0
4,243,156	+		GFF4226	0.89	+0.1
4,243,157	-		GFF4226	0.89	+1.2
4,243,158	+		GFF4226	0.89	+0.4
4,243,164	-				-0.5
4,243,166	-				-1.6
4,243,188	-				-1.6
4,243,192	+				-2.7
4,243,192	+				-1.2
4,243,192	+				+0.0
4,243,192	+				-1.0
4,243,192	+				-0.1
4,243,192	+				+0.3
4,243,192	+				-1.5
4,243,197	+				+1.8
4,243,197	+				-0.1
4,243,200	-				-0.1
4,243,200	-				-0.8
4,243,200	-				+0.5
4,243,200	-				+0.1
4,243,205	-				-2.2
4,243,205	-				+0.1
4,243,207	+				+0.8
4,243,207	+				+0.1
4,243,215	-				-0.9
4,243,221	-				+0.3
4,243,236	-				-0.5
4,243,236	-				+1.1
4,243,241	-				+1.1
4,243,247	+				+1.0
4,243,300	+				+0.1
4,243,307	+				-0.1
4,243,314	+				+0.3
4,243,314	+				-1.3
4,243,314	+				+0.6
4,243,314	+				+0.9
4,243,314	+				-0.3
4,243,314	+				-3.0
4,243,314	+				+0.5
4,243,314	+				+0.9
4,243,314	+				-0.5
4,243,314	+				-0.1
4,243,314	+				+0.5
4,243,314	+				-1.6
4,243,314	+				-1.3
4,243,314	+				+0.2
4,243,322	-				-0.8
4,243,322	-				+1.5
4,243,322	-				-0.7
4,243,322	-				-1.8
4,243,322	-				-2.1
4,243,322	-				-0.3
4,243,322	-				-1.7
4,243,322	-				-0.8
4,243,322	-				+0.4
4,243,322	-				-1.3
4,243,322	-				-0.8
4,243,322	-				+0.6
4,243,322	-				+0.5