Strain Fitness in Sphingobium sp. HT1-2 around GFF4223

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,239,776	+				+0.3
4,239,785	+				-0.3
4,239,821	+				-0.4
4,239,821	-				-0.1
4,239,832	+				+0.2
4,239,832	-				-0.4
4,239,834	+				+0.6
4,239,836	+				-0.1
4,239,836	+				+0.7
4,239,837	-				-0.3
4,239,840	-				-1.2
4,239,840	-				-0.8
4,239,850	-				+1.7
4,239,850	-				-1.4
4,239,885	-				+0.1
4,239,889	+		GFF4222	0.10	-0.4
4,239,921	-		GFF4222	0.36	-0.1
4,239,921	-		GFF4222	0.36	+1.0
4,239,924	+		GFF4222	0.38	-0.6
4,239,925	+		GFF4222	0.39	-2.5
4,239,932	-		GFF4222	0.44	+0.1
4,239,933	-		GFF4222	0.45	+1.4
4,239,935	+		GFF4222	0.47	+0.0
4,239,935	+		GFF4222	0.47	-0.7
4,239,943	-		GFF4222	0.53	+0.1
4,239,963	+		GFF4222	0.69	+1.3
4,239,967	+		GFF4222	0.72	-0.7
4,239,971	-		GFF4222	0.75	-0.1
4,239,973	+		GFF4222	0.77	-2.3
4,239,973	+		GFF4222	0.77	+0.3
4,239,973	+		GFF4222	0.77	+0.4
4,239,980	-		GFF4222	0.83	-0.4
4,239,981	-		GFF4222	0.83	-0.9
4,239,985	+		GFF4222	0.87	-1.1
4,240,014	+				-1.6
4,240,017	+				+0.4
4,240,022	+				-0.7
4,240,022	-				-2.3
4,240,025	-				-0.8
4,240,025	-				-0.2
4,240,025	-				-0.4
4,240,064	+				-0.7
4,240,064	+				-0.7
4,240,072	-				+1.1
4,240,089	-				+0.3
4,240,091	+				-1.4
4,240,099	-				+1.2
4,240,099	-				+0.7
4,240,123	-				-1.7
4,240,123	-				+0.9
4,240,123	-				-2.2
4,240,123	-				-1.7
4,240,129	-				+0.8
4,240,129	-				-1.4
4,240,139	+				-1.7
4,240,149	-				-0.4
4,240,154	+				-0.8
4,240,154	+				-0.3
4,240,159	+				+0.2
4,240,167	-				-0.3
4,240,167	-				+0.5
4,240,172	-				+0.0
4,240,217	-				-0.4
4,240,238	+				-0.3
4,240,239	+				-0.7
4,240,245	+				+0.3
4,240,245	+				-0.3
4,240,245	+				-0.2
4,240,248	-				-0.1
4,240,253	-				+0.1
4,240,253	-				-0.4
4,240,253	-				+0.0
4,240,253	-				-1.7
4,240,253	-				-1.4
4,240,253	-				+0.5
4,240,253	-				+0.8
4,240,253	-				-0.3
4,240,253	-				+0.4
4,240,263	+				+1.0
4,240,263	-				-1.7
4,240,264	+				-0.1
4,240,272	-				-0.1
4,240,276	-				-1.3
4,240,299	+				+1.1
4,240,307	-				-0.3
4,240,315	-				-0.1
4,240,316	+				-0.1
4,240,329	+				-0.6
4,240,329	+				-0.7
4,240,329	+				-1.0
4,240,334	+				-0.6
4,240,334	+				+0.0
4,240,337	-				+0.6
4,240,337	-				-0.7
4,240,337	-				-0.1
4,240,351	-				-0.6
4,240,359	+				+0.6
4,240,359	+				-0.4
4,240,360	-				-1.6
4,240,362	+				+0.3
4,240,367	-				+0.7
4,240,367	-				+0.1
4,240,367	-				+0.1
4,240,367	-				-0.9
4,240,369	+				-0.3
4,240,375	-				-1.2
4,240,399	-				+0.6
4,240,409	-				+0.4
4,240,409	-				-1.3
4,240,409	-				-0.4
4,240,421	+				-0.9
4,240,422	-				-1.4
4,240,432	+				-1.4
4,240,437	+				-0.7
4,240,491	+				-0.7
4,240,504	-				+0.2
4,240,514	-				-0.2
4,240,529	-				-0.4
4,240,531	-				+0.9
4,240,540	+				+0.4
4,240,556	-				+0.0
4,240,692	+				-0.5
4,240,720	-				-0.7
4,240,752	-				+0.1
4,240,755	+				-1.1
4,240,759	-				-0.0
4,240,771	-				+0.1
4,240,778	-				-2.3
4,240,792	-				-1.7
4,240,794	-				+1.2
4,240,820	-				-0.5
4,240,839	-				-0.9
4,240,864	-		GFF4223	0.11	-0.5
4,240,881	-		GFF4223	0.13	+0.5
4,240,881	-		GFF4223	0.13	-1.7
4,240,881	-		GFF4223	0.13	-0.8
4,240,887	-		GFF4223	0.14	-3.4
4,240,889	-		GFF4223	0.14	-1.4
4,240,892	-		GFF4223	0.14	-1.8
4,240,894	+		GFF4223	0.15	-0.0
4,240,894	+		GFF4223	0.15	+0.8
4,240,894	+		GFF4223	0.15	+0.6
4,240,894	+		GFF4223	0.15	-1.0
4,240,894	+		GFF4223	0.15	-0.2
4,240,894	+		GFF4223	0.15	+0.2
4,240,894	+		GFF4223	0.15	+0.0
4,240,894	+		GFF4223	0.15	+0.9
4,240,902	+		GFF4223	0.16	-0.1
4,240,902	-		GFF4223	0.16	+0.5
4,240,902	-		GFF4223	0.16	+1.3
4,240,902	-		GFF4223	0.16	-0.2
4,240,902	-		GFF4223	0.16	+0.0
4,240,902	-		GFF4223	0.16	+1.4
4,240,907	+		GFF4223	0.16	-0.5
4,240,912	+		GFF4223	0.17	-0.0
4,240,932	+		GFF4223	0.19	-0.3
4,240,932	-		GFF4223	0.19	+1.2
4,240,939	+		GFF4223	0.20	-1.1
4,240,942	-		GFF4223	0.21	+0.7
4,240,942	-		GFF4223	0.21	-1.0
4,240,947	-		GFF4223	0.21	-0.3
4,240,959	+		GFF4223	0.23	-1.7
4,240,959	+		GFF4223	0.23	-0.6
4,240,967	-		GFF4223	0.24	+0.1
4,240,967	-		GFF4223	0.24	-0.1
4,240,981	+		GFF4223	0.25	-0.5
4,240,999	-		GFF4223	0.27	-1.0
4,240,999	-		GFF4223	0.27	+0.1
4,241,005	+		GFF4223	0.28	-2.7
4,241,013	-		GFF4223	0.29	-2.3
4,241,014	+		GFF4223	0.29	-1.5
4,241,014	+		GFF4223	0.29	-0.4
4,241,022	+		GFF4223	0.30	-0.8
4,241,024	+		GFF4223	0.31	-1.3
4,241,032	-		GFF4223	0.32	-0.3
4,241,041	+		GFF4223	0.33	-1.8
4,241,049	+		GFF4223	0.34	-0.1
4,241,049	+		GFF4223	0.34	+0.1
4,241,049	-		GFF4223	0.34	-1.4
4,241,049	-		GFF4223	0.34	+0.5
4,241,054	+		GFF4223	0.34	-1.0
4,241,057	-		GFF4223	0.35	+0.5
4,241,057	-		GFF4223	0.35	+0.2
4,241,072	-		GFF4223	0.36	+1.6
4,241,100	-		GFF4223	0.40	-0.6
4,241,107	-		GFF4223	0.41	+0.0
4,241,115	+		GFF4223	0.42	+0.6
4,241,129	-		GFF4223	0.43	-0.2
4,241,133	-		GFF4223	0.44	-0.3
4,241,144	+		GFF4223	0.45	+1.1
4,241,152	-		GFF4223	0.46	+1.3
4,241,154	+		GFF4223	0.46	-0.0
4,241,155	+		GFF4223	0.47	-0.7
4,241,155	+		GFF4223	0.47	-1.0
4,241,156	-		GFF4223	0.47	+0.1
4,241,175	+		GFF4223	0.49	-1.4
4,241,175	+		GFF4223	0.49	-0.3
4,241,183	+		GFF4223	0.50	-0.4
4,241,193	+		GFF4223	0.51	-1.8
4,241,206	-		GFF4223	0.53	-1.3
4,241,249	+		GFF4223	0.58	-0.1
4,241,249	+		GFF4223	0.58	+0.3
4,241,254	+		GFF4223	0.59	+0.4
4,241,257	-		GFF4223	0.59	+0.2
4,241,257	-		GFF4223	0.59	+0.6
4,241,257	-		GFF4223	0.59	+0.3
4,241,259	-		GFF4223	0.59	+0.6
4,241,267	+		GFF4223	0.60	+1.5
4,241,267	+		GFF4223	0.60	-2.3
4,241,267	+		GFF4223	0.60	-2.3
4,241,267	+		GFF4223	0.60	-2.3
4,241,275	-		GFF4223	0.61	-2.0
4,241,293	+		GFF4223	0.63	-0.1
4,241,301	+		GFF4223	0.64	+1.3
4,241,308	+		GFF4223	0.65	+0.5
4,241,308	+		GFF4223	0.65	-0.4
4,241,308	+		GFF4223	0.65	+0.2
4,241,308	+		GFF4223	0.65	-2.0
4,241,316	-		GFF4223	0.66	-0.4
4,241,316	-		GFF4223	0.66	-0.6
4,241,316	-		GFF4223	0.66	+0.7
4,241,316	-		GFF4223	0.66	+0.6
4,241,316	-		GFF4223	0.66	-0.7
4,241,316	-		GFF4223	0.66	-1.5
4,241,325	+		GFF4223	0.67	-0.3
4,241,332	+		GFF4223	0.68	+0.7
4,241,332	+		GFF4223	0.68	-1.7
4,241,332	+		GFF4223	0.68	+0.1
4,241,332	+		GFF4223	0.68	+0.5
4,241,332	+		GFF4223	0.68	-2.3
4,241,340	-		GFF4223	0.69	+0.2
4,241,365	+		GFF4223	0.72	+1.7
4,241,365	+		GFF4223	0.72	+1.2
4,241,372	+		GFF4223	0.73	+0.7
4,241,372	+		GFF4223	0.73	+0.1
4,241,373	-		GFF4223	0.73	+0.9
4,241,373	-		GFF4223	0.73	-0.9
4,241,373	-		GFF4223	0.73	+0.2
4,241,373	-		GFF4223	0.73	-0.8
4,241,374	+		GFF4223	0.73	-0.5
4,241,380	-		GFF4223	0.74	+1.2
4,241,380	-		GFF4223	0.74	-0.7
4,241,380	-		GFF4223	0.74	-0.9
4,241,380	-		GFF4223	0.74	-0.2
4,241,380	-		GFF4223	0.74	+0.2
4,241,406	+		GFF4223	0.77	-1.1
4,241,407	-		GFF4223	0.77	-0.5
4,241,428	+		GFF4223	0.80	-2.0
4,241,428	+		GFF4223	0.80	+0.1
4,241,428	+		GFF4223	0.80	-2.3
4,241,449	+		GFF4223	0.82	-0.8
4,241,465	-		GFF4223	0.84	-2.1
4,241,489	+		GFF4223	0.87	-0.2
4,241,498	-		GFF4223	0.88	-1.3
4,241,502	+		GFF4223	0.89	-2.3
4,241,502	-		GFF4223	0.89	-0.0
4,241,524	+				-0.2
4,241,527	-				-1.6
4,241,542	-				+0.7
4,241,553	-				-0.6
4,241,554	+				+1.1
4,241,554	-				+0.7
4,241,561	+				+0.4
4,241,612	-				-0.6
4,241,648	+				+0.5
4,241,648	+				+0.0
4,241,648	+				-0.8
4,241,648	+				-1.1
4,241,648	+				+1.0
4,241,648	+				-2.6
4,241,648	+				-0.4
4,241,648	+				+0.8
4,241,651	-				-0.2
4,241,651	-				+0.6
4,241,656	-				-0.2
4,241,656	-				+0.4
4,241,656	-				-1.0
4,241,656	-				-3.0
4,241,663	+				-0.0
4,241,671	+				+0.6
4,241,671	-				+0.1
4,241,678	-				+1.0
4,241,730	+				-0.6
4,241,730	+				+0.0
4,241,730	+				-0.1
4,241,730	+				-0.6
4,241,738	-				+0.1
4,241,738	-				+1.8
4,241,738	-				-0.3
4,241,743	-				-2.7
4,241,750	+				-0.9
4,241,750	+				+1.0
4,241,763	-				+0.3
4,241,764	+				-2.0
4,241,764	+				+0.8
4,241,766	+				+0.7
4,241,809	+				-0.8
4,241,809	+				+1.5
4,241,817	-				-1.4
4,241,817	-				+0.1
4,241,819	-				-2.3
4,241,828	-				-0.7
4,241,847	+				-1.1
4,241,854	-				+0.8
4,241,856	-				+0.1
4,241,898	+				+0.6
4,241,944	-				-0.5
4,241,986	-				-1.0
4,242,034	+				-0.2
4,242,042	-				-1.7
4,242,066	-				-1.0
4,242,067	+				-1.3
4,242,071	+				+0.8
4,242,073	+				-0.4
4,242,073	+				+0.0
4,242,081	+				+0.1
4,242,081	-				-1.4
4,242,088	-				-1.7
4,242,096	+		GFF4224	0.10	-0.9
4,242,096	+		GFF4224	0.10	+1.2
4,242,096	+		GFF4224	0.10	+0.3
4,242,104	-		GFF4224	0.13	-2.3
4,242,119	-		GFF4224	0.19	+1.5
4,242,119	-		GFF4224	0.19	-0.1
4,242,119	-		GFF4224	0.19	+1.1
4,242,124	+		GFF4224	0.21	+0.5
4,242,124	+		GFF4224	0.21	+0.2
4,242,124	+		GFF4224	0.21	-0.9
4,242,126	+		GFF4224	0.22	+0.0
4,242,132	-		GFF4224	0.24	-1.0
4,242,132	-		GFF4224	0.24	+1.3
4,242,132	-		GFF4224	0.24	-1.0
4,242,148	+		GFF4224	0.30	-1.8
4,242,156	-		GFF4224	0.33	-1.0
4,242,156	-		GFF4224	0.33	-1.0
4,242,156	-		GFF4224	0.33	+1.3
4,242,156	-		GFF4224	0.33	-0.7
4,242,159	+		GFF4224	0.34	+2.1
4,242,166	-		GFF4224	0.37	+0.4
4,242,166	-		GFF4224	0.37	+0.9
4,242,167	-		GFF4224	0.37	-0.0
4,242,167	-		GFF4224	0.37	+0.4
4,242,172	-		GFF4224	0.39	-0.8
4,242,189	+		GFF4224	0.45	-0.2
4,242,190	-		GFF4224	0.46	-1.0
4,242,192	-		GFF4224	0.47	+1.3
4,242,211	-		GFF4224	0.54	+0.9
4,242,221	-		GFF4224	0.58	-1.9
4,242,231	+		GFF4224	0.61	+0.2
4,242,231	+		GFF4224	0.61	-1.4
4,242,232	+		GFF4224	0.62	-1.8
4,242,232	+		GFF4224	0.62	-0.9
4,242,232	+		GFF4224	0.62	+0.1
4,242,232	+		GFF4224	0.62	-0.4
4,242,232	+		GFF4224	0.62	-0.2
4,242,232	+		GFF4224	0.62	+0.3
4,242,232	+		GFF4224	0.62	-1.0
4,242,232	+		GFF4224	0.62	-0.9
4,242,232	+		GFF4224	0.62	-0.7
4,242,232	+		GFF4224	0.62	+0.1
4,242,232	+		GFF4224	0.62	+0.4
4,242,239	-		GFF4224	0.64	-0.4
4,242,240	-		GFF4224	0.65	-0.9
4,242,240	-		GFF4224	0.65	+0.7
4,242,240	-		GFF4224	0.65	-1.3
4,242,240	-		GFF4224	0.65	-0.3
4,242,240	-		GFF4224	0.65	-0.6
4,242,240	-		GFF4224	0.65	+0.7
4,242,240	-		GFF4224	0.65	+0.5
4,242,240	-		GFF4224	0.65	+0.0
4,242,240	-		GFF4224	0.65	+0.3
4,242,240	-		GFF4224	0.65	-0.8
4,242,240	-		GFF4224	0.65	-1.2
4,242,242	+		GFF4224	0.66	-1.0
4,242,242	+		GFF4224	0.66	-0.9
4,242,242	+		GFF4224	0.66	+1.0
4,242,242	+		GFF4224	0.66	-1.3
4,242,242	+		GFF4224	0.66	-2.0
4,242,242	+		GFF4224	0.66	-2.0
4,242,242	+		GFF4224	0.66	+0.0
4,242,242	+		GFF4224	0.66	-0.4
4,242,242	+		GFF4224	0.66	+0.9
4,242,242	+		GFF4224	0.66	+0.9
4,242,242	+		GFF4224	0.66	+1.3
4,242,245	-		GFF4224	0.67	-1.3
4,242,250	-		GFF4224	0.69	+1.0
4,242,250	-		GFF4224	0.69	-1.2
4,242,250	-		GFF4224	0.69	+0.7
4,242,250	-		GFF4224	0.69	+0.0
4,242,250	-		GFF4224	0.69	-0.2
4,242,250	-		GFF4224	0.69	+0.7
4,242,250	-		GFF4224	0.69	+0.6
4,242,250	-		GFF4224	0.69	-0.7
4,242,256	+		GFF4224	0.71	-1.7
4,242,256	+		GFF4224	0.71	-1.0
4,242,260	-		GFF4224	0.72	-1.5
4,242,260	-		GFF4224	0.72	+0.4
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