Strain Fitness in Sphingobium sp. HT1-2 around GFF4211

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,231,434	-				+0.5
4,231,468	-				-0.9
4,231,478	-				+0.1
4,231,486	+				-0.8
4,231,489	-				-1.8
4,231,489	-				-0.4
4,231,494	-				+0.8
4,231,494	-				+0.0
4,231,501	-				-0.7
4,231,503	+				-0.7
4,231,508	+				+0.6
4,231,511	-				-0.4
4,231,518	+				-0.1
4,231,518	+				+1.3
4,231,526	-				+1.0
4,231,526	-				+0.0
4,231,551	+				-2.3
4,231,564	-				+0.5
4,231,585	+				-0.9
4,231,629	+				-0.3
4,231,637	+				+0.4
4,231,647	+		GFF4210	0.11	+0.1
4,231,654	+		GFF4210	0.12	-0.1
4,231,664	+		GFF4210	0.13	-1.3
4,231,702	+		GFF4210	0.18	+0.3
4,231,702	+		GFF4210	0.18	-2.0
4,231,710	+		GFF4210	0.19	+0.0
4,231,710	-		GFF4210	0.19	+1.7
4,231,720	+		GFF4210	0.20	+0.7
4,231,720	+		GFF4210	0.20	-1.6
4,231,720	+		GFF4210	0.20	-1.9
4,231,727	+		GFF4210	0.21	-0.2
4,231,727	+		GFF4210	0.21	-1.3
4,231,727	+		GFF4210	0.21	+0.5
4,231,727	+		GFF4210	0.21	+0.2
4,231,727	+		GFF4210	0.21	-0.7
4,231,727	+		GFF4210	0.21	-1.3
4,231,728	-		GFF4210	0.21	+1.1
4,231,728	-		GFF4210	0.21	-2.7
4,231,728	-		GFF4210	0.21	-0.5
4,231,733	-		GFF4210	0.21	+0.0
4,231,735	-		GFF4210	0.22	+1.2
4,231,735	-		GFF4210	0.22	+0.0
4,231,735	-		GFF4210	0.22	-0.3
4,231,735	-		GFF4210	0.22	-0.4
4,231,735	-		GFF4210	0.22	-1.7
4,231,735	-		GFF4210	0.22	+0.1
4,231,737	+		GFF4210	0.22	-0.0
4,231,739	+		GFF4210	0.22	-1.1
4,231,739	+		GFF4210	0.22	-0.3
4,231,747	-		GFF4210	0.23	-0.4
4,231,835	+		GFF4210	0.34	+1.1
4,231,837	-		GFF4210	0.34	+1.0
4,231,860	+		GFF4210	0.37	-1.0
4,231,868	-		GFF4210	0.38	-0.9
4,231,875	+		GFF4210	0.38	-0.6
4,231,875	+		GFF4210	0.38	-0.4
4,231,890	+		GFF4210	0.40	-1.8
4,231,898	-		GFF4210	0.41	-2.7
4,231,915	+		GFF4210	0.43	-2.0
4,231,924	+		GFF4210	0.44	+0.3
4,231,926	+		GFF4210	0.44	+0.2
4,231,932	-		GFF4210	0.45	-0.2
4,231,934	+		GFF4210	0.45	+0.6
4,231,961	+		GFF4210	0.49	-0.9
4,231,970	+		GFF4210	0.50	-0.4
4,231,984	-		GFF4210	0.51	+0.4
4,231,989	+		GFF4210	0.52	+0.6
4,231,997	-		GFF4210	0.53	-1.6
4,231,997	-		GFF4210	0.53	+0.9
4,231,997	-		GFF4210	0.53	+0.7
4,232,006	-		GFF4210	0.54	+0.8
4,232,032	+		GFF4210	0.57	-1.2
4,232,033	-		GFF4210	0.57	+0.4
4,232,034	-		GFF4210	0.57	-0.7
4,232,038	-		GFF4210	0.58	+0.7
4,232,051	+		GFF4210	0.59	+0.5
4,232,059	-		GFF4210	0.60	-1.9
4,232,066	-		GFF4210	0.61	-0.1
4,232,077	+		GFF4210	0.62	-1.6
4,232,077	+		GFF4210	0.62	-0.9
4,232,077	+		GFF4210	0.62	+1.1
4,232,077	+		GFF4210	0.62	+0.5
4,232,077	+		GFF4210	0.62	+1.4
4,232,077	+		GFF4210	0.62	+0.5
4,232,085	-		GFF4210	0.63	-1.2
4,232,085	-		GFF4210	0.63	+0.1
4,232,095	+		GFF4210	0.65	-0.3
4,232,095	+		GFF4210	0.65	+0.9
4,232,095	+		GFF4210	0.65	-0.6
4,232,103	-		GFF4210	0.66	-0.4
4,232,136	-		GFF4210	0.70	-1.6
4,232,153	-		GFF4210	0.72	-0.1
4,232,164	-		GFF4210	0.73	+0.2
4,232,176	+		GFF4210	0.74	+0.1
4,232,189	+		GFF4210	0.76	+0.4
4,232,189	+		GFF4210	0.76	-0.3
4,232,189	+		GFF4210	0.76	-0.7
4,232,191	-		GFF4210	0.76	+0.9
4,232,197	-		GFF4210	0.77	-2.4
4,232,197	-		GFF4210	0.77	-1.6
4,232,198	+		GFF4210	0.77	+0.0
4,232,276	+		GFF4210	0.86	+0.0
4,232,286	-		GFF4210	0.87	-1.1
4,232,294	-		GFF4210	0.88	+0.3
4,232,294	-		GFF4210	0.88	-0.9
4,232,299	-		GFF4210	0.89	-0.2
4,232,300	-		GFF4210	0.89	-1.0
4,232,317	-				+2.0
4,232,328	-				-0.2
4,232,344	+				-0.7
4,232,348	+				+0.1
4,232,356	-				-0.0
4,232,356	-				+1.6
4,232,375	+				-1.2
4,232,389	+				+0.7
4,232,408	+				-0.2
4,232,414	-				-0.0
4,232,416	-				-0.1
4,232,416	-				-1.4
4,232,416	-				-0.5
4,232,416	-				-1.3
4,232,416	-				-1.3
4,232,416	-				+0.0
4,232,416	-				-0.1
4,232,416	-				+0.1
4,232,416	-				+0.7
4,232,416	-				+0.4
4,232,418	+				+0.7
4,232,418	-				-0.6
4,232,418	-				-0.6
4,232,426	-				-2.2
4,232,426	-				+1.4
4,232,519	+				-1.3
4,232,663	+		GFF4211	0.20	-1.7
4,233,057	-		GFF4211	0.54	-0.1
4,233,118	-		GFF4211	0.59	-1.4
4,233,137	-		GFF4211	0.61	-0.4
4,233,137	-		GFF4211	0.61	-1.4
4,233,137	-		GFF4211	0.61	-0.9
4,233,227	-		GFF4211	0.69	-1.8
4,233,266	+		GFF4211	0.72	-0.1
4,233,311	+		GFF4211	0.76	-1.8
4,233,311	+		GFF4211	0.76	-1.4
4,233,319	-		GFF4211	0.77	-0.3
4,233,392	+		GFF4211	0.83	-1.3
4,233,415	-		GFF4211	0.85	-0.2
4,233,627	-				-1.8
4,233,663	-				-1.1
4,233,696	+				-1.4
4,233,705	+				-1.4
4,233,705	+				-2.3
4,233,713	-				-1.9
4,233,713	-				-0.4
4,233,713	-				+1.6
4,233,716	+				-1.4
4,233,724	-				-1.1
4,233,768	+		GFF4212	0.22	-0.9
4,233,768	+		GFF4212	0.22	-0.7
4,233,768	+		GFF4212	0.22	-0.4
4,233,776	-		GFF4212	0.28	+0.4
4,233,801	-		GFF4212	0.49	-1.6
4,233,816	+		GFF4212	0.62	-0.7
4,233,816	+		GFF4212	0.62	-1.5
4,233,816	+		GFF4212	0.62	+1.0
4,233,821	+		GFF4212	0.66	-1.9
4,233,824	-		GFF4212	0.68	+0.6
4,233,824	-		GFF4212	0.68	+0.8
4,233,826	+		GFF4212	0.70	+0.3
4,233,826	+		GFF4212	0.70	-0.2
4,233,829	-		GFF4212	0.72	-0.2
4,233,835	+		GFF4212	0.78	+0.8
4,233,842	+		GFF4212	0.83	-1.7
4,233,845	-		GFF4212	0.86	+0.2
4,233,850	-				-0.9
4,233,850	-				-1.7
4,233,850	-				+0.4
4,233,855	+				-1.1
4,233,859	-				+0.9
4,233,860	+				+0.0
4,233,860	+				-0.3
4,233,860	+				-2.2
4,233,860	+				-1.1
4,233,860	+				+1.2
4,233,860	+				+0.9
4,233,860	+				-0.1
4,233,860	+				+0.4
4,233,860	+				+0.7
4,233,863	-				-0.3
4,233,868	-				-0.8
4,233,868	-				-0.4
4,233,868	-				-2.2
4,233,868	-				-2.0
4,233,868	-				-0.5
4,233,881	+				-0.8
4,233,881	+				-1.3
4,233,881	+				+0.4
4,233,881	+				-0.7
4,233,881	+				-1.6
4,233,881	+				+0.1
4,233,881	+				+0.7
4,233,888	+				-0.9
4,233,889	-				-0.1
4,233,889	-				-1.3
4,233,889	-				+0.1
4,233,889	-				-0.6
4,233,889	-				-1.1
4,233,889	-				-0.4
4,233,889	-				-2.6
4,233,889	-				+0.3
4,233,889	-				-0.4
4,233,889	-				-1.4
4,233,889	-				-0.7
4,233,889	-				-2.3
4,233,904	-				-1.4
4,233,909	-				+0.9
4,233,909	-				+0.1
4,233,911	-				+0.6
4,233,911	-				-0.6
4,233,921	+				-1.4
4,233,929	-				+0.6
4,233,947	+				+1.3
4,233,961	-				-0.2
4,233,990	+				+0.9
4,233,995	+				-0.6
4,233,998	-				-0.4
4,234,003	-				-2.1
4,234,003	-				+1.8
4,234,003	-				-0.9
4,234,003	-				+1.3
4,234,024	+				-1.9
4,234,027	-				+1.1
4,234,075	+				-0.0
4,234,075	+				+0.3
4,234,083	-				-1.0
4,234,083	-				-0.7
4,234,093	+				+0.2
4,234,120	-				+0.1
4,234,129	-		GFF4213	0.12	+0.4
4,234,130	-		GFF4213	0.12	-0.7
4,234,131	+		GFF4213	0.12	-0.1
4,234,131	+		GFF4213	0.12	-0.4
4,234,131	+		GFF4213	0.12	+0.2
4,234,131	+		GFF4213	0.12	-0.5
4,234,131	+		GFF4213	0.12	+0.6
4,234,131	+		GFF4213	0.12	+0.3
4,234,131	+		GFF4213	0.12	+0.2
4,234,131	+		GFF4213	0.12	-0.7
4,234,131	+		GFF4213	0.12	-0.4
4,234,139	-		GFF4213	0.15	-1.4
4,234,139	-		GFF4213	0.15	-0.3
4,234,139	-		GFF4213	0.15	-1.2
4,234,139	-		GFF4213	0.15	+0.3
4,234,139	-		GFF4213	0.15	-0.6
4,234,180	-		GFF4213	0.25	-1.1
4,234,189	+		GFF4213	0.27	+1.1
4,234,189	+		GFF4213	0.27	-1.1
4,234,189	+		GFF4213	0.27	+1.6
4,234,189	+		GFF4213	0.27	+0.9
4,234,189	+		GFF4213	0.27	+0.2
4,234,189	+		GFF4213	0.27	+1.0
4,234,197	-		GFF4213	0.29	-1.6
4,234,197	-		GFF4213	0.29	-0.3
4,234,197	-		GFF4213	0.29	+0.3
4,234,197	-		GFF4213	0.29	-1.1
4,234,197	-		GFF4213	0.29	-2.0
4,234,197	-		GFF4213	0.29	-0.8
4,234,197	-		GFF4213	0.29	-2.9
4,234,202	-		GFF4213	0.31	+1.0
4,234,207	+		GFF4213	0.32	+1.0
4,234,214	+		GFF4213	0.34	-0.6
4,234,214	+		GFF4213	0.34	-1.0
4,234,214	+		GFF4213	0.34	-0.0
4,234,214	+		GFF4213	0.34	-1.0
4,234,214	+		GFF4213	0.34	+0.7
4,234,214	+		GFF4213	0.34	-0.7
4,234,214	+		GFF4213	0.34	-1.1
4,234,214	+		GFF4213	0.34	+1.0
4,234,222	-		GFF4213	0.36	-0.8
4,234,222	-		GFF4213	0.36	-1.7
4,234,222	-		GFF4213	0.36	-1.0
4,234,222	-		GFF4213	0.36	+0.2
4,234,222	-		GFF4213	0.36	-1.9
4,234,222	-		GFF4213	0.36	-0.7
4,234,222	-		GFF4213	0.36	-0.4
4,234,222	-		GFF4213	0.36	-1.2
4,234,244	+		GFF4213	0.41	-0.7
4,234,252	-		GFF4213	0.43	-2.1
4,234,252	-		GFF4213	0.43	-0.1
4,234,265	+		GFF4213	0.47	+0.9
4,234,275	+		GFF4213	0.49	-1.5
4,234,275	+		GFF4213	0.49	+0.7
4,234,283	-		GFF4213	0.51	+0.9
4,234,283	-		GFF4213	0.51	-0.4
4,234,283	-		GFF4213	0.51	+0.6
4,234,283	-		GFF4213	0.51	-0.9
4,234,283	-		GFF4213	0.51	-2.4
4,234,283	-		GFF4213	0.51	-0.8
4,234,283	-		GFF4213	0.51	-1.1
4,234,284	+		GFF4213	0.51	+0.4
4,234,284	+		GFF4213	0.51	-1.9
4,234,284	+		GFF4213	0.51	-0.9
4,234,299	+		GFF4213	0.55	-0.4
4,234,299	+		GFF4213	0.55	-0.4
4,234,299	+		GFF4213	0.55	+0.1
4,234,299	+		GFF4213	0.55	+0.7
4,234,299	+		GFF4213	0.55	-0.9
4,234,299	+		GFF4213	0.55	-0.0
4,234,299	+		GFF4213	0.55	+0.3
4,234,299	+		GFF4213	0.55	+0.1
4,234,299	+		GFF4213	0.55	-0.4
4,234,299	+		GFF4213	0.55	-0.4
4,234,299	+		GFF4213	0.55	-1.0
4,234,299	+		GFF4213	0.55	+1.1
4,234,299	+		GFF4213	0.55	+0.1
4,234,299	+		GFF4213	0.55	+0.6
4,234,299	+		GFF4213	0.55	-0.3
4,234,299	+		GFF4213	0.55	+1.1
4,234,299	+		GFF4213	0.55	-0.8
4,234,299	+		GFF4213	0.55	-0.0
4,234,299	+		GFF4213	0.55	-0.6
4,234,299	+		GFF4213	0.55	-0.3
4,234,307	-		GFF4213	0.57	-0.8
4,234,307	-		GFF4213	0.57	-0.8
4,234,307	-		GFF4213	0.57	-0.1
4,234,307	-		GFF4213	0.57	-1.5
4,234,307	-		GFF4213	0.57	+0.1
4,234,307	-		GFF4213	0.57	+0.5
4,234,307	-		GFF4213	0.57	-0.8
4,234,307	-		GFF4213	0.57	+0.2
4,234,307	-		GFF4213	0.57	+0.3
4,234,307	-		GFF4213	0.57	+0.8
4,234,307	-		GFF4213	0.57	-0.9
4,234,307	-		GFF4213	0.57	-1.0
4,234,307	-		GFF4213	0.57	+0.7
4,234,307	-		GFF4213	0.57	-1.8
4,234,307	-		GFF4213	0.57	+0.5
4,234,307	-		GFF4213	0.57	-1.1
4,234,307	-		GFF4213	0.57	+1.0
4,234,307	-		GFF4213	0.57	+1.1
4,234,307	-		GFF4213	0.57	-0.0
4,234,307	-		GFF4213	0.57	-0.8
4,234,307	-		GFF4213	0.57	+0.1
4,234,307	-		GFF4213	0.57	-1.9
4,234,307	-		GFF4213	0.57	+0.7
4,234,307	-		GFF4213	0.57	+0.8
4,234,344	+		GFF4213	0.67	+0.4
4,234,356	+		GFF4213	0.70	-1.0
4,234,356	+		GFF4213	0.70	-1.0
4,234,364	-		GFF4213	0.72	-0.8
4,234,364	-		GFF4213	0.72	-1.4
4,234,376	+		GFF4213	0.75	-0.8
4,234,376	-		GFF4213	0.75	-3.2
4,234,379	+		GFF4213	0.76	+0.9
4,234,379	-		GFF4213	0.76	-0.4
4,234,386	-		GFF4213	0.77	-0.8
4,234,386	-		GFF4213	0.77	-0.2
4,234,387	-		GFF4213	0.78	-0.1
4,234,389	+		GFF4213	0.78	-0.5
4,234,404	+		GFF4213	0.82	+0.5
4,234,409	+		GFF4213	0.83	-0.4
4,234,409	+		GFF4213	0.83	-1.8
4,234,409	+		GFF4213	0.83	-0.8
4,234,409	+		GFF4213	0.83	-1.6
4,234,417	-		GFF4213	0.85	+0.0
4,234,417	-		GFF4213	0.85	-1.4
4,234,417	-		GFF4213	0.85	+0.1
4,234,417	-		GFF4213	0.85	+1.3
4,234,417	-		GFF4213	0.85	+1.3
4,234,417	-		GFF4213	0.85	-0.3
4,234,451	+				-0.3
4,234,451	+				+0.5
4,234,451	+				-0.7
4,234,451	+				-0.0
4,234,451	+				-0.7
4,234,451	+				-0.2
4,234,451	+				+0.6
4,234,451	+				-0.5
4,234,451	+				-0.9
4,234,451	+				-0.0
4,234,451	+				+1.4
4,234,451	+				+0.3
4,234,459	-				-0.6
4,234,459	-				-0.9
4,234,459	-				+0.2
4,234,459	-				-1.4
4,234,465	-				-0.2
4,234,478	+				-1.1
4,234,486	-				+0.2
4,234,492	-				-0.6
4,234,509	-				-0.4
4,234,521	-				-0.9
4,234,521	-				+0.8
4,234,521	-				-2.5
4,234,524	+				+1.3
4,234,539	-				+0.2
4,234,539	-				+1.1
4,234,544	+				-0.0
4,234,578	-		GFF4214	0.18	+0.0
4,234,590	+		GFF4214	0.27	-1.2