Strain Fitness in Sphingobium sp. HT1-2 around GFF4194

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,216,500	+		GFF4192	0.89	-0.3
4,216,506	-		GFF4192	0.90	-0.1
4,216,516	+				-0.2
4,216,545	-				-2.1
4,216,546	+				-0.6
4,216,553	+				+1.7
4,216,558	+				-2.5
4,216,558	+				+0.7
4,216,558	+				-0.1
4,216,558	+				-0.0
4,216,561	-				-0.3
4,216,561	-				+0.8
4,216,566	-				-1.3
4,216,566	-				-0.3
4,216,568	+				-1.3
4,216,568	+				-1.3
4,216,571	-				+0.8
4,216,580	+				+0.4
4,216,580	+				+0.3
4,216,585	+				-0.8
4,216,585	+				+1.1
4,216,609	+				+0.8
4,216,612	+				-0.7
4,216,632	+				+1.5
4,216,632	+				+0.2
4,216,632	+				+0.9
4,216,637	+				-0.7
4,216,640	-				-0.7
4,216,640	-				+0.0
4,216,640	-				-0.4
4,216,645	-				+0.7
4,216,645	-				+0.5
4,216,645	-				-1.1
4,216,676	+				+1.2
4,216,689	+				+0.2
4,216,689	+				+0.7
4,216,697	+				-2.0
4,216,723	+				+0.2
4,216,736	-				+1.0
4,216,736	-				+0.2
4,216,746	-				+1.2
4,216,764	-				-2.5
4,216,767	+				+0.5
4,216,769	-				-1.9
4,216,774	-				-1.0
4,216,786	+				+0.4
4,216,811	+				+0.3
4,216,840	+				+0.0
4,216,840	+				-0.4
4,216,840	+				-0.5
4,216,840	+				+0.1
4,216,840	+				+0.1
4,216,840	+				+0.4
4,216,840	+				-0.5
4,216,840	+				+0.2
4,216,840	+				-1.4
4,216,848	-				-1.3
4,216,848	-				-1.1
4,216,848	-				-0.4
4,216,848	-				-1.6
4,216,848	-				+0.7
4,216,848	-				-1.8
4,216,848	-				-0.4
4,216,848	-				+2.3
4,216,848	-				+0.0
4,216,848	-				+0.2
4,216,848	-				-0.6
4,217,329	-				-2.3
4,217,383	+				-1.1
4,217,390	-				+0.9
4,217,391	+				-1.2
4,217,423	+				+0.2
4,217,439	+				-0.3
4,217,447	-				-0.1
4,217,448	+				+0.1
4,217,449	+				-1.4
4,217,449	+				-0.8
4,217,456	-				+2.1
4,217,457	-				-2.5
4,217,457	-				-0.6
4,217,463	+				+0.0
4,217,463	-				+1.3
4,217,494	+				+1.0
4,217,494	+				+0.4
4,217,494	+				-0.7
4,217,494	+				+0.2
4,217,494	+				-0.4
4,217,494	+				+1.0
4,217,494	+				+0.0
4,217,494	+				-0.4
4,217,494	+				+0.4
4,217,494	+				-3.1
4,217,494	+				-0.8
4,217,494	+				-2.2
4,217,494	+				-0.2
4,217,494	+				+0.9
4,217,494	+				-2.5
4,217,494	+				+0.3
4,217,494	+				+0.9
4,217,494	+				-2.0
4,217,494	+				-2.2
4,217,502	-				+0.8
4,217,502	-				-0.4
4,217,502	-				+0.3
4,217,502	-				-0.1
4,217,502	-				-0.8
4,217,502	-				+0.4
4,217,502	-				+1.0
4,217,502	-				+1.9
4,217,502	-				-0.6
4,217,502	-				+0.3
4,217,502	-				-1.0
4,217,502	-				-1.9
4,217,502	-				-0.4
4,217,502	-				+0.4
4,217,502	-				-0.2
4,217,502	-				-1.3
4,217,502	-				+0.2
4,217,502	-				-0.5
4,217,502	-				-1.7
4,217,502	-				+1.5
4,217,502	-				-1.3
4,217,504	+				-0.5
4,217,504	+				+0.3
4,217,507	-				-1.6
4,217,509	+				+0.5
4,217,509	+				-0.3
4,217,509	+				-0.0
4,217,509	+				-1.3
4,217,512	-				-1.3
4,217,512	-				-0.2
4,217,512	-				+0.7
4,217,517	-				-1.1
4,217,517	-				-0.3
4,217,517	-				+1.0
4,217,517	-				+0.4
4,217,540	+				+0.2
4,217,540	+				+0.8
4,217,540	+				-1.3
4,217,540	+				+1.9
4,217,541	-				-2.5
4,217,543	-				-2.1
4,217,548	-				+0.7
4,217,548	-				-1.2
4,217,548	-				-1.8
4,217,548	-				+0.2
4,217,548	-				-1.0
4,217,557	+				-0.5
4,217,562	+				-1.5
4,217,562	+				+0.5
4,217,562	+				+0.4
4,217,570	-				-0.4
4,217,570	-				-1.4
4,217,587	+				+0.2
4,217,595	-				-1.6
4,217,612	+		GFF4194	0.12	+1.3
4,217,641	+		GFF4194	0.15	+0.0
4,217,649	+		GFF4194	0.15	-0.3
4,217,657	-		GFF4194	0.16	+0.6
4,217,662	-		GFF4194	0.17	+0.4
4,217,662	-		GFF4194	0.17	-0.1
4,217,690	+		GFF4194	0.20	-1.3
4,217,698	-		GFF4194	0.20	-0.6
4,217,709	+		GFF4194	0.22	-0.4
4,217,726	+		GFF4194	0.23	+0.1
4,217,748	+		GFF4194	0.25	-1.6
4,217,756	+		GFF4194	0.26	+0.1
4,217,756	+		GFF4194	0.26	-2.2
4,217,773	-		GFF4194	0.28	-2.2
4,217,773	-		GFF4194	0.28	-0.2
4,217,783	-		GFF4194	0.29	+1.1
4,217,783	-		GFF4194	0.29	+0.3
4,217,785	+		GFF4194	0.29	+0.7
4,217,793	-		GFF4194	0.30	-1.1
4,217,807	+		GFF4194	0.31	+0.4
4,217,822	-		GFF4194	0.33	-2.2
4,217,838	+		GFF4194	0.35	-0.4
4,217,846	-		GFF4194	0.35	+0.5
4,217,847	+		GFF4194	0.36	+0.4
4,217,856	+		GFF4194	0.36	+0.5
4,217,860	-		GFF4194	0.37	+0.8
4,217,860	-		GFF4194	0.37	+0.2
4,217,860	-		GFF4194	0.37	-0.4
4,217,861	+		GFF4194	0.37	+0.2
4,217,861	+		GFF4194	0.37	+1.7
4,217,864	-		GFF4194	0.37	-2.1
4,217,864	-		GFF4194	0.37	-1.3
4,217,864	-		GFF4194	0.37	-0.8
4,217,866	+		GFF4194	0.38	+0.8
4,217,866	+		GFF4194	0.38	+0.4
4,217,866	+		GFF4194	0.38	+0.3
4,217,874	-		GFF4194	0.38	-0.2
4,217,874	-		GFF4194	0.38	+0.9
4,217,874	-		GFF4194	0.38	-0.4
4,217,876	+		GFF4194	0.39	-1.9
4,217,896	+		GFF4194	0.41	-1.8
4,217,896	+		GFF4194	0.41	-0.2
4,217,896	+		GFF4194	0.41	+0.0
4,217,896	+		GFF4194	0.41	-0.4
4,217,896	+		GFF4194	0.41	-1.3
4,217,904	-		GFF4194	0.41	-1.3
4,217,904	-		GFF4194	0.41	-0.4
4,217,906	+		GFF4194	0.42	+1.5
4,217,914	-		GFF4194	0.42	+0.3
4,217,919	-		GFF4194	0.43	+0.4
4,217,949	+		GFF4194	0.46	-0.4
4,217,949	+		GFF4194	0.46	-0.6
4,217,984	+		GFF4194	0.50	+0.7
4,217,984	+		GFF4194	0.50	-1.4
4,217,984	+		GFF4194	0.50	-0.6
4,217,984	+		GFF4194	0.50	+0.6
4,217,984	+		GFF4194	0.50	+0.9
4,217,992	-		GFF4194	0.50	+0.5
4,217,992	-		GFF4194	0.50	+0.5
4,217,992	-		GFF4194	0.50	+1.1
4,217,992	-		GFF4194	0.50	+0.1
4,218,007	+		GFF4194	0.52	+0.0
4,218,010	-		GFF4194	0.52	-0.1
4,218,012	+		GFF4194	0.52	-1.6
4,218,017	+		GFF4194	0.53	-1.4
4,218,030	-		GFF4194	0.54	-0.4
4,218,031	-		GFF4194	0.54	+0.2
4,218,032	-		GFF4194	0.54	-0.4
4,218,042	+		GFF4194	0.55	+0.8
4,218,044	-		GFF4194	0.56	+0.9
4,218,052	+		GFF4194	0.56	+0.2
4,218,052	+		GFF4194	0.56	+1.1
4,218,073	+		GFF4194	0.59	-1.8
4,218,073	+		GFF4194	0.59	-2.2
4,218,073	+		GFF4194	0.59	-0.7
4,218,100	-		GFF4194	0.61	+0.4
4,218,105	-		GFF4194	0.62	-0.6
4,218,105	-		GFF4194	0.62	-0.4
4,218,121	+		GFF4194	0.64	-0.4
4,218,121	+		GFF4194	0.64	+0.4
4,218,121	+		GFF4194	0.64	-1.4
4,218,131	+		GFF4194	0.65	-0.8
4,218,131	+		GFF4194	0.65	-0.8
4,218,131	+		GFF4194	0.65	+0.4
4,218,131	+		GFF4194	0.65	+0.3
4,218,131	+		GFF4194	0.65	-0.7
4,218,131	+		GFF4194	0.65	-1.2
4,218,131	+		GFF4194	0.65	+0.3
4,218,131	+		GFF4194	0.65	-0.6
4,218,131	+		GFF4194	0.65	-0.6
4,218,136	+		GFF4194	0.65	-0.7
4,218,136	+		GFF4194	0.65	-0.1
4,218,136	+		GFF4194	0.65	+1.0
4,218,136	+		GFF4194	0.65	-1.4
4,218,136	+		GFF4194	0.65	-1.4
4,218,136	+		GFF4194	0.65	-0.8
4,218,136	+		GFF4194	0.65	+0.5
4,218,139	-		GFF4194	0.65	-0.1
4,218,139	-		GFF4194	0.65	-2.0
4,218,139	-		GFF4194	0.65	+0.0
4,218,139	-		GFF4194	0.65	+0.3
4,218,139	-		GFF4194	0.65	+0.2
4,218,139	-		GFF4194	0.65	-0.3
4,218,139	-		GFF4194	0.65	+0.2
4,218,139	-		GFF4194	0.65	+0.4
4,218,139	-		GFF4194	0.65	-0.1
4,218,139	-		GFF4194	0.65	-2.0
4,218,141	+		GFF4194	0.66	-1.7
4,218,144	-		GFF4194	0.66	+0.1
4,218,144	-		GFF4194	0.66	-1.2
4,218,144	-		GFF4194	0.66	+0.3
4,218,144	-		GFF4194	0.66	-0.0
4,218,144	-		GFF4194	0.66	+0.2
4,218,144	-		GFF4194	0.66	-0.3
4,218,144	-		GFF4194	0.66	-0.7
4,218,144	-		GFF4194	0.66	+0.2
4,218,144	-		GFF4194	0.66	-1.6
4,218,144	-		GFF4194	0.66	-2.4
4,218,144	-		GFF4194	0.66	+0.6
4,218,175	+		GFF4194	0.69	-1.5
4,218,183	-		GFF4194	0.70	-0.3
4,218,194	+		GFF4194	0.71	-1.0
4,218,195	+		GFF4194	0.71	-0.4
4,218,203	-		GFF4194	0.72	+0.4
4,218,211	-		GFF4194	0.73	+0.2
4,218,235	+		GFF4194	0.75	-1.8
4,218,243	-		GFF4194	0.76	-0.1
4,218,254	+		GFF4194	0.77	-1.0
4,218,254	+		GFF4194	0.77	+0.2
4,218,262	-		GFF4194	0.78	+0.9
4,218,262	-		GFF4194	0.78	+0.2
4,218,262	-		GFF4194	0.78	-0.2
4,218,269	+		GFF4194	0.79	+0.1
4,218,269	+		GFF4194	0.79	-1.3
4,218,269	+		GFF4194	0.79	-2.5
4,218,269	+		GFF4194	0.79	-0.5
4,218,287	+		GFF4194	0.80	+1.3
4,218,300	+		GFF4194	0.82	-0.4
4,218,333	+		GFF4194	0.85	-1.0
4,218,336	+		GFF4194	0.85	-0.7
4,218,377	+		GFF4194	0.90	-1.7
4,218,400	-				-1.2
4,218,402	-				-0.3
4,218,403	+				+1.2
4,218,408	+				+1.4
4,218,408	+				+0.5
4,218,416	-				+0.1
4,218,428	+				+0.0
4,218,428	+				-2.2
4,218,428	+				+0.2
4,218,433	+				-0.0
4,218,433	+				+0.3
4,218,433	+				-0.4
4,218,433	+				+1.1
4,218,436	-				-0.2
4,218,436	-				+0.6
4,218,436	-				-0.2
4,218,436	-				+0.4
4,218,436	-				-0.9
4,218,441	-				-0.8
4,218,441	-				+0.3
4,218,441	-				-1.8
4,218,441	-				-0.8
4,218,446	-				-0.1
4,218,455	-				-0.4
4,218,463	+				-1.2
4,218,481	+				+0.5
4,218,481	+				+0.4
4,218,481	+				+0.5
4,218,486	+				+0.6
4,218,486	+				-0.0
4,218,489	-				-0.3
4,218,489	-				-0.3
4,218,489	-				+0.7
4,218,489	-				+0.6
4,218,494	-				+0.4
4,218,499	-				-0.2
4,218,514	-				-1.3
4,218,531	-				-1.0
4,218,531	-				+1.7
4,218,531	-				+0.6
4,218,531	-				+0.4
4,218,572	+				-0.9
4,218,572	-				-0.1
4,218,577	+				-2.2
4,218,601	+		GFF4195	0.10	+0.6
4,218,611	+		GFF4195	0.11	-1.5
4,218,614	+		GFF4195	0.11	-0.7
4,218,614	-		GFF4195	0.11	-1.6
4,218,614	-		GFF4195	0.11	-1.7
4,218,617	-		GFF4195	0.12	-0.4
4,218,618	+		GFF4195	0.12	-0.6
4,218,623	+		GFF4195	0.12	-1.4
4,218,626	-		GFF4195	0.12	-0.3
4,218,626	-		GFF4195	0.12	-0.3
4,218,627	-		GFF4195	0.13	+0.3
4,218,633	+		GFF4195	0.13	-1.5
4,218,640	+		GFF4195	0.14	-0.3
4,218,648	-		GFF4195	0.14	-1.8
4,218,694	+		GFF4195	0.18	+1.0
4,218,694	+		GFF4195	0.18	-1.0
4,218,694	+		GFF4195	0.18	-1.5
4,218,706	+		GFF4195	0.19	+1.0
4,218,715	+		GFF4195	0.20	+1.4
4,218,725	+		GFF4195	0.21	-0.5
4,218,725	+		GFF4195	0.21	+0.5
4,218,733	-		GFF4195	0.21	-0.6
4,218,733	-		GFF4195	0.21	-0.3
4,218,807	+		GFF4195	0.27	-0.5
4,218,807	+		GFF4195	0.27	+0.0
4,218,807	+		GFF4195	0.27	-1.3
4,218,815	-		GFF4195	0.28	-1.8
4,218,815	-		GFF4195	0.28	+2.0
4,218,815	-		GFF4195	0.28	-0.2
4,218,827	+		GFF4195	0.29	-1.1
4,218,832	+		GFF4195	0.30	-0.6
4,218,832	+		GFF4195	0.30	-0.0
4,218,838	+		GFF4195	0.30	+0.7
4,218,842	+		GFF4195	0.30	-0.5
4,218,857	+		GFF4195	0.32	-2.0
4,218,857	+		GFF4195	0.32	+0.3
4,218,901	+		GFF4195	0.35	+1.4
4,218,901	+		GFF4195	0.35	-2.2
4,218,952	-		GFF4195	0.39	-2.6
4,218,965	-		GFF4195	0.41	+0.4
4,218,970	+		GFF4195	0.41	+0.5
4,218,978	-		GFF4195	0.42	-1.6
4,219,035	+		GFF4195	0.46	+0.6
4,219,045	+		GFF4195	0.47	+0.4
4,219,057	-		GFF4195	0.48	-0.3
4,219,057	-		GFF4195	0.48	+0.7
4,219,079	+		GFF4195	0.50	+0.4
4,219,082	+		GFF4195	0.50	+1.2
4,219,082	+		GFF4195	0.50	+2.2
4,219,082	+		GFF4195	0.50	+0.3
4,219,082	+		GFF4195	0.50	-0.4
4,219,088	+		GFF4195	0.51	+0.8
4,219,088	+		GFF4195	0.51	-0.6
4,219,089	-		GFF4195	0.51	+0.2
4,219,090	-		GFF4195	0.51	+0.3
4,219,096	-		GFF4195	0.51	+0.2
4,219,102	-		GFF4195	0.52	+1.3
4,219,104	+		GFF4195	0.52	-2.3
4,219,104	+		GFF4195	0.52	-1.2
4,219,104	+		GFF4195	0.52	-0.4
4,219,104	+		GFF4195	0.52	-0.4
4,219,104	+		GFF4195	0.52	-0.8
4,219,104	+		GFF4195	0.52	-1.4
4,219,104	+		GFF4195	0.52	-2.1
4,219,104	+		GFF4195	0.52	-0.7
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4,219,432	+		GFF4195	0.79	-1.1
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4,219,459	+		GFF4195	0.81	-0.3
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