Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4113 and GFF4114 are separated by 11 nucleotides GFF4114 and GFF4115 overlap by 4 nucleotides GFF4115 and GFF4116 are separated by 11 nucleotides GFF4116 and GFF4117 are separated by 52 nucleotides
GFF4113 - DNA gyrase subunit B (EC 5.99.1.3), at 4,133,440 to 4,135,956
GFF4113
GFF4114 - hypothetical protein, at 4,135,968 to 4,136,081
GFF4114
GFF4115 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 4,136,078 to 4,136,635
GFF4115
GFF4116 - hypothetical protein, at 4,136,647 to 4,137,150
GFF4116
GFF4117 - Intracellular protease, at 4,137,203 to 4,137,946
GFF4117
Position (kb) 4136
4137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4135.945 kb on - strand at 4135.963 kb on - strand at 4135.989 kb on - strand, within GFF4114 at 4136.003 kb on + strand, within GFF4114 at 4136.011 kb on - strand, within GFF4114 at 4136.028 kb on - strand, within GFF4114 at 4136.028 kb on - strand, within GFF4114 at 4136.041 kb on + strand, within GFF4114 at 4136.044 kb on - strand, within GFF4114 at 4136.075 kb on + strand at 4136.082 kb on - strand at 4136.087 kb on + strand at 4136.087 kb on + strand at 4136.101 kb on - strand at 4136.103 kb on + strand at 4136.103 kb on + strand at 4136.103 kb on + strand at 4136.103 kb on + strand at 4136.103 kb on + strand at 4136.103 kb on + strand at 4136.103 kb on + strand at 4136.106 kb on - strand at 4136.108 kb on + strand at 4136.108 kb on + strand at 4136.108 kb on + strand at 4136.111 kb on - strand at 4136.111 kb on - strand at 4136.111 kb on - strand at 4136.111 kb on - strand at 4136.111 kb on - strand at 4136.114 kb on + strand at 4136.114 kb on + strand at 4136.116 kb on - strand at 4136.116 kb on - strand at 4136.117 kb on - strand at 4136.117 kb on - strand at 4136.122 kb on - strand at 4136.152 kb on - strand, within GFF4115 at 4136.154 kb on + strand, within GFF4115 at 4136.161 kb on + strand, within GFF4115 at 4136.203 kb on + strand, within GFF4115 at 4136.203 kb on + strand, within GFF4115 at 4136.203 kb on + strand, within GFF4115 at 4136.203 kb on + strand, within GFF4115 at 4136.203 kb on - strand, within GFF4115 at 4136.211 kb on - strand, within GFF4115 at 4136.211 kb on - strand, within GFF4115 at 4136.211 kb on - strand, within GFF4115 at 4136.222 kb on - strand, within GFF4115 at 4136.250 kb on - strand, within GFF4115 at 4136.251 kb on + strand, within GFF4115 at 4136.262 kb on + strand, within GFF4115 at 4136.281 kb on + strand, within GFF4115 at 4136.281 kb on + strand, within GFF4115 at 4136.284 kb on - strand, within GFF4115 at 4136.296 kb on - strand, within GFF4115 at 4136.309 kb on - strand, within GFF4115 at 4136.328 kb on - strand, within GFF4115 at 4136.328 kb on - strand, within GFF4115 at 4136.342 kb on + strand, within GFF4115 at 4136.350 kb on - strand, within GFF4115 at 4136.359 kb on + strand, within GFF4115 at 4136.371 kb on + strand, within GFF4115 at 4136.379 kb on - strand, within GFF4115 at 4136.379 kb on - strand, within GFF4115 at 4136.379 kb on - strand, within GFF4115 at 4136.384 kb on - strand, within GFF4115 at 4136.386 kb on + strand, within GFF4115 at 4136.394 kb on - strand, within GFF4115 at 4136.426 kb on + strand, within GFF4115 at 4136.434 kb on - strand, within GFF4115 at 4136.439 kb on - strand, within GFF4115 at 4136.440 kb on - strand, within GFF4115 at 4136.440 kb on - strand, within GFF4115 at 4136.471 kb on + strand, within GFF4115 at 4136.471 kb on + strand, within GFF4115 at 4136.471 kb on + strand, within GFF4115 at 4136.471 kb on + strand, within GFF4115 at 4136.478 kb on - strand, within GFF4115 at 4136.478 kb on - strand, within GFF4115 at 4136.479 kb on - strand, within GFF4115 at 4136.479 kb on - strand, within GFF4115 at 4136.479 kb on - strand, within GFF4115 at 4136.479 kb on - strand, within GFF4115 at 4136.479 kb on - strand, within GFF4115 at 4136.479 kb on - strand, within GFF4115 at 4136.479 kb on - strand, within GFF4115 at 4136.479 kb on - strand, within GFF4115 at 4136.481 kb on + strand, within GFF4115 at 4136.495 kb on + strand, within GFF4115 at 4136.495 kb on - strand, within GFF4115 at 4136.500 kb on + strand, within GFF4115 at 4136.508 kb on - strand, within GFF4115 at 4136.508 kb on - strand, within GFF4115 at 4136.512 kb on + strand, within GFF4115 at 4136.514 kb on + strand, within GFF4115 at 4136.584 kb on + strand at 4136.591 kb on + strand at 4136.599 kb on - strand at 4136.605 kb on + strand at 4136.656 kb on + strand at 4136.657 kb on - strand at 4136.659 kb on + strand at 4136.659 kb on - strand at 4136.668 kb on - strand at 4136.697 kb on + strand at 4136.703 kb on + strand, within GFF4116 at 4136.703 kb on - strand, within GFF4116 at 4136.705 kb on + strand, within GFF4116 at 4136.707 kb on + strand, within GFF4116 at 4136.715 kb on - strand, within GFF4116 at 4136.728 kb on + strand, within GFF4116 at 4136.728 kb on + strand, within GFF4116 at 4136.728 kb on + strand, within GFF4116 at 4136.749 kb on + strand, within GFF4116 at 4136.786 kb on + strand, within GFF4116 at 4136.859 kb on + strand, within GFF4116 at 4136.859 kb on + strand, within GFF4116 at 4136.872 kb on - strand, within GFF4116 at 4136.874 kb on - strand, within GFF4116 at 4136.882 kb on - strand, within GFF4116 at 4136.888 kb on + strand, within GFF4116 at 4136.893 kb on + strand, within GFF4116 at 4136.893 kb on + strand, within GFF4116 at 4136.896 kb on - strand, within GFF4116 at 4136.921 kb on + strand, within GFF4116 at 4136.926 kb on + strand, within GFF4116 at 4136.941 kb on - strand, within GFF4116 at 4136.950 kb on - strand, within GFF4116 at 4136.961 kb on + strand, within GFF4116 at 4136.961 kb on + strand, within GFF4116 at 4136.961 kb on + strand, within GFF4116 at 4136.961 kb on + strand, within GFF4116 at 4136.961 kb on + strand, within GFF4116 at 4136.969 kb on - strand, within GFF4116 at 4136.969 kb on - strand, within GFF4116 at 4136.969 kb on - strand, within GFF4116 at 4136.981 kb on + strand, within GFF4116 at 4136.983 kb on + strand, within GFF4116 at 4136.989 kb on - strand, within GFF4116 at 4137.010 kb on + strand, within GFF4116 at 4137.035 kb on + strand, within GFF4116 at 4137.040 kb on + strand, within GFF4116 at 4137.041 kb on - strand, within GFF4116 at 4137.043 kb on - strand, within GFF4116 at 4137.043 kb on - strand, within GFF4116 at 4137.043 kb on - strand, within GFF4116 at 4137.043 kb on - strand, within GFF4116 at 4137.055 kb on + strand, within GFF4116 at 4137.063 kb on - strand, within GFF4116 at 4137.063 kb on - strand, within GFF4116 at 4137.074 kb on + strand, within GFF4116 at 4137.077 kb on - strand, within GFF4116 at 4137.080 kb on + strand, within GFF4116 at 4137.082 kb on - strand, within GFF4116 at 4137.088 kb on + strand, within GFF4116 at 4137.106 kb on + strand at 4137.145 kb on + strand at 4137.171 kb on + strand at 4137.214 kb on + strand at 4137.214 kb on + strand at 4137.214 kb on + strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.222 kb on - strand at 4137.225 kb on + strand at 4137.240 kb on + strand at 4137.248 kb on - strand at 4137.287 kb on - strand, within GFF4117 at 4137.338 kb on - strand, within GFF4117 at 4137.341 kb on + strand, within GFF4117 at 4137.343 kb on + strand, within GFF4117 at 4137.346 kb on + strand, within GFF4117 at 4137.366 kb on + strand, within GFF4117 at 4137.366 kb on + strand, within GFF4117 at 4137.366 kb on + strand, within GFF4117 at 4137.374 kb on - strand, within GFF4117 at 4137.374 kb on - strand, within GFF4117 at 4137.374 kb on - strand, within GFF4117 at 4137.374 kb on - strand, within GFF4117 at 4137.393 kb on - strand, within GFF4117 at 4137.412 kb on + strand, within GFF4117 at 4137.442 kb on - strand, within GFF4117 at 4137.451 kb on + strand, within GFF4117 at 4137.459 kb on - strand, within GFF4117 at 4137.471 kb on + strand, within GFF4117 at 4137.494 kb on + strand, within GFF4117 at 4137.494 kb on + strand, within GFF4117 at 4137.502 kb on - strand, within GFF4117 at 4137.565 kb on + strand, within GFF4117 at 4137.573 kb on - strand, within GFF4117 at 4137.581 kb on - strand, within GFF4117 at 4137.581 kb on - strand, within GFF4117 at 4137.600 kb on + strand, within GFF4117 at 4137.608 kb on - strand, within GFF4117 at 4137.610 kb on + strand, within GFF4117 at 4137.612 kb on - strand, within GFF4117 at 4137.612 kb on - strand, within GFF4117 at 4137.612 kb on - strand, within GFF4117 at 4137.613 kb on - strand, within GFF4117 at 4137.618 kb on - strand, within GFF4117 at 4137.618 kb on - strand, within GFF4117 at 4137.618 kb on - strand, within GFF4117 at 4137.626 kb on + strand, within GFF4117
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 4,135,945 - -1.4 4,135,963 - +0.3 4,135,989 - GFF4114 0.18 -2.6 4,136,003 + GFF4114 0.31 -1.4 4,136,011 - GFF4114 0.38 -0.7 4,136,028 - GFF4114 0.53 +1.0 4,136,028 - GFF4114 0.53 +0.4 4,136,041 + GFF4114 0.64 -1.2 4,136,044 - GFF4114 0.67 -1.2 4,136,075 + +0.8 4,136,082 - +0.4 4,136,087 + -1.0 4,136,087 + -2.4 4,136,101 - -0.5 4,136,103 + -0.8 4,136,103 + -0.4 4,136,103 + +0.5 4,136,103 + +0.4 4,136,103 + +0.7 4,136,103 + +1.1 4,136,103 + -1.8 4,136,106 - -0.4 4,136,108 + +0.9 4,136,108 + +0.4 4,136,108 + -0.2 4,136,111 - -2.5 4,136,111 - -0.3 4,136,111 - -0.6 4,136,111 - +0.3 4,136,111 - -0.0 4,136,114 + +0.3 4,136,114 + -1.3 4,136,116 - +1.6 4,136,116 - -0.4 4,136,117 - -1.7 4,136,117 - +0.5 4,136,122 - +0.6 4,136,152 - GFF4115 0.13 -1.2 4,136,154 + GFF4115 0.14 -0.2 4,136,161 + GFF4115 0.15 -1.5 4,136,203 + GFF4115 0.22 +0.8 4,136,203 + GFF4115 0.22 +0.4 4,136,203 + GFF4115 0.22 +0.2 4,136,203 + GFF4115 0.22 +0.4 4,136,203 - GFF4115 0.22 -0.6 4,136,211 - GFF4115 0.24 +0.6 4,136,211 - GFF4115 0.24 -1.1 4,136,211 - GFF4115 0.24 -0.9 4,136,222 - GFF4115 0.26 +0.1 4,136,250 - GFF4115 0.31 -1.2 4,136,251 + GFF4115 0.31 -0.8 4,136,262 + GFF4115 0.33 -2.8 4,136,281 + GFF4115 0.36 -2.0 4,136,281 + GFF4115 0.36 -0.6 4,136,284 - GFF4115 0.37 +0.6 4,136,296 - GFF4115 0.39 -0.6 4,136,309 - GFF4115 0.41 -0.4 4,136,328 - GFF4115 0.45 +0.3 4,136,328 - GFF4115 0.45 -0.1 4,136,342 + GFF4115 0.47 -0.2 4,136,350 - GFF4115 0.49 +0.1 4,136,359 + GFF4115 0.50 -1.3 4,136,371 + GFF4115 0.53 +0.1 4,136,379 - GFF4115 0.54 +0.1 4,136,379 - GFF4115 0.54 +1.3 4,136,379 - GFF4115 0.54 +1.0 4,136,384 - GFF4115 0.55 -0.2 4,136,386 + GFF4115 0.55 -0.3 4,136,394 - GFF4115 0.57 +1.0 4,136,426 + GFF4115 0.62 +0.2 4,136,434 - GFF4115 0.64 -0.6 4,136,439 - GFF4115 0.65 +0.2 4,136,440 - GFF4115 0.65 -2.4 4,136,440 - GFF4115 0.65 +1.3 4,136,471 + GFF4115 0.70 -0.2 4,136,471 + GFF4115 0.70 -1.4 4,136,471 + GFF4115 0.70 -0.3 4,136,471 + GFF4115 0.70 -0.6 4,136,478 - GFF4115 0.72 -0.6 4,136,478 - GFF4115 0.72 +0.4 4,136,479 - GFF4115 0.72 +0.4 4,136,479 - GFF4115 0.72 -0.3 4,136,479 - GFF4115 0.72 -1.8 4,136,479 - GFF4115 0.72 -0.9 4,136,479 - GFF4115 0.72 -0.1 4,136,479 - GFF4115 0.72 +0.9 4,136,479 - GFF4115 0.72 -0.5 4,136,479 - GFF4115 0.72 -0.2 4,136,481 + GFF4115 0.72 -1.1 4,136,495 + GFF4115 0.75 -0.8 4,136,495 - GFF4115 0.75 +0.7 4,136,500 + GFF4115 0.76 +0.1 4,136,508 - GFF4115 0.77 -0.8 4,136,508 - GFF4115 0.77 -1.3 4,136,512 + GFF4115 0.78 -0.5 4,136,514 + GFF4115 0.78 +0.6 4,136,584 + -2.0 4,136,591 + -1.4 4,136,599 - -1.3 4,136,605 + -2.7 4,136,656 + -0.2 4,136,657 - +0.5 4,136,659 + +0.2 4,136,659 - -1.8 4,136,668 - +0.6 4,136,697 + -1.4 4,136,703 + GFF4116 0.11 -0.4 4,136,703 - GFF4116 0.11 -0.4 4,136,705 + GFF4116 0.12 +0.5 4,136,707 + GFF4116 0.12 -2.9 4,136,715 - GFF4116 0.13 +0.3 4,136,728 + GFF4116 0.16 -0.6 4,136,728 + GFF4116 0.16 -0.8 4,136,728 + GFF4116 0.16 +1.0 4,136,749 + GFF4116 0.20 -1.5 4,136,786 + GFF4116 0.28 +0.1 4,136,859 + GFF4116 0.42 -0.3 4,136,859 + GFF4116 0.42 -2.0 4,136,872 - GFF4116 0.45 -2.5 4,136,874 - GFF4116 0.45 -1.2 4,136,882 - GFF4116 0.47 -0.2 4,136,888 + GFF4116 0.48 -1.9 4,136,893 + GFF4116 0.49 +0.6 4,136,893 + GFF4116 0.49 +0.2 4,136,896 - GFF4116 0.49 -0.6 4,136,921 + GFF4116 0.54 -0.5 4,136,926 + GFF4116 0.55 +0.7 4,136,941 - GFF4116 0.58 -0.2 4,136,950 - GFF4116 0.60 -1.9 4,136,961 + GFF4116 0.62 +0.1 4,136,961 + GFF4116 0.62 +0.6 4,136,961 + GFF4116 0.62 -0.3 4,136,961 + GFF4116 0.62 +1.1 4,136,961 + GFF4116 0.62 -0.7 4,136,969 - GFF4116 0.64 +0.2 4,136,969 - GFF4116 0.64 -1.3 4,136,969 - GFF4116 0.64 -0.4 4,136,981 + GFF4116 0.66 -0.1 4,136,983 + GFF4116 0.67 -0.7 4,136,989 - GFF4116 0.68 -1.1 4,137,010 + GFF4116 0.72 +0.7 4,137,035 + GFF4116 0.77 -1.7 4,137,040 + GFF4116 0.78 -1.0 4,137,041 - GFF4116 0.78 -1.8 4,137,043 - GFF4116 0.79 -1.6 4,137,043 - GFF4116 0.79 +0.3 4,137,043 - GFF4116 0.79 -0.3 4,137,043 - GFF4116 0.79 -0.8 4,137,055 + GFF4116 0.81 +1.5 4,137,063 - GFF4116 0.83 -0.5 4,137,063 - GFF4116 0.83 +0.3 4,137,074 + GFF4116 0.85 +1.3 4,137,077 - GFF4116 0.85 -1.2 4,137,080 + GFF4116 0.86 +0.3 4,137,082 - GFF4116 0.86 +0.2 4,137,088 + GFF4116 0.88 -0.0 4,137,106 + +0.6 4,137,145 + -1.5 4,137,171 + +0.3 4,137,214 + +0.6 4,137,214 + -0.7 4,137,214 + -2.3 4,137,222 - -2.0 4,137,222 - -1.8 4,137,222 - -0.1 4,137,222 - +0.1 4,137,222 - +0.6 4,137,222 - -0.5 4,137,222 - -0.4 4,137,222 - -1.2 4,137,222 - -2.1 4,137,222 - +0.6 4,137,225 + +0.8 4,137,240 + +0.5 4,137,248 - +0.1 4,137,287 - GFF4117 0.11 +1.4 4,137,338 - GFF4117 0.18 -0.6 4,137,341 + GFF4117 0.19 -0.6 4,137,343 + GFF4117 0.19 +0.3 4,137,346 + GFF4117 0.19 +0.3 4,137,366 + GFF4117 0.22 +0.3 4,137,366 + GFF4117 0.22 +0.1 4,137,366 + GFF4117 0.22 -0.4 4,137,374 - GFF4117 0.23 -0.1 4,137,374 - GFF4117 0.23 -1.7 4,137,374 - GFF4117 0.23 -1.1 4,137,374 - GFF4117 0.23 -0.8 4,137,393 - GFF4117 0.26 -2.9 4,137,412 + GFF4117 0.28 -3.2 4,137,442 - GFF4117 0.32 -1.5 4,137,451 + GFF4117 0.33 -1.7 4,137,459 - GFF4117 0.34 +1.2 4,137,471 + GFF4117 0.36 -0.6 4,137,494 + GFF4117 0.39 -0.1 4,137,494 + GFF4117 0.39 +1.6 4,137,502 - GFF4117 0.40 -0.7 4,137,565 + GFF4117 0.49 -0.9 4,137,573 - GFF4117 0.50 +0.4 4,137,581 - GFF4117 0.51 -0.1 4,137,581 - GFF4117 0.51 -2.0 4,137,600 + GFF4117 0.53 -0.3 4,137,608 - GFF4117 0.54 -2.2 4,137,610 + GFF4117 0.55 -0.6 4,137,612 - GFF4117 0.55 -1.8 4,137,612 - GFF4117 0.55 -1.7 4,137,612 - GFF4117 0.55 -0.8 4,137,613 - GFF4117 0.55 -0.2 4,137,618 - GFF4117 0.56 +0.1 4,137,618 - GFF4117 0.56 -1.3 4,137,618 - GFF4117 0.56 +1.8 4,137,626 + GFF4117 0.57 -2.0
Or see this region's nucleotide sequence