Strain Fitness in Sphingobium sp. HT1-2 around GFF4085

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,095,723	-		GFF4083	0.79	+1.0
4,095,762	-		GFF4083	0.81	-2.3
4,095,784	+		GFF4083	0.83	-0.1
4,095,785	-		GFF4083	0.83	+0.8
4,095,792	-		GFF4083	0.84	-2.2
4,095,792	-		GFF4083	0.84	-1.3
4,095,792	-		GFF4083	0.84	+1.1
4,095,793	-		GFF4083	0.84	-0.6
4,095,803	-		GFF4083	0.85	+0.6
4,095,809	+		GFF4083	0.85	-1.2
4,095,809	+		GFF4083	0.85	-0.5
4,095,809	+		GFF4083	0.85	+0.1
4,095,809	+		GFF4083	0.85	+1.2
4,095,809	+		GFF4083	0.85	-0.1
4,095,809	+		GFF4083	0.85	-1.5
4,095,809	+		GFF4083	0.85	+2.0
4,095,809	+		GFF4083	0.85	-0.2
4,095,817	-		GFF4083	0.86	-0.2
4,095,817	-		GFF4083	0.86	-0.3
4,095,817	-		GFF4083	0.86	+0.1
4,095,817	-		GFF4083	0.86	-1.4
4,095,819	+		GFF4083	0.86	-0.3
4,095,858	+		GFF4083	0.89	+0.8
4,095,858	+		GFF4083	0.89	-0.8
4,095,863	+		GFF4083	0.89	-1.2
4,095,866	-		GFF4083	0.89	-0.8
4,095,866	-		GFF4083	0.89	-2.5
4,095,866	-		GFF4083	0.89	+1.0
4,095,866	-		GFF4083	0.89	-0.4
4,095,869	+		GFF4083	0.90	-2.3
4,095,869	+		GFF4083	0.90	-1.1
4,095,873	+		GFF4083	0.90	+1.1
4,095,873	+		GFF4083	0.90	+1.0
4,095,873	+		GFF4083	0.90	+0.7
4,095,881	-				-0.6
4,095,886	-				+0.6
4,095,910	-				-1.2
4,095,910	-				-1.2
4,095,911	-				-0.1
4,095,920	+				+0.5
4,095,925	+				-1.0
4,095,928	-				-0.2
4,095,928	-				-1.4
4,095,938	-				+0.5
4,095,940	-				-0.6
4,095,942	+				-0.1
4,095,948	+				-1.2
4,095,956	-				-1.0
4,095,974	+				+0.7
4,095,982	-				-3.0
4,095,982	-				-0.6
4,095,993	-				-0.3
4,096,002	-				-0.5
4,096,009	+				-0.9
4,096,017	-				+0.5
4,096,038	+				+0.3
4,096,064	+				-1.4
4,096,091	+				-1.0
4,096,091	+				+0.5
4,096,091	+				-0.3
4,096,091	+				-2.5
4,096,095	-				+2.0
4,096,099	-				+0.1
4,096,101	+				-1.3
4,096,111	+				+0.3
4,096,119	-				+0.0
4,096,119	-				+0.8
4,096,162	+		GFF4084	0.16	-2.4
4,096,167	+		GFF4084	0.17	-0.7
4,096,170	-		GFF4084	0.17	+0.4
4,096,179	+		GFF4084	0.19	-1.0
4,096,180	+		GFF4084	0.19	+0.7
4,096,180	-		GFF4084	0.19	+1.3
4,096,182	+		GFF4084	0.19	-1.4
4,096,185	-		GFF4084	0.20	-0.3
4,096,188	+		GFF4084	0.20	-0.5
4,096,206	+		GFF4084	0.23	-1.4
4,096,208	+		GFF4084	0.23	-0.9
4,096,214	-		GFF4084	0.24	+1.5
4,096,215	+		GFF4084	0.24	-0.2
4,096,216	-		GFF4084	0.24	-0.0
4,096,216	-		GFF4084	0.24	+0.9
4,096,223	-		GFF4084	0.25	-0.4
4,096,233	+		GFF4084	0.27	-0.3
4,096,233	+		GFF4084	0.27	-0.3
4,096,233	+		GFF4084	0.27	-2.5
4,096,233	+		GFF4084	0.27	-0.9
4,096,233	+		GFF4084	0.27	+0.4
4,096,233	+		GFF4084	0.27	+0.3
4,096,233	+		GFF4084	0.27	-0.6
4,096,233	-		GFF4084	0.27	-1.5
4,096,233	-		GFF4084	0.27	-0.3
4,096,241	-		GFF4084	0.28	-0.4
4,096,262	+		GFF4084	0.31	-0.2
4,096,307	+		GFF4084	0.38	+0.4
4,096,309	+		GFF4084	0.39	-1.9
4,096,325	-		GFF4084	0.41	-0.0
4,096,358	+		GFF4084	0.46	+1.2
4,096,363	+		GFF4084	0.47	-0.1
4,096,363	+		GFF4084	0.47	-1.9
4,096,363	+		GFF4084	0.47	+0.3
4,096,363	+		GFF4084	0.47	-0.3
4,096,363	+		GFF4084	0.47	-2.5
4,096,371	-		GFF4084	0.48	-1.4
4,096,414	-		GFF4084	0.55	-1.5
4,096,420	+		GFF4084	0.56	+1.3
4,096,428	-		GFF4084	0.57	-0.7
4,096,428	-		GFF4084	0.57	-1.1
4,096,428	-		GFF4084	0.57	-0.2
4,096,444	-		GFF4084	0.60	+0.8
4,096,446	+		GFF4084	0.60	+0.1
4,096,448	+		GFF4084	0.60	-1.2
4,096,454	-		GFF4084	0.61	-0.5
4,096,455	+		GFF4084	0.61	-0.2
4,096,456	-		GFF4084	0.62	-1.1
4,096,456	-		GFF4084	0.62	+0.2
4,096,461	+		GFF4084	0.62	-0.1
4,096,461	+		GFF4084	0.62	-0.2
4,096,511	-		GFF4084	0.70	-0.2
4,096,525	+		GFF4084	0.72	-0.2
4,096,531	+		GFF4084	0.73	-0.4
4,096,543	-		GFF4084	0.75	-2.1
4,096,551	+		GFF4084	0.76	-2.9
4,096,551	+		GFF4084	0.76	-1.7
4,096,558	+		GFF4084	0.77	-2.0
4,096,558	+		GFF4084	0.77	+1.8
4,096,558	+		GFF4084	0.77	-1.5
4,096,559	-		GFF4084	0.78	-0.5
4,096,566	-		GFF4084	0.79	+0.4
4,096,566	-		GFF4084	0.79	+1.0
4,096,567	+		GFF4084	0.79	-0.2
4,096,576	-		GFF4084	0.80	+1.6
4,096,576	-		GFF4084	0.80	-0.6
4,096,591	+		GFF4084	0.82	-2.0
4,096,591	+		GFF4084	0.82	-1.5
4,096,599	+		GFF4084	0.84	-0.2
4,096,599	-		GFF4084	0.84	-0.4
4,096,603	-		GFF4084	0.84	-0.6
4,096,628	+		GFF4084	0.88	-0.8
4,096,628	+		GFF4084	0.88	+1.0
4,096,633	+		GFF4084	0.89	-0.6
4,096,633	+		GFF4084	0.89	-2.5
4,096,633	+		GFF4084	0.89	-1.0
4,096,634	-		GFF4084	0.89	-1.8
4,096,636	-		GFF4084	0.89	+1.1
4,096,641	-				-1.5
4,096,641	-				-0.4
4,096,665	+				+0.8
4,096,665	+				+0.0
4,096,666	+				+0.1
4,096,674	-				+0.8
4,096,681	+				-0.1
4,096,681	+				-0.2
4,096,681	+				-0.5
4,096,684	+				-0.8
4,096,684	+				-0.8
4,096,689	-				-0.1
4,096,689	-				+1.3
4,096,689	-				-1.5
4,096,692	-				-0.8
4,096,712	+				+0.2
4,096,712	+				-0.2
4,096,767	+				-0.4
4,096,804	+				-0.1
4,096,808	+				+1.3
4,096,814	+				-0.2
4,096,822	-				-1.4
4,096,822	-				-1.2
4,096,833	+				+0.2
4,096,841	-				+1.1
4,096,851	+				-2.9
4,096,854	-				-0.9
4,096,869	-		GFF4085	0.10	+0.1
4,096,898	-		GFF4085	0.12	-1.8
4,096,908	+		GFF4085	0.13	-0.8
4,096,908	+		GFF4085	0.13	-0.2
4,096,921	+		GFF4085	0.14	-1.2
4,096,942	+		GFF4085	0.15	-1.2
4,096,942	+		GFF4085	0.15	-0.8
4,096,952	-		GFF4085	0.16	-1.7
4,096,955	-		GFF4085	0.16	-0.2
4,096,959	+		GFF4085	0.16	-1.6
4,096,959	+		GFF4085	0.16	-1.9
4,096,967	-		GFF4085	0.17	-0.8
4,096,967	-		GFF4085	0.17	-0.4
4,096,967	-		GFF4085	0.17	-1.3
4,096,967	-		GFF4085	0.17	+0.1
4,096,984	-		GFF4085	0.18	-1.2
4,096,997	+		GFF4085	0.19	-0.6
4,096,997	+		GFF4085	0.19	-2.2
4,097,005	-		GFF4085	0.19	-0.9
4,097,021	+		GFF4085	0.21	-0.8
4,097,024	-		GFF4085	0.21	-1.8
4,097,024	-		GFF4085	0.21	-1.5
4,097,024	-		GFF4085	0.21	+0.9
4,097,039	-		GFF4085	0.22	-1.1
4,097,047	+		GFF4085	0.22	+0.5
4,097,047	+		GFF4085	0.22	+0.9
4,097,047	+		GFF4085	0.22	-1.2
4,097,055	+		GFF4085	0.23	-0.0
4,097,055	-		GFF4085	0.23	-0.7
4,097,055	-		GFF4085	0.23	-0.0
4,097,060	+		GFF4085	0.23	+1.1
4,097,063	-		GFF4085	0.23	-0.5
4,097,065	+		GFF4085	0.24	-2.2
4,097,073	-		GFF4085	0.24	+0.8
4,097,080	-		GFF4085	0.25	+1.2
4,097,092	-		GFF4085	0.25	-0.2
4,097,097	-		GFF4085	0.26	-0.1
4,097,103	+		GFF4085	0.26	-2.6
4,097,104	+		GFF4085	0.26	+0.1
4,097,107	-		GFF4085	0.27	-1.1
4,097,119	+		GFF4085	0.27	-1.1
4,097,120	+		GFF4085	0.27	-0.8
4,097,125	+		GFF4085	0.28	+0.1
4,097,133	+		GFF4085	0.28	-1.7
4,097,135	+		GFF4085	0.28	+0.9
4,097,135	+		GFF4085	0.28	-0.4
4,097,138	-		GFF4085	0.29	-0.9
4,097,139	+		GFF4085	0.29	-1.8
4,097,141	-		GFF4085	0.29	-1.6
4,097,141	-		GFF4085	0.29	-1.9
4,097,141	-		GFF4085	0.29	+1.1
4,097,141	-		GFF4085	0.29	-3.0
4,097,141	-		GFF4085	0.29	+0.5
4,097,141	-		GFF4085	0.29	+0.2
4,097,143	+		GFF4085	0.29	+0.2
4,097,143	-		GFF4085	0.29	-0.6
4,097,148	+		GFF4085	0.29	-0.2
4,097,151	-		GFF4085	0.30	+0.5
4,097,151	-		GFF4085	0.30	-0.6
4,097,155	-		GFF4085	0.30	-1.8
4,097,156	-		GFF4085	0.30	-1.0
4,097,175	+		GFF4085	0.31	+0.3
4,097,175	+		GFF4085	0.31	-0.6
4,097,200	-		GFF4085	0.33	-0.6
4,097,205	+		GFF4085	0.33	+0.1
4,097,205	+		GFF4085	0.33	+0.4
4,097,205	-		GFF4085	0.33	-1.2
4,097,213	-		GFF4085	0.34	-1.5
4,097,213	-		GFF4085	0.34	+0.3
4,097,213	-		GFF4085	0.34	+0.6
4,097,213	-		GFF4085	0.34	+1.1
4,097,214	-		GFF4085	0.34	-1.3
4,097,216	+		GFF4085	0.34	-0.7
4,097,224	-		GFF4085	0.35	-1.2
4,097,226	+		GFF4085	0.35	-1.8
4,097,234	-		GFF4085	0.35	-0.1
4,097,251	+		GFF4085	0.36	-1.5
4,097,251	+		GFF4085	0.36	-0.2
4,097,251	+		GFF4085	0.36	+0.4
4,097,251	+		GFF4085	0.36	+0.7
4,097,251	+		GFF4085	0.36	-1.2
4,097,259	-		GFF4085	0.37	-0.3
4,097,259	-		GFF4085	0.37	+0.1
4,097,276	+		GFF4085	0.38	+0.2
4,097,287	+		GFF4085	0.39	-0.2
4,097,287	+		GFF4085	0.39	-2.0
4,097,287	+		GFF4085	0.39	+1.3
4,097,293	+		GFF4085	0.39	-0.4
4,097,295	-		GFF4085	0.39	+0.0
4,097,296	-		GFF4085	0.40	-0.4
4,097,313	+		GFF4085	0.41	+0.1
4,097,330	-		GFF4085	0.42	-1.4
4,097,330	-		GFF4085	0.42	-2.2
4,097,340	+		GFF4085	0.43	-1.5
4,097,340	-		GFF4085	0.43	+0.8
4,097,363	-		GFF4085	0.44	-1.5
4,097,370	-		GFF4085	0.45	-0.2
4,097,415	+		GFF4085	0.48	+0.3
4,097,432	+		GFF4085	0.49	-0.5
4,097,432	+		GFF4085	0.49	-0.4
4,097,432	+		GFF4085	0.49	+0.3
4,097,432	+		GFF4085	0.49	-0.2
4,097,440	-		GFF4085	0.49	-2.3
4,097,442	-		GFF4085	0.50	+1.5
4,097,454	+		GFF4085	0.50	+0.7
4,097,454	+		GFF4085	0.50	-0.8
4,097,459	+		GFF4085	0.51	-0.9
4,097,467	-		GFF4085	0.51	+0.5
4,097,482	-		GFF4085	0.52	+0.6
4,097,540	+		GFF4085	0.56	-0.2
4,097,557	+		GFF4085	0.58	+1.6
4,097,570	+		GFF4085	0.58	-2.0
4,097,570	+		GFF4085	0.58	-1.8
4,097,570	+		GFF4085	0.58	+0.7
4,097,570	+		GFF4085	0.58	-1.3
4,097,612	+		GFF4085	0.61	+0.1
4,097,612	+		GFF4085	0.61	-2.0
4,097,612	+		GFF4085	0.61	+0.6
4,097,612	+		GFF4085	0.61	-1.3
4,097,617	+		GFF4085	0.62	+0.7
4,097,620	-		GFF4085	0.62	+0.6
4,097,620	-		GFF4085	0.62	+0.8
4,097,622	+		GFF4085	0.62	-0.2
4,097,622	+		GFF4085	0.62	-0.0
4,097,625	-		GFF4085	0.62	-0.2
4,097,625	-		GFF4085	0.62	+0.3
4,097,625	-		GFF4085	0.62	-0.5
4,097,625	-		GFF4085	0.62	-0.3
4,097,625	-		GFF4085	0.62	+0.4
4,097,635	+		GFF4085	0.63	-0.4
4,097,635	+		GFF4085	0.63	-1.1
4,097,636	+		GFF4085	0.63	+0.3
4,097,643	-		GFF4085	0.63	-0.8
4,097,644	-		GFF4085	0.64	+0.5
4,097,644	-		GFF4085	0.64	+0.8
4,097,644	-		GFF4085	0.64	-0.5
4,097,649	-		GFF4085	0.64	-1.0
4,097,682	+		GFF4085	0.66	-1.3
4,097,701	-		GFF4085	0.67	+0.5
4,097,701	-		GFF4085	0.67	+0.9
4,097,714	+		GFF4085	0.68	+0.2
4,097,714	+		GFF4085	0.68	+0.6
4,097,721	-		GFF4085	0.69	-1.3
4,097,722	-		GFF4085	0.69	+0.5
4,097,728	+		GFF4085	0.69	+0.1
4,097,753	+		GFF4085	0.71	-1.6
4,097,753	+		GFF4085	0.71	-1.4
4,097,763	+		GFF4085	0.72	-0.4
4,097,763	-		GFF4085	0.72	+0.5
4,097,771	-		GFF4085	0.72	-0.2
4,097,771	-		GFF4085	0.72	+0.3
4,097,771	-		GFF4085	0.72	+0.1
4,097,771	-		GFF4085	0.72	-0.8
4,097,771	-		GFF4085	0.72	-0.2
4,097,776	+		GFF4085	0.73	+1.1
4,097,784	-		GFF4085	0.73	-1.5
4,097,800	-		GFF4085	0.74	-0.0
4,097,809	-		GFF4085	0.75	+0.5
4,097,839	-		GFF4085	0.77	-0.0
4,097,839	-		GFF4085	0.77	-1.5
4,097,841	-		GFF4085	0.77	-0.7
4,097,885	+		GFF4085	0.80	-1.5
4,097,885	+		GFF4085	0.80	-0.4
4,097,893	-		GFF4085	0.81	+0.6
4,097,893	-		GFF4085	0.81	-0.7
4,097,906	-		GFF4085	0.82	-2.3
4,097,953	+		GFF4085	0.85	-0.2
4,097,959	-		GFF4085	0.85	-0.3
4,097,959	-		GFF4085	0.85	-0.6
4,097,964	+		GFF4085	0.86	+1.5
4,097,973	+		GFF4085	0.86	+0.7
4,097,975	+		GFF4085	0.86	+0.1
4,097,976	-		GFF4085	0.86	-1.2
4,097,981	+		GFF4085	0.87	-1.4
4,097,983	-		GFF4085	0.87	-0.6
4,097,983	-		GFF4085	0.87	-2.4
4,097,989	-		GFF4085	0.87	-0.5
4,097,999	-		GFF4085	0.88	+0.2
4,098,012	+		GFF4085	0.89	-0.6
4,098,032	+				+1.8
4,098,032	+				-3.7
4,098,032	+				+1.6
4,098,032	+				-0.6
4,098,032	+				-1.6
4,098,032	+				-0.3
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