Strain Fitness in Sphingobium sp. HT1-2 around GFF4042

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,056,707	+		GFF4040	0.83	+1.1
4,056,707	+		GFF4040	0.83	+0.2
4,056,707	+		GFF4040	0.83	-0.1
4,056,707	+		GFF4040	0.83	-1.6
4,056,715	-		GFF4040	0.84	-0.4
4,056,715	-		GFF4040	0.84	+0.6
4,056,715	-		GFF4040	0.84	+0.5
4,056,715	-		GFF4040	0.84	-0.6
4,056,715	-		GFF4040	0.84	-1.1
4,056,715	-		GFF4040	0.84	-1.8
4,056,725	+		GFF4040	0.86	-1.2
4,056,730	-		GFF4040	0.87	+0.1
4,056,766	+				+0.4
4,056,766	+				-0.4
4,056,766	+				+0.5
4,056,766	+				-0.6
4,056,766	+				+1.3
4,056,766	+				+0.2
4,056,771	+				+0.0
4,056,774	-				+0.4
4,056,774	-				-0.7
4,056,774	-				-0.1
4,056,774	-				-0.1
4,056,774	-				-0.0
4,056,784	-				+0.1
4,056,801	+				-0.4
4,056,802	+				+0.2
4,056,810	-				-0.9
4,057,588	+				-0.7
4,057,588	+				+1.1
4,057,596	-				-0.0
4,057,596	-				+0.1
4,057,596	-				-1.2
4,057,620	+				-2.0
4,057,658	+				-2.5
4,057,688	+				-0.6
4,057,688	+				-1.9
4,057,690	-				-0.8
4,057,696	-				-0.5
4,057,696	-				+1.2
4,057,697	-				-2.1
4,057,705	+				-1.8
4,057,733	+				-1.5
4,057,735	-				+0.2
4,057,735	-				-2.4
4,057,780	+		GFF4042	0.11	+0.4
4,057,788	-		GFF4042	0.13	-0.5
4,057,795	+		GFF4042	0.14	-0.3
4,057,798	-		GFF4042	0.14	-0.2
4,057,798	-		GFF4042	0.14	-0.9
4,057,799	-		GFF4042	0.14	+0.1
4,057,803	-		GFF4042	0.15	+0.3
4,057,803	-		GFF4042	0.15	-0.2
4,057,841	+		GFF4042	0.20	+0.4
4,057,841	+		GFF4042	0.20	+0.9
4,057,847	+		GFF4042	0.21	-0.7
4,057,855	-		GFF4042	0.22	-1.5
4,057,900	+		GFF4042	0.29	-0.8
4,057,908	-		GFF4042	0.30	-0.6
4,057,921	+		GFF4042	0.32	+0.2
4,057,929	-		GFF4042	0.33	-1.4
4,058,002	+		GFF4042	0.44	-0.9
4,058,002	+		GFF4042	0.44	-0.1
4,058,002	+		GFF4042	0.44	+1.1
4,058,003	+		GFF4042	0.44	+0.5
4,058,011	-		GFF4042	0.45	+0.3
4,058,013	+		GFF4042	0.46	-2.2
4,058,022	+		GFF4042	0.47	-0.1
4,058,022	+		GFF4042	0.47	-0.2
4,058,022	+		GFF4042	0.47	-1.6
4,058,030	-		GFF4042	0.48	-0.3
4,058,088	-		GFF4042	0.57	-0.9
4,058,093	+		GFF4042	0.58	-0.0
4,058,094	-		GFF4042	0.58	-0.3
4,058,095	-		GFF4042	0.58	+1.1
4,058,118	+		GFF4042	0.61	+0.9
4,058,118	+		GFF4042	0.61	-2.2
4,058,126	-		GFF4042	0.62	-0.3
4,058,138	+		GFF4042	0.64	-1.6
4,058,162	-		GFF4042	0.68	+0.5
4,058,172	-		GFF4042	0.69	-1.1
4,058,172	-		GFF4042	0.69	+0.8
4,058,176	-		GFF4042	0.70	-0.9
4,058,195	-		GFF4042	0.73	-2.1
4,058,204	+		GFF4042	0.74	+0.8
4,058,204	+		GFF4042	0.74	-0.4
4,058,217	-		GFF4042	0.76	+0.9
4,058,258	-		GFF4042	0.82	+1.0
4,058,258	-		GFF4042	0.82	-2.5
4,058,298	+		GFF4042	0.88	+0.2
4,058,316	-				-1.2
4,058,317	+				+0.9
4,058,319	+				+0.3
4,058,327	+				+0.3
4,058,335	-				-1.0
4,058,340	+				-1.7
4,058,382	+				+0.1
4,058,393	+				-1.0
4,058,423	-				-0.5
4,058,425	+				-0.7
4,058,443	+		GFF4043	0.13	+0.5
4,058,453	+		GFF4043	0.16	-0.9
4,058,453	+		GFF4043	0.16	-1.0
4,058,453	+		GFF4043	0.16	-0.8
4,058,456	-		GFF4043	0.17	-1.3
4,058,458	+		GFF4043	0.18	+1.1
4,058,458	+		GFF4043	0.18	+1.6
4,058,461	-		GFF4043	0.19	+0.6
4,058,461	-		GFF4043	0.19	-0.5
4,058,463	+		GFF4043	0.20	+0.0
4,058,471	-		GFF4043	0.22	-1.4
4,058,471	-		GFF4043	0.22	-0.2
4,058,474	+		GFF4043	0.23	-0.2
4,058,474	+		GFF4043	0.23	+0.1
4,058,474	+		GFF4043	0.23	+1.2
4,058,474	+		GFF4043	0.23	-1.3
4,058,482	-		GFF4043	0.26	-0.5
4,058,484	+		GFF4043	0.27	-1.5
4,058,541	-		GFF4043	0.46	-0.2
4,058,559	+		GFF4043	0.52	+0.9
4,058,559	+		GFF4043	0.52	-1.5
4,058,560	+		GFF4043	0.52	+0.4
4,058,560	+		GFF4043	0.52	+1.4
4,058,560	+		GFF4043	0.52	-0.7
4,058,560	+		GFF4043	0.52	+0.4
4,058,560	+		GFF4043	0.52	-0.9
4,058,560	+		GFF4043	0.52	+0.7
4,058,560	+		GFF4043	0.52	-0.2
4,058,560	+		GFF4043	0.52	-0.3
4,058,560	+		GFF4043	0.52	-1.3
4,058,560	+		GFF4043	0.52	+0.7
4,058,560	+		GFF4043	0.52	-0.2
4,058,560	+		GFF4043	0.52	-0.2
4,058,560	+		GFF4043	0.52	-0.5
4,058,560	+		GFF4043	0.52	-1.0
4,058,560	+		GFF4043	0.52	-1.1
4,058,560	+		GFF4043	0.52	-2.3
4,058,567	-		GFF4043	0.54	-0.3
4,058,568	-		GFF4043	0.55	-1.9
4,058,568	-		GFF4043	0.55	-0.6
4,058,568	-		GFF4043	0.55	+0.7
4,058,568	-		GFF4043	0.55	-1.8
4,058,568	-		GFF4043	0.55	+0.3
4,058,568	-		GFF4043	0.55	+0.2
4,058,568	-		GFF4043	0.55	+0.6
4,058,568	-		GFF4043	0.55	-0.3
4,058,568	-		GFF4043	0.55	+0.2
4,058,568	-		GFF4043	0.55	+1.2
4,058,588	+		GFF4043	0.61	-0.6
4,058,596	+		GFF4043	0.64	-1.3
4,058,604	+		GFF4043	0.67	-0.3
4,058,609	+		GFF4043	0.68	-0.5
4,058,610	-		GFF4043	0.69	+0.5
4,058,611	+		GFF4043	0.69	+0.9
4,058,617	-		GFF4043	0.71	-0.4
4,058,620	+		GFF4043	0.72	-0.9
4,058,677	+				-0.3
4,058,685	+				-1.3
4,058,686	+				-0.4
4,058,686	+				+0.5
4,058,705	-				+0.5
4,058,705	-				-0.2
4,058,712	+				+0.2
4,058,714	+				+0.4
4,058,722	-				+1.4
4,058,722	-				+0.4
4,058,722	-				-0.9
4,058,727	-				-0.4
4,058,727	-				-1.2
4,058,732	+				+0.5
4,058,740	+				+0.2
4,058,769	+				+1.3
4,058,774	+				-0.7
4,058,792	+				-0.5
4,058,799	+				+0.5
4,058,800	-				-2.3
4,058,800	-				+0.5
4,058,832	-		GFF4044	0.22	-2.5
4,058,871	-		GFF4044	0.37	-0.3
4,058,872	+		GFF4044	0.38	-0.5
4,058,872	+		GFF4044	0.38	-1.5
4,058,877	+		GFF4044	0.40	-1.2
4,058,879	+		GFF4044	0.40	-2.2
4,058,880	-		GFF4044	0.41	+0.7
4,058,880	-		GFF4044	0.41	-0.2
4,058,887	-		GFF4044	0.43	-1.6
4,058,887	-		GFF4044	0.43	+1.2
4,058,887	-		GFF4044	0.43	-0.1
4,058,889	+		GFF4044	0.44	-1.2
4,058,892	+		GFF4044	0.45	-1.5
4,058,961	+		GFF4044	0.72	-1.6
4,058,964	-		GFF4044	0.73	-1.8
4,058,966	+		GFF4044	0.74	-0.5
4,058,966	+		GFF4044	0.74	-1.6
4,058,966	+		GFF4044	0.74	-1.3
4,058,969	-		GFF4044	0.75	-0.3
4,058,969	-		GFF4044	0.75	-1.0
4,058,971	+		GFF4044	0.76	-0.9
4,058,971	+		GFF4044	0.76	+0.7
4,058,974	-		GFF4044	0.77	-1.7
4,058,974	-		GFF4044	0.77	-0.4
4,058,979	-		GFF4044	0.79	-0.6
4,058,984	+		GFF4044	0.81	-0.6
4,058,984	+		GFF4044	0.81	-1.1
4,058,984	+		GFF4044	0.81	-1.7
4,058,991	-		GFF4044	0.84	+0.2
4,058,992	-		GFF4044	0.84	-0.8
4,058,992	-		GFF4044	0.84	-0.4
4,058,992	-		GFF4044	0.84	-0.4
4,059,019	+				+1.1
4,059,021	-				+1.0
4,059,038	-				-0.6
4,059,048	+				-0.0
4,059,114	+		GFF4045	0.12	+0.8
4,059,114	+		GFF4045	0.12	-0.9
4,059,115	-		GFF4045	0.12	+0.3
4,059,122	-		GFF4045	0.13	+0.2
4,059,132	+		GFF4045	0.15	+0.1
4,059,133	-		GFF4045	0.15	+0.3
4,059,140	-		GFF4045	0.16	-0.2
4,059,145	+		GFF4045	0.17	-0.1
4,059,150	-		GFF4045	0.17	-0.2
4,059,177	+		GFF4045	0.21	+0.2
4,059,215	-		GFF4045	0.27	+0.0
4,059,217	+		GFF4045	0.27	+0.6
4,059,223	+		GFF4045	0.28	+0.3
4,059,229	+		GFF4045	0.29	-2.9
4,059,231	-		GFF4045	0.29	-0.2
4,059,237	-		GFF4045	0.30	+0.1
4,059,237	-		GFF4045	0.30	+0.0
4,059,237	-		GFF4045	0.30	-0.9
4,059,237	-		GFF4045	0.30	+0.3
4,059,247	+		GFF4045	0.31	-2.3
4,059,250	-		GFF4045	0.32	-1.9
4,059,255	-		GFF4045	0.32	-0.5
4,059,270	-		GFF4045	0.34	+1.8
4,059,281	+		GFF4045	0.36	+0.1
4,059,284	+		GFF4045	0.36	-0.2
4,059,305	+		GFF4045	0.39	-0.9
4,059,333	-		GFF4045	0.43	-0.9
4,059,359	+		GFF4045	0.47	-0.5
4,059,374	-		GFF4045	0.49	+0.7
4,059,374	-		GFF4045	0.49	+0.6
4,059,378	+		GFF4045	0.50	-0.1