Strain Fitness in Sphingobium sp. HT1-2 around GFF402

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF400 and GFF401 are separated by 70 nucleotidesGFF401 and GFF402 are separated by 49 nucleotidesGFF402 and GFF403 are separated by 178 nucleotides GFF400 - Possible NADH oxidoreductase, at 388,700 to 389,812 GFF400 GFF401 - Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11), at 389,883 to 390,494 GFF401 GFF402 - hypothetical protein, at 390,544 to 390,837 GFF402 GFF403 - Aspartate aminotransferase (EC 2.6.1.1), at 391,016 to 392,257 GFF403 Position (kb) 390 391Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 389.553 kb on - strand, within GFF400at 389.558 kb on - strand, within GFF400at 389.576 kb on - strand, within GFF400at 389.614 kb on - strand, within GFF400at 389.659 kb on + strand, within GFF400at 389.660 kb on + strand, within GFF400at 389.678 kb on + strand, within GFF400at 389.688 kb on + strand, within GFF400at 389.691 kb on - strand, within GFF400at 389.696 kb on + strand, within GFF400at 389.696 kb on - strand, within GFF400at 389.699 kb on + strand, within GFF400at 389.715 kb on - strandat 389.715 kb on - strandat 389.715 kb on - strandat 389.715 kb on - strandat 389.720 kb on - strandat 389.722 kb on + strandat 389.727 kb on + strandat 389.727 kb on + strandat 389.732 kb on + strandat 389.732 kb on + strandat 389.732 kb on + strandat 389.732 kb on + strandat 389.735 kb on - strandat 389.742 kb on + strandat 389.778 kb on + strandat 389.785 kb on - strandat 389.785 kb on - strandat 389.797 kb on - strandat 389.836 kb on + strandat 389.842 kb on + strandat 389.842 kb on + strandat 389.844 kb on - strandat 389.844 kb on - strandat 389.850 kb on - strandat 389.866 kb on + strandat 389.897 kb on - strandat 389.899 kb on + strandat 389.907 kb on - strandat 389.913 kb on + strandat 389.926 kb on - strandat 389.931 kb on - strandat 389.931 kb on - strandat 389.932 kb on + strandat 389.932 kb on + strandat 389.932 kb on + strandat 389.933 kb on + strandat 389.940 kb on - strandat 389.940 kb on - strandat 389.941 kb on - strandat 389.947 kb on - strand, within GFF401at 389.951 kb on - strand, within GFF401at 389.953 kb on - strand, within GFF401at 389.960 kb on + strand, within GFF401at 389.960 kb on + strand, within GFF401at 389.960 kb on + strand, within GFF401at 389.960 kb on + strand, within GFF401at 389.968 kb on - strand, within GFF401at 389.972 kb on + strand, within GFF401at 389.980 kb on - strand, within GFF401at 389.994 kb on + strand, within GFF401at 390.004 kb on - strand, within GFF401at 390.025 kb on - strand, within GFF401at 390.026 kb on - strand, within GFF401at 390.028 kb on + strand, within GFF401at 390.030 kb on + strand, within GFF401at 390.034 kb on + strand, within GFF401at 390.068 kb on + strand, within GFF401at 390.069 kb on - strand, within GFF401at 390.076 kb on - strand, within GFF401at 390.094 kb on - strand, within GFF401at 390.094 kb on - strand, within GFF401at 390.094 kb on - strand, within GFF401at 390.097 kb on - strand, within GFF401at 390.099 kb on - strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.116 kb on + strand, within GFF401at 390.116 kb on + strand, within GFF401at 390.116 kb on + strand, within GFF401at 390.119 kb on - strand, within GFF401at 390.119 kb on - strand, within GFF401at 390.124 kb on - strand, within GFF401at 390.124 kb on - strand, within GFF401at 390.124 kb on - strand, within GFF401at 390.129 kb on - strand, within GFF401at 390.134 kb on + strand, within GFF401at 390.135 kb on - strand, within GFF401at 390.144 kb on + strand, within GFF401at 390.216 kb on + strand, within GFF401at 390.224 kb on - strand, within GFF401at 390.248 kb on + strand, within GFF401at 390.253 kb on + strand, within GFF401at 390.256 kb on - strand, within GFF401at 390.356 kb on + strand, within GFF401at 390.366 kb on + strand, within GFF401at 390.366 kb on + strand, within GFF401at 390.372 kb on - strand, within GFF401at 390.389 kb on + strand, within GFF401at 390.394 kb on + strand, within GFF401at 390.394 kb on + strand, within GFF401at 390.394 kb on + strand, within GFF401at 390.402 kb on - strand, within GFF401at 390.497 kb on - strandat 390.518 kb on + strandat 390.518 kb on + strandat 390.525 kb on + strandat 390.533 kb on - strandat 390.559 kb on + strandat 390.595 kb on + strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.603 kb on - strand, within GFF402at 390.627 kb on - strand, within GFF402at 390.679 kb on - strand, within GFF402at 390.679 kb on - strand, within GFF402at 390.746 kb on + strand, within GFF402at 390.746 kb on + strand, within GFF402at 390.746 kb on + strand, within GFF402at 390.756 kb on - strand, within GFF402at 390.760 kb on + strand, within GFF402at 390.761 kb on + strand, within GFF402at 390.766 kb on + strand, within GFF402at 390.768 kb on - strand, within GFF402at 390.768 kb on - strand, within GFF402at 390.771 kb on + strand, within GFF402at 390.771 kb on + strand, within GFF402at 390.771 kb on + strand, within GFF402at 390.779 kb on - strand, within GFF402at 390.790 kb on + strand, within GFF402at 390.798 kb on + strand, within GFF402at 390.894 kb on + strandat 390.895 kb on - strandat 390.902 kb on - strandat 390.958 kb on - strandat 390.958 kb on - strandat 390.983 kb on + strandat 391.032 kb on - strandat 391.044 kb on - strandat 391.049 kb on + strandat 391.059 kb on + strandat 391.059 kb on + strandat 391.059 kb on + strandat 391.059 kb on + strandat 391.059 kb on + strandat 391.067 kb on - strandat 391.067 kb on - strandat 391.067 kb on - strandat 391.067 kb on - strandat 391.067 kb on - strandat 391.067 kb on - strandat 391.069 kb on + strandat 391.069 kb on - strandat 391.072 kb on + strandat 391.077 kb on - strandat 391.080 kb on - strandat 391.101 kb on + strandat 391.101 kb on + strandat 391.109 kb on - strandat 391.120 kb on - strandat 391.125 kb on + strandat 391.134 kb on + strandat 391.174 kb on - strand, within GFF403at 391.211 kb on - strand, within GFF403at 391.211 kb on - strand, within GFF403at 391.261 kb on + strand, within GFF403at 391.271 kb on + strand, within GFF403at 391.271 kb on + strand, within GFF403at 391.279 kb on - strand, within GFF403at 391.279 kb on - strand, within GFF403at 391.279 kb on - strand, within GFF403at 391.279 kb on - strand, within GFF403at 391.284 kb on - strand, within GFF403at 391.287 kb on + strand, within GFF403at 391.287 kb on + strand, within GFF403at 391.287 kb on + strand, within GFF403at 391.289 kb on + strand, within GFF403at 391.289 kb on + strand, within GFF403at 391.302 kb on - strand, within GFF403at 391.332 kb on + strand, within GFF403at 391.340 kb on - strand, within GFF403at 391.364 kb on + strand, within GFF403at 391.372 kb on - strand, within GFF403at 391.392 kb on - strand, within GFF403at 391.399 kb on + strand, within GFF403at 391.412 kb on - strand, within GFF403at 391.418 kb on - strand, within GFF403at 391.425 kb on - strand, within GFF403at 391.453 kb on + strand, within GFF403at 391.453 kb on + strand, within GFF403at 391.456 kb on - strand, within GFF403at 391.459 kb on - strand, within GFF403at 391.461 kb on - strand, within GFF403at 391.466 kb on + strand, within GFF403at 391.499 kb on - strand, within GFF403at 391.501 kb on + strand, within GFF403at 391.502 kb on - strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.519 kb on + strand, within GFF403at 391.519 kb on - strand, within GFF403at 391.540 kb on + strand, within GFF403at 391.540 kb on - strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.548 kb on - strand, within GFF403at 391.550 kb on + strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.558 kb on - strand, within GFF403at 391.558 kb on - strand, within GFF403at 391.573 kb on - strand, within GFF403at 391.584 kb on + strand, within GFF403at 391.589 kb on - strand, within GFF403at 391.591 kb on - strand, within GFF403at 391.592 kb on - strand, within GFF403at 391.592 kb on - strand, within GFF403at 391.619 kb on - strand, within GFF403at 391.619 kb on - strand, within GFF403at 391.623 kb on - strand, within GFF403at 391.637 kb on + strand, within GFF403at 391.637 kb on + strand, within GFF403at 391.644 kb on + strand, within GFF403at 391.645 kb on - strand, within GFF403at 391.652 kb on - strand, within GFF403at 391.652 kb on - strand, within GFF403at 391.656 kb on + strand, within GFF403at 391.657 kb on - strand, within GFF403at 391.686 kb on + strand, within GFF403at 391.748 kb on + strand, within GFF403at 391.751 kb on - strand, within GFF403at 391.753 kb on + strand, within GFF403at 391.753 kb on + strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.789 kb on - strand, within GFF403at 391.798 kb on + strand, within GFF403at 391.804 kb on - strand, within GFF403at 391.806 kb on - strand, within GFF403at 391.820 kb on + strand, within GFF403at 391.836 kb on - strand, within GFF403

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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389,553 - GFF400 0.77 -0.3
389,558 - GFF400 0.77 -1.0
389,576 - GFF400 0.79 -1.6
389,614 - GFF400 0.82 +0.9
389,659 + GFF400 0.86 -1.1
389,660 + GFF400 0.86 -1.1
389,678 + GFF400 0.88 -0.1
389,688 + GFF400 0.89 +0.2
389,691 - GFF400 0.89 -0.1
389,696 + GFF400 0.89 +0.2
389,696 - GFF400 0.89 +1.3
389,699 + GFF400 0.90 -2.0
389,715 - +0.6
389,715 - -0.4
389,715 - -0.4
389,715 - +0.2
389,720 - -2.1
389,722 + -2.2
389,727 + +0.5
389,727 + +0.7
389,732 + +1.1
389,732 + +1.3
389,732 + -0.7
389,732 + +2.8
389,735 - -0.7
389,742 + +1.1
389,778 + -1.6
389,785 - -0.3
389,785 - +0.3
389,797 - -1.4
389,836 + +0.9
389,842 + +0.8
389,842 + -0.6
389,844 - +0.3
389,844 - -0.1
389,850 - -0.3
389,866 + +0.4
389,897 - -0.2
389,899 + -1.3
389,907 - -1.1
389,913 + -0.1
389,926 - +0.0
389,931 - -1.2
389,931 - -0.5
389,932 + -1.4
389,932 + +0.7
389,932 + -0.6
389,933 + -0.2
389,940 - -0.9
389,940 - -0.1
389,941 - +0.0
389,947 - GFF401 0.10 -0.0
389,951 - GFF401 0.11 -1.9
389,953 - GFF401 0.11 -0.3
389,960 + GFF401 0.13 +1.3
389,960 + GFF401 0.13 -1.3
389,960 + GFF401 0.13 -0.1
389,960 + GFF401 0.13 +1.0
389,968 - GFF401 0.14 +0.0
389,972 + GFF401 0.15 +1.3
389,980 - GFF401 0.16 +0.9
389,994 + GFF401 0.18 +0.5
390,004 - GFF401 0.20 -1.5
390,025 - GFF401 0.23 -0.1
390,026 - GFF401 0.23 +0.4
390,028 + GFF401 0.24 -0.2
390,030 + GFF401 0.24 -0.5
390,034 + GFF401 0.25 +0.7
390,068 + GFF401 0.30 +0.8
390,069 - GFF401 0.30 -0.7
390,076 - GFF401 0.32 +1.2
390,094 - GFF401 0.34 +0.0
390,094 - GFF401 0.34 -1.3
390,094 - GFF401 0.34 +0.6
390,097 - GFF401 0.35 -1.9
390,099 - GFF401 0.35 +0.5
390,106 + GFF401 0.36 -0.4
390,106 + GFF401 0.36 -1.1
390,106 + GFF401 0.36 +0.7
390,106 + GFF401 0.36 -1.0
390,106 + GFF401 0.36 -2.3
390,106 + GFF401 0.36 +0.2
390,106 + GFF401 0.36 +0.8
390,106 + GFF401 0.36 -1.9
390,106 + GFF401 0.36 +0.7
390,106 + GFF401 0.36 -0.4
390,106 + GFF401 0.36 -0.8
390,106 + GFF401 0.36 +0.2
390,106 + GFF401 0.36 +0.2
390,106 + GFF401 0.36 +0.3
390,106 + GFF401 0.36 +0.1
390,106 + GFF401 0.36 -0.1
390,106 + GFF401 0.36 -1.7
390,106 + GFF401 0.36 -1.1
390,114 - GFF401 0.38 -0.3
390,114 - GFF401 0.38 -2.9
390,114 - GFF401 0.38 +0.1
390,114 - GFF401 0.38 -2.1
390,114 - GFF401 0.38 +0.5
390,114 - GFF401 0.38 +0.3
390,114 - GFF401 0.38 +0.2
390,114 - GFF401 0.38 +0.6
390,114 - GFF401 0.38 +0.2
390,114 - GFF401 0.38 -0.4
390,114 - GFF401 0.38 +0.6
390,114 - GFF401 0.38 +0.7
390,114 - GFF401 0.38 +1.5
390,114 - GFF401 0.38 -0.1
390,114 - GFF401 0.38 -1.2
390,114 - GFF401 0.38 +1.2
390,114 - GFF401 0.38 -1.9
390,114 - GFF401 0.38 +0.1
390,114 - GFF401 0.38 -1.2
390,114 - GFF401 0.38 -0.9
390,116 + GFF401 0.38 +0.4
390,116 + GFF401 0.38 -0.7
390,116 + GFF401 0.38 +1.2
390,119 - GFF401 0.39 -0.9
390,119 - GFF401 0.39 -1.1
390,124 - GFF401 0.39 +0.4
390,124 - GFF401 0.39 +0.0
390,124 - GFF401 0.39 -1.1
390,129 - GFF401 0.40 -1.8
390,134 + GFF401 0.41 +1.3
390,135 - GFF401 0.41 -0.3
390,144 + GFF401 0.43 -0.8
390,216 + GFF401 0.54 -0.7
390,224 - GFF401 0.56 +0.1
390,248 + GFF401 0.60 -0.5
390,253 + GFF401 0.60 +0.6
390,256 - GFF401 0.61 +0.3
390,356 + GFF401 0.77 +0.7
390,366 + GFF401 0.79 +0.0
390,366 + GFF401 0.79 +0.8
390,372 - GFF401 0.80 -0.4
390,389 + GFF401 0.83 +0.7
390,394 + GFF401 0.83 -0.4
390,394 + GFF401 0.83 -2.1
390,394 + GFF401 0.83 -0.1
390,402 - GFF401 0.85 -0.2
390,497 - -0.5
390,518 + -1.4
390,518 + +0.4
390,525 + +0.4
390,533 - +0.3
390,559 + -1.3
390,595 + GFF402 0.17 +0.4
390,598 - GFF402 0.18 -1.3
390,598 - GFF402 0.18 -1.3
390,598 - GFF402 0.18 -1.1
390,598 - GFF402 0.18 -0.6
390,598 - GFF402 0.18 +0.8
390,603 - GFF402 0.20 +0.7
390,627 - GFF402 0.28 -0.6
390,679 - GFF402 0.46 -1.7
390,679 - GFF402 0.46 -3.1
390,746 + GFF402 0.69 +0.5
390,746 + GFF402 0.69 -1.9
390,746 + GFF402 0.69 -2.4
390,756 - GFF402 0.72 -1.9
390,760 + GFF402 0.73 -0.9
390,761 + GFF402 0.74 +0.9
390,766 + GFF402 0.76 -2.1
390,768 - GFF402 0.76 +0.0
390,768 - GFF402 0.76 +0.1
390,771 + GFF402 0.77 -2.4
390,771 + GFF402 0.77 -0.1
390,771 + GFF402 0.77 -2.5
390,779 - GFF402 0.80 -1.1
390,790 + GFF402 0.84 -2.2
390,798 + GFF402 0.86 -0.3
390,894 + -1.3
390,895 - +0.3
390,902 - -0.5
390,958 - +0.4
390,958 - +0.3
390,983 + +0.4
391,032 - -1.4
391,044 - -1.3
391,049 + -1.4
391,059 + -2.1
391,059 + -2.9
391,059 + -1.4
391,059 + +0.7
391,059 + -1.5
391,067 - -0.6
391,067 - -0.1
391,067 - -1.5
391,067 - -2.0
391,067 - -1.4
391,067 - -1.4
391,069 + -2.3
391,069 - -2.5
391,072 + -1.3
391,077 - -1.7
391,080 - -1.3
391,101 + -1.0
391,101 + -1.6
391,109 - -2.4
391,120 - -2.5
391,125 + -0.7
391,134 + -1.2
391,174 - GFF403 0.13 -1.1
391,211 - GFF403 0.16 -1.7
391,211 - GFF403 0.16 -1.2
391,261 + GFF403 0.20 -2.9
391,271 + GFF403 0.21 -2.7
391,271 + GFF403 0.21 -2.5
391,279 - GFF403 0.21 -2.1
391,279 - GFF403 0.21 -2.8
391,279 - GFF403 0.21 -2.6
391,279 - GFF403 0.21 -1.6
391,284 - GFF403 0.22 -1.4
391,287 + GFF403 0.22 -2.2
391,287 + GFF403 0.22 -1.6
391,287 + GFF403 0.22 -1.8
391,289 + GFF403 0.22 -2.1
391,289 + GFF403 0.22 -1.6
391,302 - GFF403 0.23 -1.9
391,332 + GFF403 0.25 -2.4
391,340 - GFF403 0.26 -1.7
391,364 + GFF403 0.28 -1.2
391,372 - GFF403 0.29 +0.5
391,392 - GFF403 0.30 -1.3
391,399 + GFF403 0.31 -2.1
391,412 - GFF403 0.32 -2.1
391,418 - GFF403 0.32 -1.2
391,425 - GFF403 0.33 -1.4
391,453 + GFF403 0.35 -1.2
391,453 + GFF403 0.35 -1.6
391,456 - GFF403 0.35 -1.7
391,459 - GFF403 0.36 -1.9
391,461 - GFF403 0.36 -0.3
391,466 + GFF403 0.36 -1.6
391,499 - GFF403 0.39 -1.6
391,501 + GFF403 0.39 -2.0
391,502 - GFF403 0.39 -2.3
391,511 + GFF403 0.40 -2.8
391,511 + GFF403 0.40 -1.3
391,511 + GFF403 0.40 -2.4
391,519 + GFF403 0.40 -3.0
391,519 - GFF403 0.40 -2.1
391,540 + GFF403 0.42 -2.2
391,540 - GFF403 0.42 -1.5
391,545 + GFF403 0.43 -3.0
391,545 + GFF403 0.43 -1.7
391,545 + GFF403 0.43 -2.9
391,545 + GFF403 0.43 -1.5
391,545 + GFF403 0.43 -1.3
391,548 - GFF403 0.43 -2.3
391,550 + GFF403 0.43 -0.6
391,553 - GFF403 0.43 -2.2
391,553 - GFF403 0.43 -2.7
391,553 - GFF403 0.43 -2.6
391,558 - GFF403 0.44 -1.0
391,558 - GFF403 0.44 -2.4
391,573 - GFF403 0.45 -1.7
391,584 + GFF403 0.46 +0.8
391,589 - GFF403 0.46 -2.4
391,591 - GFF403 0.46 -2.1
391,592 - GFF403 0.46 -1.2
391,592 - GFF403 0.46 +0.3
391,619 - GFF403 0.49 -0.7
391,619 - GFF403 0.49 -1.8
391,623 - GFF403 0.49 -2.5
391,637 + GFF403 0.50 -2.4
391,637 + GFF403 0.50 -1.6
391,644 + GFF403 0.51 -1.2
391,645 - GFF403 0.51 -1.2
391,652 - GFF403 0.51 -3.3
391,652 - GFF403 0.51 -1.5
391,656 + GFF403 0.52 -2.1
391,657 - GFF403 0.52 -3.0
391,686 + GFF403 0.54 -1.3
391,748 + GFF403 0.59 -0.4
391,751 - GFF403 0.59 -2.2
391,753 + GFF403 0.59 -1.7
391,753 + GFF403 0.59 +0.2
391,761 - GFF403 0.60 +1.0
391,761 - GFF403 0.60 -1.3
391,761 - GFF403 0.60 -2.2
391,761 - GFF403 0.60 -2.6
391,761 - GFF403 0.60 -1.8
391,761 - GFF403 0.60 -2.1
391,789 - GFF403 0.62 -2.0
391,798 + GFF403 0.63 -2.0
391,804 - GFF403 0.63 -3.4
391,806 - GFF403 0.64 -1.8
391,820 + GFF403 0.65 -1.5
391,836 - GFF403 0.66 -1.5

Or see this region's nucleotide sequence