Strain Fitness in Sphingobium sp. HT1-2 around GFF3907

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,942,740	-		GFF3906	0.49	+0.5
3,942,743	+		GFF3906	0.49	-0.4
3,942,772	-		GFF3906	0.50	-0.4
3,942,780	+		GFF3906	0.51	-1.9
3,942,787	+		GFF3906	0.51	-0.3
3,942,787	+		GFF3906	0.51	-0.2
3,942,787	+		GFF3906	0.51	-0.4
3,942,787	+		GFF3906	0.51	-0.6
3,942,787	+		GFF3906	0.51	-0.7
3,942,795	-		GFF3906	0.52	+0.5
3,942,795	-		GFF3906	0.52	-1.6
3,942,795	-		GFF3906	0.52	-0.7
3,942,795	-		GFF3906	0.52	+0.0
3,942,795	-		GFF3906	0.52	-1.0
3,942,795	-		GFF3906	0.52	-2.2
3,942,795	-		GFF3906	0.52	+1.2
3,942,795	-		GFF3906	0.52	-0.8
3,942,795	-		GFF3906	0.52	-0.4
3,942,797	+		GFF3906	0.52	+0.4
3,942,797	+		GFF3906	0.52	-1.9
3,942,797	+		GFF3906	0.52	-0.3
3,942,797	+		GFF3906	0.52	-1.7
3,942,797	+		GFF3906	0.52	-0.0
3,942,797	+		GFF3906	0.52	-0.4
3,942,805	-		GFF3906	0.52	+0.3
3,942,805	-		GFF3906	0.52	+0.0
3,942,816	+		GFF3906	0.53	-1.5
3,942,816	+		GFF3906	0.53	+1.0
3,942,819	-		GFF3906	0.53	-1.1
3,942,824	-		GFF3906	0.53	+0.0
3,942,827	+		GFF3906	0.53	-1.1
3,942,848	+		GFF3906	0.55	-0.9
3,942,853	+		GFF3906	0.55	-1.2
3,942,857	-		GFF3906	0.55	-1.6
3,942,869	-		GFF3906	0.56	-0.4
3,942,871	-		GFF3906	0.56	-1.7
3,942,884	-		GFF3906	0.57	+0.1
3,942,997	+		GFF3906	0.63	-0.6
3,943,005	+		GFF3906	0.63	-0.8
3,943,010	+		GFF3906	0.64	+0.3
3,943,036	-		GFF3906	0.65	-1.4
3,943,038	-		GFF3906	0.65	-1.7
3,943,039	+		GFF3906	0.65	-0.8
3,943,040	-		GFF3906	0.65	-0.1
3,943,053	-		GFF3906	0.66	+0.6
3,943,055	+		GFF3906	0.66	+0.3
3,943,062	+		GFF3906	0.66	+0.2
3,943,072	+		GFF3906	0.67	-1.2
3,943,072	+		GFF3906	0.67	-0.8
3,943,080	+		GFF3906	0.67	-2.1
3,943,080	+		GFF3906	0.67	+0.9
3,943,080	-		GFF3906	0.67	+0.4
3,943,080	-		GFF3906	0.67	+0.1
3,943,083	-		GFF3906	0.68	+0.5
3,943,085	+		GFF3906	0.68	-0.6
3,943,088	-		GFF3906	0.68	-0.2
3,943,098	-		GFF3906	0.68	-0.4
3,943,125	-		GFF3906	0.70	-0.5
3,943,127	+		GFF3906	0.70	-0.1
3,943,146	+		GFF3906	0.71	+1.1
3,943,146	+		GFF3906	0.71	+1.3
3,943,146	+		GFF3906	0.71	+0.3
3,943,149	+		GFF3906	0.71	+0.1
3,943,151	+		GFF3906	0.71	-0.7
3,943,154	-		GFF3906	0.72	-0.2
3,943,157	-		GFF3906	0.72	-0.6
3,943,157	-		GFF3906	0.72	-2.6
3,943,157	-		GFF3906	0.72	-3.1
3,943,157	-		GFF3906	0.72	+0.4
3,943,183	+		GFF3906	0.73	-0.4
3,943,192	+		GFF3906	0.74	-0.6
3,943,192	+		GFF3906	0.74	-1.4
3,943,200	-		GFF3906	0.74	-2.6
3,943,223	-		GFF3906	0.75	+0.7
3,943,239	+		GFF3906	0.76	-0.9
3,943,250	-		GFF3906	0.77	-0.3
3,943,261	+		GFF3906	0.77	-0.2
3,943,269	-		GFF3906	0.78	+0.1
3,943,269	-		GFF3906	0.78	-1.6
3,943,288	-		GFF3906	0.79	-0.1
3,943,288	-		GFF3906	0.79	-1.2
3,943,288	-		GFF3906	0.79	+0.1
3,943,298	-		GFF3906	0.80	+0.8
3,943,298	-		GFF3906	0.80	-0.4
3,943,332	-		GFF3906	0.81	+0.5
3,943,334	-		GFF3906	0.82	+0.6
3,943,363	-		GFF3906	0.83	+0.7
3,943,388	+		GFF3906	0.84	+0.3
3,943,405	+		GFF3906	0.85	-0.2
3,943,415	+		GFF3906	0.86	-2.1
3,943,439	+		GFF3906	0.87	-1.1
3,943,467	-		GFF3906	0.89	-0.3
3,943,482	-		GFF3906	0.90	+0.2
3,943,484	+		GFF3906	0.90	+1.0
3,943,492	+				-1.5
3,943,500	-				-1.9
3,943,502	-				-0.8
3,943,502	-				-0.2
3,943,508	+				-0.2
3,943,508	+				+1.3
3,943,512	-				+0.1
3,943,516	-				-1.7
3,943,516	-				-1.4
3,943,516	-				+0.1
3,943,519	+				-0.5
3,943,527	-				-0.4
3,943,561	+				-0.5
3,943,571	+				-0.9
3,943,571	+				+0.7
3,943,571	+				-1.0
3,943,571	+				-1.5
3,943,571	+				+0.1
3,943,571	+				-0.3
3,943,571	+				-1.0
3,943,571	-				+0.6
3,943,579	-				-2.1
3,943,579	-				+0.8
3,943,579	-				+1.1
3,943,579	-				+0.2
3,943,579	-				+0.6
3,943,579	-				-0.7
3,943,585	-				-1.1
3,943,592	+				-1.3
3,943,597	+				-0.2
3,943,607	+				-0.5
3,943,615	-				+0.6
3,943,615	-				+0.3
3,943,617	+				+0.4
3,943,622	+				-0.0
3,943,624	+				-1.8
3,943,625	-				+1.2
3,943,650	-				-0.4
3,943,665	-				-0.0
3,943,679	+				-1.2
3,943,681	-				-0.5
3,943,682	-				-1.9
3,943,686	+				+0.3
3,943,687	-				-1.9
3,943,687	-				+0.5
3,943,691	-				+0.7
3,943,734	+				-0.6
3,943,772	-				-1.1
3,943,779	+				+0.1
3,943,784	+				-0.3
3,943,784	+				+0.2
3,943,784	+				+0.9
3,943,784	+				-0.9
3,943,784	+				+0.2
3,943,784	+				-0.9
3,943,786	+				+0.8
3,943,792	-				-0.2
3,943,792	-				-0.1
3,943,792	-				+0.6
3,943,792	-				-0.4
3,943,792	-				+1.1
3,943,792	-				+0.2
3,943,792	-				+0.4
3,943,802	-				-1.6
3,943,816	-				-1.4
3,943,834	-				-0.4
3,943,843	-				-1.4
3,943,881	-		GFF3907	0.13	-0.4
3,943,882	-		GFF3907	0.13	-0.7
3,943,896	+		GFF3907	0.14	-1.3
3,943,917	+		GFF3907	0.16	-1.4
3,943,921	-		GFF3907	0.16	+0.8
3,943,923	+		GFF3907	0.16	-0.4
3,943,931	-		GFF3907	0.17	+1.2
3,943,940	+		GFF3907	0.18	-0.2
3,943,960	-		GFF3907	0.19	-1.1
3,943,966	-		GFF3907	0.20	-0.7
3,943,973	-		GFF3907	0.21	-0.6
3,943,987	+		GFF3907	0.22	-0.2
3,943,988	+		GFF3907	0.22	-1.3
3,943,998	+		GFF3907	0.23	+0.1
3,944,005	+		GFF3907	0.23	-0.4
3,944,013	+		GFF3907	0.24	-0.3
3,944,014	-		GFF3907	0.24	-0.3
3,944,056	+		GFF3907	0.28	+0.6
3,944,058	-		GFF3907	0.28	-0.5
3,944,078	+		GFF3907	0.29	-0.4
3,944,078	-		GFF3907	0.29	-0.2
3,944,086	-		GFF3907	0.30	+0.4
3,944,092	-		GFF3907	0.31	+0.7
3,944,139	-		GFF3907	0.35	-0.7
3,944,142	+		GFF3907	0.35	-0.1
3,944,142	-		GFF3907	0.35	+1.1
3,944,171	+		GFF3907	0.37	-1.3
3,944,183	+		GFF3907	0.38	-1.1
3,944,205	+		GFF3907	0.40	-0.1
3,944,257	+		GFF3907	0.45	-1.5
3,944,265	-		GFF3907	0.45	+0.6
3,944,281	+		GFF3907	0.47	+0.8
3,944,289	-		GFF3907	0.47	-3.3
3,944,292	+		GFF3907	0.48	+1.5
3,944,311	-		GFF3907	0.49	-0.6
3,944,311	-		GFF3907	0.49	-1.1
3,944,323	-		GFF3907	0.50	+0.4
3,944,328	-		GFF3907	0.51	+1.2
3,944,348	+		GFF3907	0.53	-0.3
3,944,363	+		GFF3907	0.54	-1.1
3,944,382	-		GFF3907	0.55	-0.1
3,944,384	+		GFF3907	0.56	+1.6
3,944,384	+		GFF3907	0.56	+0.6
3,944,384	+		GFF3907	0.56	+0.7
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	-2.7
3,944,384	+		GFF3907	0.56	+0.4
3,944,384	+		GFF3907	0.56	-0.4
3,944,384	+		GFF3907	0.56	+0.1
3,944,384	+		GFF3907	0.56	-0.2
3,944,384	+		GFF3907	0.56	-0.7
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	-0.7
3,944,384	+		GFF3907	0.56	-0.5
3,944,384	+		GFF3907	0.56	+0.8
3,944,384	+		GFF3907	0.56	-0.4
3,944,384	+		GFF3907	0.56	+0.4
3,944,384	+		GFF3907	0.56	-1.9
3,944,384	+		GFF3907	0.56	-2.5
3,944,384	+		GFF3907	0.56	+0.6
3,944,384	+		GFF3907	0.56	+0.7
3,944,384	+		GFF3907	0.56	+0.3
3,944,384	+		GFF3907	0.56	-0.2
3,944,384	+		GFF3907	0.56	-0.5
3,944,384	+		GFF3907	0.56	+1.0
3,944,384	+		GFF3907	0.56	-2.2
3,944,384	+		GFF3907	0.56	+1.0
3,944,384	+		GFF3907	0.56	-1.4
3,944,384	+		GFF3907	0.56	+0.1
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	-2.0
3,944,384	+		GFF3907	0.56	-0.0
3,944,392	-		GFF3907	0.56	+0.3
3,944,392	-		GFF3907	0.56	+1.0
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	-0.2
3,944,392	-		GFF3907	0.56	-0.0
3,944,392	-		GFF3907	0.56	-0.2
3,944,392	-		GFF3907	0.56	+0.3
3,944,392	-		GFF3907	0.56	+0.9
3,944,392	-		GFF3907	0.56	+0.4
3,944,392	-		GFF3907	0.56	-1.4
3,944,392	-		GFF3907	0.56	+0.2
3,944,392	-		GFF3907	0.56	-0.7
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	+0.7
3,944,392	-		GFF3907	0.56	-1.8
3,944,392	-		GFF3907	0.56	-0.4
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	+0.5
3,944,392	-		GFF3907	0.56	+0.8
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	-0.6
3,944,392	-		GFF3907	0.56	-2.0
3,944,392	-		GFF3907	0.56	+1.0
3,944,392	-		GFF3907	0.56	+0.7
3,944,392	-		GFF3907	0.56	-1.0
3,944,392	-		GFF3907	0.56	+0.2
3,944,392	-		GFF3907	0.56	+0.4
3,944,392	-		GFF3907	0.56	-1.3
3,944,392	-		GFF3907	0.56	+0.9
3,944,392	-		GFF3907	0.56	-0.9
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	-1.4
3,944,392	-		GFF3907	0.56	+0.1
3,944,392	-		GFF3907	0.56	-0.9
3,944,392	-		GFF3907	0.56	+0.5
3,944,392	-		GFF3907	0.56	+0.5
3,944,392	-		GFF3907	0.56	+0.1
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	-0.6
3,944,397	-		GFF3907	0.57	+0.3
3,944,411	+		GFF3907	0.58	+1.4
3,944,411	-		GFF3907	0.58	-0.8
3,944,416	-		GFF3907	0.58	+0.4
3,944,421	+		GFF3907	0.59	-0.0
3,944,430	+		GFF3907	0.60	-0.3
3,944,438	-		GFF3907	0.60	+1.6
3,944,443	-		GFF3907	0.61	+0.7
3,944,443	-		GFF3907	0.61	-1.8
3,944,453	-		GFF3907	0.61	+0.3
3,944,453	-		GFF3907	0.61	-0.3
3,944,453	-		GFF3907	0.61	-2.6
3,944,459	+		GFF3907	0.62	+0.6
3,944,459	+		GFF3907	0.62	-1.6
3,944,485	+		GFF3907	0.64	+0.2
3,944,511	-		GFF3907	0.66	+0.5
3,944,553	+		GFF3907	0.70	-0.3
3,944,553	+		GFF3907	0.70	-0.8
3,944,560	-		GFF3907	0.71	-0.5
3,944,560	-		GFF3907	0.71	+0.2
3,944,560	-		GFF3907	0.71	+1.0
3,944,561	-		GFF3907	0.71	-0.0
3,944,616	+		GFF3907	0.75	+0.9
3,944,621	+		GFF3907	0.76	-0.2
3,944,621	-		GFF3907	0.76	+0.8
3,944,637	+		GFF3907	0.77	+0.6
3,944,645	-		GFF3907	0.78	-0.1
3,944,645	-		GFF3907	0.78	+0.5
3,944,671	+		GFF3907	0.80	+0.2
3,944,679	-		GFF3907	0.81	+0.4
3,944,679	-		GFF3907	0.81	-0.9
3,944,679	-		GFF3907	0.81	-0.9
3,944,693	+		GFF3907	0.82	+1.0
3,944,693	+		GFF3907	0.82	-1.6
3,944,693	+		GFF3907	0.82	-0.3
3,944,696	-		GFF3907	0.82	+1.0
3,944,703	+		GFF3907	0.83	-1.9
3,944,703	+		GFF3907	0.83	+0.1
3,944,703	+		GFF3907	0.83	+0.2
3,944,706	-		GFF3907	0.83	+0.6
3,944,711	-		GFF3907	0.83	-0.7
3,944,719	-		GFF3907	0.84	+0.5
3,944,726	-		GFF3907	0.85	-1.4
3,944,769	-		GFF3907	0.88	-0.4
3,944,777	+		GFF3907	0.89	+0.3
3,944,777	+		GFF3907	0.89	-1.1
3,944,785	-		GFF3907	0.90	-0.0
3,944,785	-		GFF3907	0.90	-0.2
3,944,786	-		GFF3907	0.90	-1.8
3,944,810	-				-0.2
3,944,835	+				+0.3
3,944,849	+				-0.3
3,944,854	+				-0.6
3,944,944	+				-0.4
3,944,944	+				+0.6
3,944,944	+				-2.4
3,944,944	+				-2.5
3,944,944	+				+0.4
3,944,944	+				-2.5
3,944,952	-				+0.1
3,944,952	-				+0.9
3,944,952	-				+0.8
3,944,967	+				-0.1
3,944,967	-				+0.3
3,944,975	+				+0.1
3,944,978	+				-1.1
3,944,985	+				+1.3
3,944,993	-				+0.1
3,944,993	-				+0.6
3,944,995	+				-0.8
3,944,996	+				-0.8
3,945,003	-				+1.8
3,945,008	-				+0.7
3,945,008	-				-0.8