Strain Fitness in Sphingobium sp. HT1-2 around GFF39

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
28,876	+				-0.3
28,984	-				+0.1
29,001	+				+0.6
29,001	+				-0.2
29,001	+				-1.4
29,001	+				+1.0
29,001	+				-1.2
29,008	-				-0.6
29,009	-				-1.7
29,009	-				+0.6
29,009	-				-0.6
29,009	-				-0.2
29,009	-				-0.1
29,009	-				+0.6
29,036	+				+0.6
29,036	+				+0.0
29,036	+				-2.0
29,036	+				-1.5
29,036	+				-1.3
29,044	-				+0.7
29,044	-				-0.1
29,046	+				-1.0
29,051	-				-1.4
29,054	-				+0.2
29,054	-				-0.4
29,088	-		GFF38	0.12	+0.5
29,093	+		GFF38	0.13	-2.1
29,101	-		GFF38	0.14	-0.2
29,105	+		GFF38	0.14	-0.6
29,114	-		GFF38	0.15	+0.9
29,131	-		GFF38	0.17	+1.3
29,133	+		GFF38	0.17	-1.1
29,137	+		GFF38	0.18	-1.9
29,145	+		GFF38	0.19	+0.0
29,151	+		GFF38	0.19	-2.8
29,153	+		GFF38	0.20	-0.2
29,153	-		GFF38	0.20	-1.6
29,168	+		GFF38	0.21	+1.2
29,171	-		GFF38	0.22	-0.0
29,204	-		GFF38	0.26	-0.8
29,210	-		GFF38	0.26	+0.1
29,212	+		GFF38	0.26	-1.5
29,229	+		GFF38	0.28	+0.3
29,286	+		GFF38	0.35	+0.6
29,286	+		GFF38	0.35	-1.6
29,291	+		GFF38	0.36	+1.0
29,291	+		GFF38	0.36	+0.6
29,337	+		GFF38	0.41	-0.8
29,350	-		GFF38	0.43	+0.3
29,382	+		GFF38	0.46	-0.0
29,390	-		GFF38	0.47	-0.2
29,390	-		GFF38	0.47	+0.1
29,390	-		GFF38	0.47	-0.2
29,417	-		GFF38	0.50	-1.6
29,457	+		GFF38	0.55	+0.6
29,457	+		GFF38	0.55	+0.6
29,465	-		GFF38	0.56	-1.7
29,465	-		GFF38	0.56	+0.0
29,465	-		GFF38	0.56	-1.5
29,488	+		GFF38	0.59	-0.4
29,494	-		GFF38	0.59	-0.5
29,496	+		GFF38	0.60	+0.0
29,496	+		GFF38	0.60	-1.1
29,496	-		GFF38	0.60	+0.0
29,504	-		GFF38	0.60	-0.4
29,506	+		GFF38	0.61	+0.8
29,514	-		GFF38	0.62	-0.3
29,521	+		GFF38	0.62	-0.8
29,531	+		GFF38	0.64	+1.2
29,542	+		GFF38	0.65	-0.9
29,550	-		GFF38	0.66	-0.4
29,552	+		GFF38	0.66	-0.4
29,577	+		GFF38	0.69	+0.5
29,585	-		GFF38	0.70	-0.7
29,596	+		GFF38	0.71	-0.7
29,596	+		GFF38	0.71	+1.2
29,596	+		GFF38	0.71	-1.3
29,596	+		GFF38	0.71	+1.0
29,596	+		GFF38	0.71	-0.2
29,596	+		GFF38	0.71	+0.5
29,604	-		GFF38	0.72	-1.0
29,604	-		GFF38	0.72	-1.0
29,618	+		GFF38	0.74	+1.1
29,618	+		GFF38	0.74	-0.0
29,618	+		GFF38	0.74	-0.8
29,618	+		GFF38	0.74	+0.1
29,618	+		GFF38	0.74	+1.0
29,620	+		GFF38	0.74	+0.0
29,626	-		GFF38	0.75	+1.5
29,626	-		GFF38	0.75	-0.8
29,630	+		GFF38	0.75	-0.7
29,635	+		GFF38	0.76	-0.6
29,642	+		GFF38	0.77	-0.1
29,642	+		GFF38	0.77	-0.4
29,651	+		GFF38	0.78	+1.1
29,653	-		GFF38	0.78	-2.0
29,658	-		GFF38	0.78	-1.4
29,658	-		GFF38	0.78	+0.3
29,659	-		GFF38	0.79	-0.7
29,670	+		GFF38	0.80	+0.2
29,670	+		GFF38	0.80	+0.5
29,670	+		GFF38	0.80	-0.4
29,676	-		GFF38	0.81	-1.0
29,676	-		GFF38	0.81	-0.4
29,678	-		GFF38	0.81	-0.6
29,721	+		GFF38	0.86	-0.8
29,731	+		GFF38	0.87	-0.0
29,731	+		GFF38	0.87	-0.4
29,744	-		GFF38	0.88	+0.2
29,750	-		GFF38	0.89	-0.2
29,767	-				+0.1
29,769	+				+0.2
29,775	+				-0.0
29,777	-				-0.7
29,778	-				+0.4
29,783	-				-0.1
29,783	-				+0.5
29,834	+				-1.1
29,932	-				-0.3
29,940	-				-1.4
29,942	-				+0.7
29,944	+				-0.0
29,949	+				+0.0
29,950	-				+0.9
29,952	-				+0.3
30,017	+		GFF39	0.14	+0.1
30,017	+		GFF39	0.14	-2.2
30,035	+		GFF39	0.15	+1.1
30,048	-		GFF39	0.16	-1.4
30,058	+		GFF39	0.17	+0.8
30,095	+		GFF39	0.19	+0.0
30,095	+		GFF39	0.19	+0.8
30,095	+		GFF39	0.19	-1.2
30,097	+		GFF39	0.20	-0.0
30,103	-		GFF39	0.20	-0.0
30,103	-		GFF39	0.20	-0.0
30,103	-		GFF39	0.20	+0.9
30,105	-		GFF39	0.20	+0.7
30,109	+		GFF39	0.21	-1.2
30,111	+		GFF39	0.21	+0.4
30,117	+		GFF39	0.21	+0.1
30,125	-		GFF39	0.22	+0.8
30,128	+		GFF39	0.22	+0.1
30,149	+		GFF39	0.24	+0.6
30,158	+		GFF39	0.24	+0.9
30,163	+		GFF39	0.25	+0.2
30,163	+		GFF39	0.25	-0.2
30,163	+		GFF39	0.25	-1.2
30,163	+		GFF39	0.25	+0.5
30,163	+		GFF39	0.25	-2.4
30,163	+		GFF39	0.25	-2.6
30,163	+		GFF39	0.25	-0.0
30,166	-		GFF39	0.25	-0.4
30,168	+		GFF39	0.25	+1.7
30,171	-		GFF39	0.25	-2.7
30,171	-		GFF39	0.25	+0.3
30,193	-		GFF39	0.27	-2.4
30,232	+		GFF39	0.30	-1.0
30,234	+		GFF39	0.30	-1.5
30,236	-		GFF39	0.30	-0.6
30,237	-		GFF39	0.30	-0.6
30,240	-		GFF39	0.31	+0.7
30,242	-		GFF39	0.31	-1.2
30,252	-		GFF39	0.31	-0.4
30,287	+		GFF39	0.34	-0.1
30,287	+		GFF39	0.34	-0.1
30,295	-		GFF39	0.35	-1.3
30,300	-		GFF39	0.35	-0.7
30,300	-		GFF39	0.35	+0.7
30,327	+		GFF39	0.37	-0.7
30,338	+		GFF39	0.38	-1.6
30,338	+		GFF39	0.38	+1.0
30,346	-		GFF39	0.39	+1.2
30,346	-		GFF39	0.39	-2.0
30,346	-		GFF39	0.39	+0.8
30,346	-		GFF39	0.39	-0.2
30,346	-		GFF39	0.39	+0.8
30,346	-		GFF39	0.39	+0.7
30,346	-		GFF39	0.39	+0.9
30,360	+		GFF39	0.40	-0.1
30,365	+		GFF39	0.40	+1.4
30,368	-		GFF39	0.40	+1.1
30,368	-		GFF39	0.40	-2.2
30,368	-		GFF39	0.40	-1.9
30,403	+		GFF39	0.43	-1.2
30,407	-		GFF39	0.43	+0.2
30,407	-		GFF39	0.43	+0.0
30,411	-		GFF39	0.44	-0.1
30,424	+		GFF39	0.45	+1.0
30,430	-		GFF39	0.45	+1.4
30,432	-		GFF39	0.45	+0.3
30,448	+		GFF39	0.46	-0.0
30,451	-		GFF39	0.47	+0.3
30,453	+		GFF39	0.47	+0.5
30,453	-		GFF39	0.47	-0.7
30,467	+		GFF39	0.48	-0.6
30,478	-		GFF39	0.49	-0.6
30,506	+		GFF39	0.51	+0.6
30,506	+		GFF39	0.51	-1.6
30,514	-		GFF39	0.51	+0.5
30,514	-		GFF39	0.51	-0.0
30,545	+		GFF39	0.54	-0.6
30,545	+		GFF39	0.54	+0.3
30,550	+		GFF39	0.54	+0.0
30,550	+		GFF39	0.54	-1.4
30,550	+		GFF39	0.54	-1.1
30,553	-		GFF39	0.54	+0.9
30,555	+		GFF39	0.54	-0.1
30,558	-		GFF39	0.55	+0.2
30,558	-		GFF39	0.55	-0.3
30,558	-		GFF39	0.55	+0.9
30,558	-		GFF39	0.55	+1.0
30,558	-		GFF39	0.55	+0.2
30,558	-		GFF39	0.55	-0.8
30,558	-		GFF39	0.55	+0.7
30,560	+		GFF39	0.55	-1.1
30,563	-		GFF39	0.55	+0.6
30,568	-		GFF39	0.55	-0.4
30,606	-		GFF39	0.58	+0.3
30,624	-		GFF39	0.60	-0.9
30,640	+		GFF39	0.61	+1.2
30,641	+		GFF39	0.61	-1.1
30,657	+		GFF39	0.62	+0.1
30,658	+		GFF39	0.62	-0.4
30,674	+		GFF39	0.64	+0.1
30,676	+		GFF39	0.64	+1.1
30,676	+		GFF39	0.64	+0.9
30,676	+		GFF39	0.64	-0.4
30,676	+		GFF39	0.64	-3.1
30,676	+		GFF39	0.64	-0.2
30,676	+		GFF39	0.64	-0.7
30,676	+		GFF39	0.64	+1.0
30,676	+		GFF39	0.64	+0.5
30,676	+		GFF39	0.64	-2.2
30,684	-		GFF39	0.64	-0.1
30,684	-		GFF39	0.64	-1.0
30,684	-		GFF39	0.64	-1.1
30,684	-		GFF39	0.64	-0.0
30,684	-		GFF39	0.64	-1.8
30,730	-		GFF39	0.68	-2.2
30,732	+		GFF39	0.68	-1.8
30,732	+		GFF39	0.68	-1.0
30,740	+		GFF39	0.69	-0.3
30,740	-		GFF39	0.69	-1.0
30,740	-		GFF39	0.69	+0.6
30,740	-		GFF39	0.69	+0.3
30,755	-		GFF39	0.70	-0.4
30,767	+		GFF39	0.71	-0.1
30,772	-		GFF39	0.71	+0.8
30,792	-		GFF39	0.73	+1.6
30,811	+		GFF39	0.74	+1.3
30,842	-		GFF39	0.76	-0.6
30,854	+		GFF39	0.77	-0.7
30,871	-		GFF39	0.79	-0.7
30,871	-		GFF39	0.79	-0.5
30,871	-		GFF39	0.79	+0.6
30,902	+		GFF39	0.81	-1.5
30,902	+		GFF39	0.81	+0.8
30,967	-		GFF39	0.86	-0.7
30,971	+		GFF39	0.86	+0.8
30,971	+		GFF39	0.86	-0.5
30,976	+		GFF39	0.87	+0.6
30,979	-		GFF39	0.87	-0.5
30,979	-		GFF39	0.87	-0.3
30,979	-		GFF39	0.87	-0.0
30,979	-		GFF39	0.87	-1.0
30,979	-		GFF39	0.87	-0.9
30,983	+		GFF39	0.87	-0.0
31,035	-				-0.1
31,052	-				+0.4
31,063	+				-2.4
31,071	-				+0.4
31,081	-				-0.6
31,095	+				-1.2
31,098	+				-1.4
31,130	-				-0.8
31,168	-				-0.4
31,192	-				-2.1
31,194	-				-0.3
31,194	-				-0.2
31,202	+				-1.7
31,220	-				+0.1
31,227	+				+0.4
31,233	-				+0.6
31,253	-				+0.7
31,253	-				+0.4
31,253	-				+0.5
31,268	-				+0.4
31,268	-				+0.3
31,270	+				-0.2
31,277	+				+0.6
31,280	+				+0.2
31,338	+		GFF40	0.13	+0.6
31,383	+		GFF40	0.17	+0.4
31,386	-		GFF40	0.17	-0.0
31,459	+		GFF40	0.24	-0.4
31,505	-		GFF40	0.27	-0.8
31,512	+		GFF40	0.28	-0.9
31,513	-		GFF40	0.28	+1.3
31,540	-		GFF40	0.30	-1.7
31,540	-		GFF40	0.30	-1.2
31,557	+		GFF40	0.32	-1.9
31,560	-		GFF40	0.32	-0.1
31,560	-		GFF40	0.32	-0.5
31,563	+		GFF40	0.32	+0.0
31,571	-		GFF40	0.33	+0.2
31,571	-		GFF40	0.33	-1.9
31,574	+		GFF40	0.33	-1.4
31,582	-		GFF40	0.34	-0.4
31,616	+		GFF40	0.37	+0.4
31,624	-		GFF40	0.38	+0.0
31,624	-		GFF40	0.38	+0.4
31,624	-		GFF40	0.38	-0.6
31,637	-		GFF40	0.39	-1.2
31,646	+		GFF40	0.39	+0.6
31,654	-		GFF40	0.40	-2.2
31,736	+		GFF40	0.47	+0.0
31,787	+		GFF40	0.51	-0.0
31,789	+		GFF40	0.52	-1.7
31,797	-		GFF40	0.52	-0.6
31,804	-		GFF40	0.53	-1.2
31,827	-		GFF40	0.55	-1.2
31,837	+		GFF40	0.56	+0.8
31,847	+		GFF40	0.56	-0.7
31,865	+		GFF40	0.58	+0.3
31,927	+		GFF40	0.63	-0.5
31,955	+		GFF40	0.66	+1.6
31,960	+		GFF40	0.66	+0.1
31,963	-		GFF40	0.66	-0.8
31,968	-		GFF40	0.67	+0.3
31,968	-		GFF40	0.67	-0.7
31,968	-		GFF40	0.67	-0.4
31,968	-		GFF40	0.67	-1.4
31,968	-		GFF40	0.67	+0.3
31,968	-		GFF40	0.67	-1.2
31,968	-		GFF40	0.67	+0.3
31,968	-		GFF40	0.67	+0.8
31,988	-		GFF40	0.68	+0.6
31,988	-		GFF40	0.68	+1.1
31,991	+		GFF40	0.69	-0.6
31,997	+		GFF40	0.69	-0.6
31,997	+		GFF40	0.69	+1.3
31,999	-		GFF40	0.69	-1.1
31,999	-		GFF40	0.69	-0.5
32,002	+		GFF40	0.70	-0.4
32,005	-		GFF40	0.70	-0.6
32,010	-		GFF40	0.70	-1.6
32,010	-		GFF40	0.70	-1.0
32,017	+		GFF40	0.71	-0.2
32,017	+		GFF40	0.71	-0.2
32,017	+		GFF40	0.71	-2.6
32,017	+		GFF40	0.71	+2.2
32,017	+		GFF40	0.71	-1.9
32,025	-		GFF40	0.72	-1.4
32,025	-		GFF40	0.72	+0.7
32,025	-		GFF40	0.72	-0.8
32,025	-		GFF40	0.72	-1.5
32,025	-		GFF40	0.72	+0.6
32,031	+		GFF40	0.72	-2.5
32,037	-		GFF40	0.73	+0.6
32,044	-		GFF40	0.73	-1.3
32,044	-		GFF40	0.73	-0.0
32,044	-		GFF40	0.73	-1.0
32,052	-		GFF40	0.74	-2.0
32,067	-		GFF40	0.75	-1.2
32,067	-		GFF40	0.75	-0.6
32,072	-		GFF40	0.76	-2.0
32,072	-		GFF40	0.76	-0.0
32,072	-		GFF40	0.76	+1.3
32,105	-		GFF40	0.78	-0.1
32,106	-		GFF40	0.78	-0.7