Strain Fitness in Sphingobium sp. HT1-2 around GFF3855

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,893,868	+		GFF3853	0.77	-0.6
3,893,906	+		GFF3853	0.80	-1.2
3,893,914	-		GFF3853	0.81	+1.3
3,893,948	+		GFF3853	0.84	+0.4
3,893,990	-		GFF3853	0.88	-0.4
3,893,996	+		GFF3853	0.89	-0.1
3,894,001	+		GFF3853	0.89	+0.4
3,894,014	+				-2.1
3,894,035	+				-0.8
3,894,043	-				-1.5
3,894,043	-				-1.0
3,894,053	+				+0.0
3,894,066	+				-0.0
3,894,066	+				+0.3
3,894,075	-				+0.6
3,894,077	+				-1.3
3,894,078	-				-1.9
3,894,081	+				+0.0
3,894,101	+				-1.1
3,894,101	+				+0.2
3,894,101	+				-1.5
3,894,101	+				-1.7
3,894,107	+				-1.7
3,894,109	-				-0.8
3,894,109	-				-1.5
3,894,114	+				+0.9
3,894,119	+				-0.8
3,894,122	-				-0.2
3,894,124	+				-1.9
3,894,135	-				-1.2
3,894,135	-				-2.0
3,894,135	-				+0.2
3,894,158	+				+0.3
3,894,161	+				-1.4
3,894,174	+				+1.3
3,894,174	+				-0.0
3,894,182	+				-0.7
3,894,182	+				+0.4
3,894,182	+				+0.4
3,894,182	+				-0.2
3,894,190	+				+1.1
3,894,190	+				-1.2
3,894,190	-				-1.8
3,894,198	-				-0.5
3,894,198	-				-0.4
3,894,227	+				-0.8
3,894,254	+				-0.8
3,894,254	+				-0.6
3,894,257	+				-1.0
3,894,262	+				+0.6
3,894,262	+				+0.3
3,894,262	+				+0.1
3,894,262	-				+0.8
3,894,262	-				+0.7
3,894,262	-				-0.7
3,894,262	-				+0.5
3,894,265	-				+0.4
3,894,270	-				+0.2
3,894,275	-				-2.0
3,894,287	+				-0.6
3,894,332	+		GFF3854	0.17	+0.1
3,894,335	-		GFF3854	0.17	-0.4
3,894,335	-		GFF3854	0.17	+0.2
3,894,335	-		GFF3854	0.17	+1.4
3,894,341	+		GFF3854	0.18	+0.6
3,894,351	+		GFF3854	0.20	-0.6
3,894,359	-		GFF3854	0.21	-1.5
3,894,360	+		GFF3854	0.21	-0.2
3,894,360	-		GFF3854	0.21	+1.6
3,894,361	+		GFF3854	0.21	+0.5
3,894,362	+		GFF3854	0.21	-0.4
3,894,362	+		GFF3854	0.21	+1.4
3,894,364	-		GFF3854	0.22	-0.9
3,894,367	+		GFF3854	0.22	+0.5
3,894,375	-		GFF3854	0.23	+1.3
3,894,375	-		GFF3854	0.23	+0.1
3,894,380	-		GFF3854	0.24	-1.4
3,894,427	-		GFF3854	0.31	-0.6
3,894,433	+		GFF3854	0.32	+0.5
3,894,441	-		GFF3854	0.33	-1.0
3,894,446	-		GFF3854	0.34	+1.0
3,894,457	+		GFF3854	0.36	-0.5
3,894,457	+		GFF3854	0.36	-1.4
3,894,462	+		GFF3854	0.37	-0.1
3,894,479	+		GFF3854	0.39	+0.0
3,894,479	+		GFF3854	0.39	-2.7
3,894,479	+		GFF3854	0.39	-2.2
3,894,479	+		GFF3854	0.39	+0.9
3,894,486	-		GFF3854	0.40	-2.5
3,894,487	-		GFF3854	0.40	+0.1
3,894,487	-		GFF3854	0.40	-1.4
3,894,487	-		GFF3854	0.40	-0.9
3,894,524	-		GFF3854	0.46	+0.0
3,894,650	+		GFF3854	0.65	-0.6
3,894,650	+		GFF3854	0.65	-0.2
3,894,650	+		GFF3854	0.65	-0.6
3,894,650	+		GFF3854	0.65	-2.2
3,894,652	-		GFF3854	0.66	-0.4
3,894,658	-		GFF3854	0.67	-0.3
3,894,658	-		GFF3854	0.67	-0.4
3,894,658	-		GFF3854	0.67	-1.4
3,894,671	+		GFF3854	0.69	+0.4
3,894,691	+		GFF3854	0.72	-1.4
3,894,701	+		GFF3854	0.73	-2.3
3,894,701	+		GFF3854	0.73	-0.7
3,894,709	-		GFF3854	0.74	+0.3
3,894,742	+		GFF3854	0.79	-0.9
3,894,742	+		GFF3854	0.79	-0.2
3,894,749	+		GFF3854	0.80	-1.0
3,894,750	-		GFF3854	0.81	+1.2
3,894,750	-		GFF3854	0.81	-2.4
3,894,750	-		GFF3854	0.81	-0.6
3,894,750	-		GFF3854	0.81	+0.2
3,894,757	-		GFF3854	0.82	-1.5
3,894,757	-		GFF3854	0.82	-0.7
3,894,763	+		GFF3854	0.83	+0.8
3,894,763	+		GFF3854	0.83	-0.0
3,894,763	+		GFF3854	0.83	+0.2
3,894,768	+		GFF3854	0.83	+0.8
3,894,771	-		GFF3854	0.84	-0.4
3,894,771	-		GFF3854	0.84	+0.3
3,894,771	-		GFF3854	0.84	-1.5
3,894,771	-		GFF3854	0.84	+1.0
3,894,771	-		GFF3854	0.84	+0.9
3,894,771	-		GFF3854	0.84	-0.6
3,894,782	+		GFF3854	0.85	-0.7
3,894,784	+		GFF3854	0.86	-0.9
3,894,792	-		GFF3854	0.87	-1.6
3,894,818	-				+0.1
3,894,824	+				+1.0
3,894,824	+				+0.1
3,894,832	-				-1.3
3,894,848	+				-0.4
3,894,856	-				+0.0
3,894,866	+				+0.7
3,894,890	+				+0.4
3,894,890	+				-0.6
3,894,898	-				-0.7
3,894,903	+				-1.7
3,894,903	+				+1.2
3,894,903	+				-1.9
3,894,903	+				-0.1
3,894,903	+				-0.6
3,894,903	+				-1.2
3,894,903	+				-2.3
3,894,903	+				-0.0
3,894,903	+				-0.2
3,894,903	+				+0.4
3,894,903	+				-0.2
3,894,904	-				-0.1
3,894,909	-				-0.3
3,894,909	-				+0.1
3,894,909	-				-2.4
3,894,911	-				-0.5
3,894,911	-				-1.8
3,894,911	-				-1.8
3,894,911	-				+0.8
3,894,911	-				+0.8
3,894,919	-				-0.5
3,894,925	+				-0.9
3,894,930	+				+0.2
3,894,942	+				+0.4
3,894,945	-				+0.8
3,894,979	-				-2.3
3,894,999	-				+0.1
3,895,000	-				-0.2
3,895,020	+		GFF3855	0.11	-0.9
3,895,020	+		GFF3855	0.11	-1.2
3,895,021	-		GFF3855	0.11	-0.4
3,895,025	+		GFF3855	0.11	+0.0
3,895,028	-		GFF3855	0.11	-1.0
3,895,033	-		GFF3855	0.12	-0.8
3,895,033	-		GFF3855	0.12	-0.8
3,895,033	-		GFF3855	0.12	-0.5
3,895,059	-		GFF3855	0.14	-0.5
3,895,066	+		GFF3855	0.14	-0.3
3,895,066	+		GFF3855	0.14	-1.5
3,895,074	-		GFF3855	0.15	-0.9
3,895,081	+		GFF3855	0.15	-1.6
3,895,094	-		GFF3855	0.16	-0.4
3,895,094	-		GFF3855	0.16	-0.2
3,895,094	-		GFF3855	0.16	-1.4
3,895,138	-		GFF3855	0.19	+1.0
3,895,143	-		GFF3855	0.20	-2.0
3,895,143	-		GFF3855	0.20	-2.5
3,895,143	-		GFF3855	0.20	-0.9
3,895,162	+		GFF3855	0.21	-0.7
3,895,162	+		GFF3855	0.21	-0.4
3,895,162	+		GFF3855	0.21	+0.8
3,895,167	+		GFF3855	0.21	-1.7
3,895,170	-		GFF3855	0.22	+0.5
3,895,172	+		GFF3855	0.22	-1.2
3,895,195	+		GFF3855	0.23	-1.3
3,895,198	-		GFF3855	0.23	-1.0
3,895,203	-		GFF3855	0.24	+0.6
3,895,208	-		GFF3855	0.24	-0.8
3,895,247	+		GFF3855	0.27	+0.3
3,895,255	-		GFF3855	0.28	-0.3
3,895,255	-		GFF3855	0.28	-1.9
3,895,264	+		GFF3855	0.28	-0.6
3,895,293	+		GFF3855	0.30	-1.0
3,895,320	-		GFF3855	0.32	-0.5
3,895,328	-		GFF3855	0.33	-1.2
3,895,358	+		GFF3855	0.35	-1.2
3,895,363	-		GFF3855	0.35	+0.4
3,895,384	+		GFF3855	0.37	-0.3
3,895,403	+		GFF3855	0.38	-0.9
3,895,413	-		GFF3855	0.39	-1.9
3,895,441	+		GFF3855	0.41	-0.5
3,895,441	+		GFF3855	0.41	-0.5
3,895,441	+		GFF3855	0.41	-0.6
3,895,444	-		GFF3855	0.41	-2.6
3,895,449	-		GFF3855	0.41	+1.5
3,895,449	-		GFF3855	0.41	-0.6
3,895,449	-		GFF3855	0.41	+0.0
3,895,449	-		GFF3855	0.41	-0.5
3,895,449	-		GFF3855	0.41	+0.4
3,895,449	-		GFF3855	0.41	-1.9
3,895,449	-		GFF3855	0.41	-2.1
3,895,449	-		GFF3855	0.41	-0.0
3,895,449	-		GFF3855	0.41	-0.6
3,895,449	-		GFF3855	0.41	-1.7
3,895,451	-		GFF3855	0.41	-0.9
3,895,479	+		GFF3855	0.43	+0.8
3,895,489	-		GFF3855	0.44	+1.0
3,895,533	-		GFF3855	0.47	-1.6
3,895,565	-		GFF3855	0.49	+1.1
3,895,590	+		GFF3855	0.51	+0.4
3,895,590	+		GFF3855	0.51	+0.2
3,895,598	-		GFF3855	0.52	-1.1
3,895,600	+		GFF3855	0.52	-0.7
3,895,608	-		GFF3855	0.53	-0.7
3,895,608	-		GFF3855	0.53	-0.7
3,895,618	+		GFF3855	0.53	-1.5
3,895,648	-		GFF3855	0.55	-0.9
3,895,673	+		GFF3855	0.57	-1.0
3,895,698	-		GFF3855	0.59	-1.1
3,895,741	-		GFF3855	0.62	-1.1
3,895,762	+		GFF3855	0.63	-2.1
3,895,780	+		GFF3855	0.65	-1.4
3,895,789	+		GFF3855	0.65	+0.5
3,895,789	+		GFF3855	0.65	+0.5
3,895,797	-		GFF3855	0.66	-1.5
3,895,814	+		GFF3855	0.67	-0.0
3,895,822	+		GFF3855	0.68	-0.4
3,895,830	-		GFF3855	0.68	-1.0
3,895,841	+		GFF3855	0.69	+0.5
3,895,844	+		GFF3855	0.69	-0.7
3,895,871	+		GFF3855	0.71	-0.0
3,895,883	+		GFF3855	0.72	+0.8
3,895,884	-		GFF3855	0.72	-0.5
3,895,901	-		GFF3855	0.73	-1.4
3,895,901	-		GFF3855	0.73	+0.8
3,895,946	-		GFF3855	0.76	-0.6
3,895,960	+		GFF3855	0.77	+1.1
3,895,986	+		GFF3855	0.79	+0.9
3,896,023	+		GFF3855	0.82	-1.5
3,896,029	+		GFF3855	0.82	-0.5
3,896,029	+		GFF3855	0.82	-0.3
3,896,029	+		GFF3855	0.82	-0.0
3,896,031	-		GFF3855	0.82	-1.1
3,896,031	-		GFF3855	0.82	+0.4
3,896,031	-		GFF3855	0.82	-0.8
3,896,037	-		GFF3855	0.83	+0.6
3,896,037	-		GFF3855	0.83	-2.1
3,896,037	-		GFF3855	0.83	-1.7
3,896,043	+		GFF3855	0.83	+0.4
3,896,053	+		GFF3855	0.84	+0.6
3,896,053	+		GFF3855	0.84	-1.7
3,896,068	+		GFF3855	0.85	+0.6
3,896,074	-		GFF3855	0.85	-0.4
3,896,099	+		GFF3855	0.87	+1.1
3,896,123	+		GFF3855	0.89	-1.6
3,896,131	-		GFF3855	0.90	-0.1
3,896,131	-		GFF3855	0.90	+0.4
3,896,131	-		GFF3855	0.90	+0.3
3,896,140	+				+0.9
3,896,141	+				-0.1
3,896,145	+				-1.8
3,896,145	+				+1.0
3,896,150	+				-0.6
3,896,150	+				+0.6
3,896,150	+				-1.6
3,896,150	+				+0.4
3,896,150	+				-1.1
3,896,150	+				-1.5
3,896,150	+				+0.9
3,896,150	+				-0.7
3,896,152	+				-0.3
3,896,153	-				-0.6
3,896,153	-				-0.3
3,896,158	-				-2.4
3,896,165	+				-0.2
3,896,175	-				+0.2
3,896,185	+				-0.6
3,896,193	-				-0.2
3,896,200	+				+0.5
3,896,200	+				-1.4
3,896,200	+				+1.0
3,896,200	+				-0.7
3,896,200	+				-3.3
3,896,208	-				+0.1
3,896,208	-				-0.4
3,896,208	-				-2.7
3,896,208	-				+0.0
3,896,208	-				+0.4
3,896,217	-				-0.2
3,896,225	+				-0.7
3,896,225	+				-0.8
3,896,225	+				-0.4
3,896,228	+				+0.3
3,896,230	+				-2.7
3,896,232	-				-0.6
3,896,266	-				-0.5
3,896,271	-				+0.8
3,896,273	+				+0.1
3,896,274	-				-0.7
3,896,281	-				-0.2
3,896,286	+				+0.3
3,896,311	-				-0.6
3,896,327	+				+0.6
3,896,328	-				-0.4
3,896,332	+				-0.5
3,896,333	+				+0.2
3,896,335	-				-1.9
3,896,335	-				+0.8
3,896,335	-				-0.0
3,896,340	+				+0.0
3,896,355	+				+1.1
3,896,355	+				-0.2
3,896,355	+				-1.9
3,896,355	+				-1.6
3,896,355	+				+0.4
3,896,355	+				-0.2
3,896,355	+				-0.0
3,896,355	+				-1.2
3,896,363	-				-0.1
3,896,363	-				+0.2
3,896,363	-				-1.2
3,896,366	+				-0.1
3,896,366	+				+0.1
3,896,374	-				-0.7
3,896,374	-				+0.8
3,896,387	+				-1.2
3,896,392	+				+0.7
3,896,392	+				-1.5
3,896,392	+				+0.2
3,896,392	+				+0.5
3,896,398	-				-0.4
3,896,400	-				+0.6
3,896,400	-				-0.3
3,896,400	-				-0.8
3,896,400	-				-1.0
3,896,400	-				-0.2
3,896,405	-				-1.5
3,896,411	+				-1.4
3,896,411	+				-0.2
3,896,411	+				+0.2
3,896,419	+				+1.0
3,896,427	-				+1.4
3,896,441	-				+2.1
3,896,476	+				-1.4
3,896,476	+				-0.7
3,896,498	-				-1.2
3,896,506	-				+0.5
3,896,506	-				-1.5
3,896,506	-				+0.7
3,896,519	+				-0.3
3,896,534	+				-0.5
3,896,541	+				-2.8
3,896,601	-		GFF3856	0.11	-2.9
3,896,605	-		GFF3856	0.11	-2.4
3,896,632	+		GFF3856	0.13	+0.5
3,896,660	+		GFF3856	0.14	+1.3
3,896,678	+		GFF3856	0.15	+1.1
3,896,678	+		GFF3856	0.15	-0.2
3,896,678	+		GFF3856	0.15	-0.1
3,896,678	+		GFF3856	0.15	-1.1
3,896,683	+		GFF3856	0.15	-1.6
3,896,691	-		GFF3856	0.16	+0.1
3,896,691	-		GFF3856	0.16	+0.2
3,896,717	+		GFF3856	0.17	+0.6
3,896,717	+		GFF3856	0.17	+0.6
3,896,717	+		GFF3856	0.17	-0.5
3,896,717	+		GFF3856	0.17	-1.1
3,896,717	+		GFF3856	0.17	-1.0
3,896,717	+		GFF3856	0.17	-0.2
3,896,717	+		GFF3856	0.17	-0.8
3,896,717	+		GFF3856	0.17	+0.6
3,896,717	+		GFF3856	0.17	-0.2
3,896,717	+		GFF3856	0.17	-1.7
3,896,717	+		GFF3856	0.17	+0.7
3,896,717	+		GFF3856	0.17	+0.8
3,896,717	+		GFF3856	0.17	+0.4
3,896,717	+		GFF3856	0.17	-0.0
3,896,717	+		GFF3856	0.17	-1.5
3,896,717	+		GFF3856	0.17	-3.0
3,896,717	+		GFF3856	0.17	-0.5
3,896,717	+		GFF3856	0.17	-1.5
3,896,717	+		GFF3856	0.17	+0.9
3,896,717	+		GFF3856	0.17	-0.5
3,896,724	+		GFF3856	0.17	+0.8
3,896,724	+		GFF3856	0.17	+0.5
3,896,724	+		GFF3856	0.17	-0.9
3,896,725	+		GFF3856	0.17	-1.2
3,896,725	+		GFF3856	0.17	-2.2
3,896,725	+		GFF3856	0.17	-0.0
3,896,725	-		GFF3856	0.17	-0.7
3,896,725	-		GFF3856	0.17	-0.7
3,896,725	-		GFF3856	0.17	+0.1
3,896,725	-		GFF3856	0.17	-0.1
3,896,725	-		GFF3856	0.17	-0.9
3,896,725	-		GFF3856	0.17	-0.9
3,896,725	-		GFF3856	0.17	-1.2
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3,896,725	-		GFF3856	0.17	-1.8
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3,896,725	-		GFF3856	0.17	-1.2
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3,896,748	+		GFF3856	0.18	-2.2
3,896,824	+		GFF3856	0.22	-2.2
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3,896,832	-		GFF3856	0.23	-0.2
3,896,845	+		GFF3856	0.23	-1.1
3,896,891	+		GFF3856	0.25	-1.3
3,896,904	+		GFF3856	0.26	-0.6
3,896,912	-		GFF3856	0.26	-1.2
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3,896,944	+		GFF3856	0.28	-1.8
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3,897,026	+		GFF3856	0.32	-1.3
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3,897,206	-		GFF3856	0.41	-1.0